CL:0000349: Difference between revisions
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{{CL | {{CL | ||
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|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000349 | |||
|is_a=CL:0000548 ;;CL:0002371 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=extraembryonic cell | ||
|namespace=cell | |||
|obo_creation_date= | |||
|part_of=UBERON:0000478 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
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Revision as of 10:17, 12 September 2014
| Name: | extraembryonic cell |
|---|---|
| Namespace: | cell |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000548(animal cell),CL:0002371(somatic cell) |
|---|---|
| part_of: | UBERON:0000478(extraembryonic structure) |
Children
| is a: | CL:0000351 (trophoblast cell),CL:0002536 (amniotic epithelial cell),CL:0002537 (amnion mesenchymal stem cell),CL:0002541 (chorionic membrane mesenchymal stem cell),CL:0002558 (fibroblast of villous mesenchyme),CL:0002569 (mesenchymal stem cell of umbilical cord),CL:0002577 (placental epithelial cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11278-116H9 (Placental Epithelial Cells, donor1)
- 11355-117H5 (Placental Epithelial Cells, donor2)
- 11427-118G5 (Placental Epithelial Cells, donor3)
- 11533-120A3 (Amniotic Epithelial Cells, donor1)
- 11534-120A4
- 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
- 11547-120B8 (Mesenchymal Stem Cells - amniotic membrane, donor1)
- 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
- 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
... further results Mouse (Mus musculus)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11278-116H9 (Placental Epithelial Cells, donor1)
- 11355-117H5 (Placental Epithelial Cells, donor2)
- 11427-118G5 (Placental Epithelial Cells, donor3)
- 11533-120A3 (Amniotic Epithelial Cells, donor1)
- 11534-120A4
- 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
- 11547-120B8 (Mesenchymal Stem Cells - amniotic membrane, donor1)
- 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
- 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000349 (extraembryonic cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.74e-104 | FFCP PHASE2:Hg19::chr2:237683156..237683171,+#_05da9e064508172b80f903f6456a21f2 | p@chr2:237683156..237683171, + |
| 9.74e-104 | FFCP PHASE1:Hg19::chr2:237683156..237683171,+#_05da9e064508172b80f903f6456a21f2 | p@chr2:237683156..237683171, + |
| 7.02e-103 | FFCP PHASE2:Hg19::chr19:36592982..36592993,+#_9a3510ce94ff2d775f68b72186fe4687 | p@chr19:36592982..36592993, + |
| 7.02e-103 | FFCP PHASE1:Hg19::chr19:36592982..36592993,+#_9a3510ce94ff2d775f68b72186fe4687 | p@chr19:36592982..36592993, + |
| 6.43e-96 | FFCP PHASE2:Hg19::chr3:55384975..55384986,-#_f5da4a13ccdb9b0bb734b99b480c80c3 | p1@ENST00000469806 |
| 6.43e-96 | FFCP PHASE1:Hg19::chr3:55384975..55384986,-#_f5da4a13ccdb9b0bb734b99b480c80c3 | p1@ENST00000469806 |
| 1.62e-93 | FFCP PHASE2:Hg19::chr20:61287795..61287809,+#_773498266b65f4c0834ebf502a69034d | p4@SLCO4A1 |
| 1.62e-93 | FFCP PHASE1:Hg19::chr20:61287795..61287809,+#_773498266b65f4c0834ebf502a69034d | p4@SLCO4A1 |
| 6.35e-89 | FFCP PHASE1:Hg19::chr11:8857248..8857269,-#_88c8fdfce8ba731666709ad4cf3860e8 | p16@ST5 |
| 6.35e-89 | FFCP PHASE2:Hg19::chr11:8857248..8857269,-#_88c8fdfce8ba731666709ad4cf3860e8 | p16@ST5 |
| 6.91e-89 | FFCP PHASE1:Hg19::chr2:237682954..237682971,+#_55548b3aca4f60d1ab585b3d38504d1d | p@chr2:237682954..237682971, + |
| 6.91e-89 | FFCP PHASE2:Hg19::chr2:237682954..237682971,+#_55548b3aca4f60d1ab585b3d38504d1d | p@chr2:237682954..237682971, + |
| 8.17e-89 | FFCP PHASE2:Hg19::chr2:237682990..237683009,+#_6d941d0ff03bb41988301ce76481f57c | p@chr2:237682990..237683009, + |
| 8.17e-89 | FFCP PHASE1:Hg19::chr2:237682990..237683009,+#_6d941d0ff03bb41988301ce76481f57c | p@chr2:237682990..237683009, + |
| 9.66e-89 | FFCP PHASE1:Hg19::chr11:8857295..8857310,-#_eeae10e9b53df595c84aa41fdbfe0d60 | p21@ST5 |
| 9.66e-89 | FFCP PHASE2:Hg19::chr11:8857295..8857310,-#_eeae10e9b53df595c84aa41fdbfe0d60 | p21@ST5 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:12861081..12861085,+#_8622738231903069f699a518c38ca6e2 | p@chr6:12861081..12861085, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:55557307..55557316,+#_8622738231903069f699a518c38ca6e2 | p11@Cmtm5 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:55557319..55557330,+#_8622738231903069f699a518c38ca6e2 | p7@Cmtm5 |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:135868788..135868795,+#_8622738231903069f699a518c38ca6e2 | p@chrX:135868788..135868795, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:114739327..114739352,+#_8622738231903069f699a518c38ca6e2 | p@chr11:114739327..114739352, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:10444938..10444948,+#_8622738231903069f699a518c38ca6e2 | p@chr2:10444938..10444948, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:135868788..135868795,+#_8622738231903069f699a518c38ca6e2 | p@chrX:135868788..135868795, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr8:44265871..44265878,+#_8622738231903069f699a518c38ca6e2 | p2@Triml2 |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:22692718..22692721,+#_8622738231903069f699a518c38ca6e2 | p@chrX:22692718..22692721, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:122510273..122510281,+#_8622738231903069f699a518c38ca6e2 | p@chr9:122510273..122510281, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:109236868..109236869,+#_8622738231903069f699a518c38ca6e2 | p@chr13:109236868..109236869, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:12861081..12861085,+#_8622738231903069f699a518c38ca6e2 | p@chr6:12861081..12861085, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr3:51025125..51025133,+#_8622738231903069f699a518c38ca6e2 | p@chr3:51025125..51025133, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:9880126..9880128,+#_8622738231903069f699a518c38ca6e2 | p@chr4:9880126..9880128, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:35180221..35180224,+#_8622738231903069f699a518c38ca6e2 | p1@Rhox6 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:66833174..66833180,-#_8622738231903069f699a518c38ca6e2 | p@chr17:66833174..66833180, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:59378043..59378047,-#_8622738231903069f699a518c38ca6e2 | p@chr9:59378043..59378047, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr8:44392310..44392319,-#_8622738231903069f699a518c38ca6e2 | p4@Zfp42 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:174143295..174143309,-#_8622738231903069f699a518c38ca6e2 | p@chr1:174143295..174143309, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:132804797..132804808,+#_8622738231903069f699a518c38ca6e2 | p4@Ngfrap1 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr19:53750863..53750906,+#_8622738231903069f699a518c38ca6e2 | p@chr19:53750863..53750906, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:55557319..55557330,+#_8622738231903069f699a518c38ca6e2 | p7@Cmtm5 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:59378043..59378047,-#_8622738231903069f699a518c38ca6e2 | p@chr9:59378043..59378047, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:133574662..133574669,-#_8622738231903069f699a518c38ca6e2 | p2@Lin28a |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:22692718..22692721,+#_8622738231903069f699a518c38ca6e2 | p@chrX:22692718..22692721, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:10444938..10444948,+#_8622738231903069f699a518c38ca6e2 | p@chr2:10444938..10444948, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr16:66852878..66852880,+#_8622738231903069f699a518c38ca6e2 | p@chr16:66852878..66852880, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:55556656..55556665,+#_8622738231903069f699a518c38ca6e2 | p@chr14:55556656..55556665, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:122774653..122774665,+#_8622738231903069f699a518c38ca6e2 | p@chr6:122774653..122774665, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:6988793..6988807,-#_8622738231903069f699a518c38ca6e2 | p@chr17:6988793..6988807, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:114739327..114739352,+#_8622738231903069f699a518c38ca6e2 | p@chr11:114739327..114739352, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr16:66852878..66852880,+#_8622738231903069f699a518c38ca6e2 | p@chr16:66852878..66852880, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:109236868..109236869,+#_8622738231903069f699a518c38ca6e2 | p@chr13:109236868..109236869, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:66833174..66833180,-#_8622738231903069f699a518c38ca6e2 | p@chr17:66833174..66833180, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr12:87810964..87810976,-#_8622738231903069f699a518c38ca6e2 | p@chr12:87810964..87810976, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr16:44262965..44262975,-#_8622738231903069f699a518c38ca6e2 | p@chr16:44262965..44262975, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:114472387..114472401,-#_8622738231903069f699a518c38ca6e2 | p@chr9:114472387..114472401, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:174143295..174143309,-#_8622738231903069f699a518c38ca6e2 | p@chr1:174143295..174143309, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr7:92689753..92689757,-#_8622738231903069f699a518c38ca6e2 | p@chr7:92689753..92689757, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr8:44265871..44265878,+#_8622738231903069f699a518c38ca6e2 | p2@Triml2 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:114472387..114472401,-#_8622738231903069f699a518c38ca6e2 | p@chr9:114472387..114472401, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:55556656..55556665,+#_8622738231903069f699a518c38ca6e2 | p@chr14:55556656..55556665, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:55557268..55557274,+#_8622738231903069f699a518c38ca6e2 | p14@Cmtm5 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:122774653..122774665,+#_8622738231903069f699a518c38ca6e2 | p@chr6:122774653..122774665, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:55557459..55557474,+#_8622738231903069f699a518c38ca6e2 | p6@Cmtm5 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr3:51025125..51025133,+#_8622738231903069f699a518c38ca6e2 | p@chr3:51025125..51025133, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:68409910..68409914,+#_8622738231903069f699a518c38ca6e2 | p@chr13:68409910..68409914, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:78698925..78698930,+#_8622738231903069f699a518c38ca6e2 | p@chr11:78698925..78698930, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:122510273..122510281,+#_8622738231903069f699a518c38ca6e2 | p@chr9:122510273..122510281, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr8:28338006..28338016,-#_8622738231903069f699a518c38ca6e2 | p@chr8:28338006..28338016, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:55557268..55557274,+#_8622738231903069f699a518c38ca6e2 | p14@Cmtm5 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr16:44262965..44262975,-#_8622738231903069f699a518c38ca6e2 | p@chr16:44262965..44262975, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:55557307..55557316,+#_8622738231903069f699a518c38ca6e2 | p11@Cmtm5 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr19:53750863..53750906,+#_8622738231903069f699a518c38ca6e2 | p@chr19:53750863..53750906, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:135868692..135868701,+#_8622738231903069f699a518c38ca6e2 | p@chrX:135868692..135868701, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:78698925..78698930,+#_8622738231903069f699a518c38ca6e2 | p@chr11:78698925..78698930, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr8:44392310..44392319,-#_8622738231903069f699a518c38ca6e2 | p4@Zfp42 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr7:92689753..92689757,-#_8622738231903069f699a518c38ca6e2 | p@chr7:92689753..92689757, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr12:87810964..87810976,-#_8622738231903069f699a518c38ca6e2 | p@chr12:87810964..87810976, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:132804797..132804808,+#_8622738231903069f699a518c38ca6e2 | p4@Ngfrap1 |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:135868692..135868701,+#_8622738231903069f699a518c38ca6e2 | p@chrX:135868692..135868701, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:9880126..9880128,+#_8622738231903069f699a518c38ca6e2 | p@chr4:9880126..9880128, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:6988793..6988807,-#_8622738231903069f699a518c38ca6e2 | p@chr17:6988793..6988807, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:55557459..55557474,+#_8622738231903069f699a518c38ca6e2 | p6@Cmtm5 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:133574662..133574669,-#_8622738231903069f699a518c38ca6e2 | p2@Lin28a |
| 1.58e-86 | FFCP PHASE2:Mm9::chr8:28338006..28338016,-#_8622738231903069f699a518c38ca6e2 | p@chr8:28338006..28338016, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:68409910..68409914,+#_8622738231903069f699a518c38ca6e2 | p@chr13:68409910..68409914, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:35180221..35180224,+#_8622738231903069f699a518c38ca6e2 | p1@Rhox6 |
| 1.52e-83 | FFCP PHASE1:Hg19::chr18:6286777..6286797,+#_e19025038b97451fd0b6701e7457beae | p@chr18:6286777..6286797, + |
| 1.52e-83 | FFCP PHASE2:Hg19::chr18:6286777..6286797,+#_e19025038b97451fd0b6701e7457beae | p@chr18:6286777..6286797, + |
| 2.66e-83 | FFCP PHASE2:Hg19::chr11:8857215..8857232,-#_4315d0d53702acc559b251374af8cedd | p17@ST5 |
| 2.66e-83 | FFCP PHASE1:Hg19::chr11:8857215..8857232,-#_4315d0d53702acc559b251374af8cedd | p17@ST5 |
| 1.46e-82 | FFCP PHASE2:Hg19::chr17:2278441..2278454,+#_c74526a46028465c8379c435ad251da8 | p13@SGSM2 |
| 1.46e-82 | FFCP PHASE2:Hg19::chr2:237683203..237683210,+#_c74526a46028465c8379c435ad251da8 | p@chr2:237683203..237683210, + |
| 1.46e-82 | FFCP PHASE1:Hg19::chr17:2278441..2278454,+#_c74526a46028465c8379c435ad251da8 | p13@SGSM2 |
| 1.46e-82 | FFCP PHASE1:Hg19::chr2:237683203..237683210,+#_c74526a46028465c8379c435ad251da8 | p@chr2:237683203..237683210, + |
| 2.53e-79 | FFCP PHASE2:Hg19::chr11:1946293..1946319,+#_7e505b0fd99dd1f219f4065d09c91b61 | p11@TNNT3 |
| 2.53e-79 | FFCP PHASE1:Hg19::chr11:1946293..1946319,+#_7e505b0fd99dd1f219f4065d09c91b61 | p11@TNNT3 |
| 6.22e-79 | FFCP PHASE2:Hg19::chr15:68344995..68345013,+#_adfca23d7045aaf244c3d80b489c8866 | p@chr15:68344995..68345013, + |
| 6.22e-79 | FFCP PHASE1:Hg19::chr15:68344995..68345013,+#_adfca23d7045aaf244c3d80b489c8866 | p@chr15:68344995..68345013, + |
| 3.19e-78 | FFCP PHASE2:Hg19::chr2:237683212..237683239,+#_7955c79ed778f63b47b942847266a8e2 | p@chr2:237683212..237683239, + |
| 3.19e-78 | FFCP PHASE1:Hg19::chr2:237683212..237683239,+#_7955c79ed778f63b47b942847266a8e2 | p@chr2:237683212..237683239, + |
| 4.83e-76 | FFCP PHASE1:Hg19::chr6:12161831..12161855,+#_0d840f82e1b45880f65f27a8df52f673 | p@chr6:12161831..12161855, + |
| 4.83e-76 | FFCP PHASE2:Hg19::chr6:12161831..12161855,+#_0d840f82e1b45880f65f27a8df52f673 | p@chr6:12161831..12161855, + |
