Personal tools

CL:0000737: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000737
|alt_id=
|name=striated muscle cell
|namespace=cell
|def="Muscle cell which has as its direct parts myofilaments organized into sarcomeres." [GOC:tfm, ISBN:0721662544]
|xref=BTO:0002916;;FMA:86936
|is_a=CL:0000187
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Muscle cell which has as its direct parts myofilaments organized into sarcomeres." [GOC:tfm, ISBN:0721662544]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000737
|is_a=CL:0000187
|is_obsolete=
|located_in=
|located_in=
|name=striated muscle cell
|namespace=cell
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0002916;;FMA:86936
}}
}}

Revision as of 10:20, 12 September 2014

Name:striated muscle cell
Namespace:cell
Definition:"Muscle cell which has as its direct parts myofilaments organized into sarcomeres." [GOC:tfm, ISBN:0721662544]
Xrefs:
links:

BTO:0002916

FMA:86936


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000187(muscle cell)



Children


is a:CL:0000746 (cardiac muscle cell),CL:0002372 (myotube)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000737 (striated muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr7:106471695..106471701,+#_13e6cd558b39594295809045d3e5f430p@chr7:106471695..106471701, +
1.58e-86FFCP PHASE2:Mm9::chr9:56096674..56096680,+#_13e6cd558b39594295809045d3e5f430p@chr9:56096674..56096680, +
1.58e-86FFCP PHASE2:Mm9::chr19:20567096..20567107,+#_13e6cd558b39594295809045d3e5f430p3@E030003E18Rik
1.58e-86FFCP PHASE1:Mm9::chr9:102766842..102766853,+#_13e6cd558b39594295809045d3e5f430p@chr9:102766842..102766853, +
1.58e-86FFCP PHASE2:Mm9::chr9:102766842..102766853,+#_13e6cd558b39594295809045d3e5f430p@chr9:102766842..102766853, +
1.58e-86FFCP PHASE1:Mm9::chr19:20567096..20567107,+#_13e6cd558b39594295809045d3e5f430p3@E030003E18Rik
1.58e-86FFCP PHASE2:Mm9::chr7:106471695..106471701,+#_13e6cd558b39594295809045d3e5f430p@chr7:106471695..106471701, +
1.58e-86FFCP PHASE1:Mm9::chr9:56096674..56096680,+#_13e6cd558b39594295809045d3e5f430p@chr9:56096674..56096680, +
1.33e-65FFCP PHASE2:Mm9::chr6:91183204..91183213,+#_577470b1f0a5a4cb1f8e23db3bee78c9p@chr6:91183204..91183213, +
1.33e-65FFCP PHASE1:Mm9::chr6:91183204..91183213,+#_577470b1f0a5a4cb1f8e23db3bee78c9p@chr6:91183204..91183213, +
2.21e-65FFCP PHASE1:Mm9::chr19:20567153..20567160,+#_08aec88b030a566710c775a8c1fa1e4ep7@E030003E18Rik
2.21e-65FFCP PHASE2:Mm9::chr19:20567153..20567160,+#_08aec88b030a566710c775a8c1fa1e4ep7@E030003E18Rik
4.9e-53FFCP PHASE2:Mm9::chr11:43827555..43827566,+#_9802d945389901e0f06140ec5ea28106p@chr11:43827555..43827566, +
4.9e-53FFCP PHASE1:Mm9::chr8:11239175..11239178,-#_9802d945389901e0f06140ec5ea28106p@chr8:11239175..11239178, -
4.9e-53FFCP PHASE1:Mm9::chr6:91222464..91222477,+#_9802d945389901e0f06140ec5ea28106p@chr6:91222464..91222477, +
4.9e-53FFCP PHASE1:Mm9::chr7:117772048..117772059,+#_9802d945389901e0f06140ec5ea28106p@chr7:117772048..117772059, +
4.9e-53FFCP PHASE1:Mm9::chr3:103596528..103596539,-#_9802d945389901e0f06140ec5ea28106p@chr3:103596528..103596539, -
4.9e-53FFCP PHASE2:Mm9::chr19:20567067..20567078,+#_9802d945389901e0f06140ec5ea28106p6@E030003E18Rik
4.9e-53FFCP PHASE2:Mm9::chr3:103596528..103596539,-#_9802d945389901e0f06140ec5ea28106p@chr3:103596528..103596539, -
4.9e-53FFCP PHASE2:Mm9::chr7:117772048..117772059,+#_9802d945389901e0f06140ec5ea28106p@chr7:117772048..117772059, +
4.9e-53FFCP PHASE1:Mm9::chr11:43827555..43827566,+#_9802d945389901e0f06140ec5ea28106p@chr11:43827555..43827566, +
4.9e-53FFCP PHASE2:Mm9::chr8:11239175..11239178,-#_9802d945389901e0f06140ec5ea28106p@chr8:11239175..11239178, -
4.9e-53FFCP PHASE2:Mm9::chr6:91222464..91222477,+#_9802d945389901e0f06140ec5ea28106p@chr6:91222464..91222477, +
4.9e-53FFCP PHASE1:Mm9::chr19:20567067..20567078,+#_9802d945389901e0f06140ec5ea28106p6@E030003E18Rik
7.35e-53FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_119c9221b70de566b8ec5ba6ed95fbb6p2@Il6
7.35e-53FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_119c9221b70de566b8ec5ba6ed95fbb6p2@Il6
3.1e-50FFCP PHASE1:Hg19::chr14:61929910..61929917,+#_3f4b95263032e169f589c5bcadc14cf3p60@PRKCH
3.1e-50FFCP PHASE2:Hg19::chr14:61929910..61929917,+#_3f4b95263032e169f589c5bcadc14cf3p60@PRKCH
3.1e-50FFCP PHASE1:Hg19::chr7:35238792..35238801,-#_3f4b95263032e169f589c5bcadc14cf3p@chr7:35238792..35238801, -
3.1e-50FFCP PHASE2:Hg19::chr7:35238792..35238801,-#_3f4b95263032e169f589c5bcadc14cf3p@chr7:35238792..35238801, -
4.0e-50FFCP PHASE2:Hg19::chrX:131545245..131545250,-#_66a4bdcfcb59f92c54a20f0541b79289p32@MBNL3
4.0e-50FFCP PHASE1:Hg19::chrX:131545245..131545250,-#_66a4bdcfcb59f92c54a20f0541b79289p32@MBNL3
6.6e-50FFCP PHASE2:Hg19::chr18:19769123..19769149,+#_b76f6bcb192fdd7c0c87eab1853767e8p@chr18:19769123..19769149, +
6.6e-50FFCP PHASE1:Hg19::chr18:19769123..19769149,+#_b76f6bcb192fdd7c0c87eab1853767e8p@chr18:19769123..19769149, +
1.18e-44FFCP PHASE1:Mm9::chr19:20567168..20567179,+#_d615ab61e61d1a304e53e77b5af2c7d3p5@E030003E18Rik
1.18e-44FFCP PHASE2:Mm9::chr8:11449034..11449045,+#_d615ab61e61d1a304e53e77b5af2c7d3p@chr8:11449034..11449045, +
1.18e-44FFCP PHASE1:Mm9::chr8:11449034..11449045,+#_d615ab61e61d1a304e53e77b5af2c7d3p@chr8:11449034..11449045, +
1.18e-44FFCP PHASE2:Mm9::chr19:20567168..20567179,+#_d615ab61e61d1a304e53e77b5af2c7d3p5@E030003E18Rik
1.66e-44FFCP PHASE1:Mm9::chr11:61392754..61392766,-#_f50714a520e3d30fac3fb9751b552ae7p@chr11:61392754..61392766, -
1.66e-44FFCP PHASE2:Mm9::chr11:61392754..61392766,-#_f50714a520e3d30fac3fb9751b552ae7p@chr11:61392754..61392766, -
3.27e-44FFCP PHASE1:Mm9::chr3:103792260..103792309,+#_d5736e9aa5e68a2113e79ea45c4cf89fp@chr3:103792260..103792309, +
3.27e-44FFCP PHASE2:Mm9::chr3:103792260..103792309,+#_d5736e9aa5e68a2113e79ea45c4cf89fp@chr3:103792260..103792309, +
8.97e-44FFCP PHASE1:Mm9::chr5:93362343..93362363,+#_fe6f16fe8c481a3a25e08361b2e91c91p@chr5:93362343..93362363, +
8.97e-44FFCP PHASE2:Mm9::chr5:93362343..93362363,+#_fe6f16fe8c481a3a25e08361b2e91c91p@chr5:93362343..93362363, +
2.45e-43FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_c6ba2330f118a1fe7330de19c64800e9p@chrX:160838683..160838694, +
2.45e-43FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_c6ba2330f118a1fe7330de19c64800e9p@chrX:160838683..160838694, +
2.22e-40FFCP PHASE2:Hg19::chrX:131545301..131545315,-#_cda8b2eb36402e56fd649cf8e3d0d3a6p22@MBNL3
2.22e-40FFCP PHASE1:Hg19::chrX:131545301..131545315,-#_cda8b2eb36402e56fd649cf8e3d0d3a6p22@MBNL3
2.71e-40FFCP PHASE2:Hg19::chr4:2869695..2869706,+#_4581d3eae2ab2f9da72e6720154caf10p30@ADD1
2.71e-40FFCP PHASE1:Hg19::chr4:2869695..2869706,+#_4581d3eae2ab2f9da72e6720154caf10p30@ADD1
1.7e-39FFCP PHASE2:Mm9::chr8:125956526..125956533,-#_88575cd14e6aadba9ee30b9f3ea204abp@chr8:125956526..125956533, -
1.7e-39FFCP PHASE1:Mm9::chr8:125956526..125956533,-#_88575cd14e6aadba9ee30b9f3ea204abp@chr8:125956526..125956533, -
2.66e-39FFCP PHASE1:Mm9::chr8:125952865..125952872,-#_b2d8ce2b4f7b8eca1bc279b822e78a99p@chr8:125952865..125952872, -
2.66e-39FFCP PHASE1:Mm9::chr15:76984103..76984104,-#_b2d8ce2b4f7b8eca1bc279b822e78a99p18@Rbfox2
2.66e-39FFCP PHASE2:Mm9::chr15:76984103..76984104,-#_b2d8ce2b4f7b8eca1bc279b822e78a99p18@Rbfox2
2.66e-39FFCP PHASE2:Mm9::chr8:125952865..125952872,-#_b2d8ce2b4f7b8eca1bc279b822e78a99p@chr8:125952865..125952872, -
4.15e-39FFCP PHASE2:Mm9::chr7:117927007..117927010,+#_2c76e7a1a2b6e40d3346c63222f68c91p@chr7:117927007..117927010, +
4.15e-39FFCP PHASE1:Mm9::chr6:91202567..91202570,+#_2c76e7a1a2b6e40d3346c63222f68c91p@chr6:91202567..91202570, +
4.15e-39FFCP PHASE1:Mm9::chr7:117927007..117927010,+#_2c76e7a1a2b6e40d3346c63222f68c91p@chr7:117927007..117927010, +
4.15e-39FFCP PHASE2:Mm9::chr6:91202567..91202570,+#_2c76e7a1a2b6e40d3346c63222f68c91p@chr6:91202567..91202570, +
1.17e-38FFCP PHASE2:Mm9::chr6:91184012..91184021,+#_5c27ca52091a0890f0387d3d0fa1e904p@chr6:91184012..91184021, +
1.17e-38FFCP PHASE1:Mm9::chr6:91184012..91184021,+#_5c27ca52091a0890f0387d3d0fa1e904p@chr6:91184012..91184021, +
1.56e-38FFCP PHASE1:Mm9::chr16:58465599..58465600,+#_0f4671e0826e42a72964171089bdba9bp@chr16:58465599..58465600, +
1.56e-38FFCP PHASE2:Mm9::chr16:58465599..58465600,+#_0f4671e0826e42a72964171089bdba9bp@chr16:58465599..58465600, +
2.79e-38FFCP PHASE2:Mm9::chr4:141154145..141154160,-#_c174867efc52e6b91660ef08a07f4b73p6@Fblim1
2.79e-38FFCP PHASE1:Mm9::chr4:141154145..141154160,-#_c174867efc52e6b91660ef08a07f4b73p6@Fblim1
3.73e-38FFCP PHASE2:Mm9::chr3:54920096..54920117,+#_315e9f89ff873f738e1a39ff66b8bf89p7@Spg20
3.73e-38FFCP PHASE1:Mm9::chr3:54920096..54920117,+#_315e9f89ff873f738e1a39ff66b8bf89p7@Spg20
6.64e-38FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_374d199820558ddfc8bbce11aab88ee3p@chr12:105433069..105433075, -
6.64e-38FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_374d199820558ddfc8bbce11aab88ee3p@chr12:105433069..105433075, -
8.86e-38FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_2eac022bea974c66acb3e56e7a9b26e8p@chrX:65748600..65748616, +
8.86e-38FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_2eac022bea974c66acb3e56e7a9b26e8p@chrX:65748600..65748616, +
8.86e-38FFCP PHASE1:Mm9::chr18:61220910..61220912,+#_2eac022bea974c66acb3e56e7a9b26e8p@chr18:61220910..61220912, +
8.86e-38FFCP PHASE2:Mm9::chr18:61220910..61220912,+#_2eac022bea974c66acb3e56e7a9b26e8p@chr18:61220910..61220912, +
3.67e-34FFCP PHASE2:Mm9::chr7:19425360..19425369,+#_e657374b0031f42a71985e726f837b52p2@Mill2
3.67e-34FFCP PHASE1:Mm9::chr6:91183490..91183501,+#_e657374b0031f42a71985e726f837b52p@chr6:91183490..91183501, +
3.67e-34FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_e657374b0031f42a71985e726f837b52p@chr6:91222095..91222107, +
3.67e-34FFCP PHASE2:Mm9::chr6:91183490..91183501,+#_e657374b0031f42a71985e726f837b52p@chr6:91183490..91183501, +
3.67e-34FFCP PHASE1:Mm9::chr7:19425360..19425369,+#_e657374b0031f42a71985e726f837b52p2@Mill2
3.67e-34FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_e657374b0031f42a71985e726f837b52p@chr6:91222095..91222107, +
7.89e-34FFCP PHASE2:Mm9::chr5:137542830..137542841,-#_54ad5f2536716d96c4f36c701657a308p@chr5:137542830..137542841, -
7.89e-34FFCP PHASE1:Mm9::chr5:137542830..137542841,-#_54ad5f2536716d96c4f36c701657a308p@chr5:137542830..137542841, -
1.17e-33FFCP PHASE2:Hg19::chrX:47895575..47895589,+#_02c3b06f3393a388b5abf6c6cb4c6a58p@chrX:47895575..47895589, +
1.17e-33FFCP PHASE1:Hg19::chrX:47895575..47895589,+#_02c3b06f3393a388b5abf6c6cb4c6a58p@chrX:47895575..47895589, +
1.17e-33FFCP PHASE1:Hg19::chr14:61929802..61929817,+#_02c3b06f3393a388b5abf6c6cb4c6a58p35@PRKCH
1.17e-33FFCP PHASE2:Hg19::chr14:61929802..61929817,+#_02c3b06f3393a388b5abf6c6cb4c6a58p35@PRKCH
3.6e-33FFCP PHASE2:Hg19::chr7:30792938..30792970,+#_f9a48a379df1a65e04254686c8677f6ap@chr7:30792938..30792970, +
3.6e-33FFCP PHASE1:Hg19::chr7:30792938..30792970,+#_f9a48a379df1a65e04254686c8677f6ap@chr7:30792938..30792970, +
3.61e-33FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_27d77a879f9d13e0cae63262dccb9bfdp@chr11:81849982..81850000, +
3.61e-33FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_27d77a879f9d13e0cae63262dccb9bfdp@chr11:81849982..81850000, +
3.61e-33FFCP PHASE1:Mm9::chr5:77778263..77778301,+#_27d77a879f9d13e0cae63262dccb9bfdp@chr5:77778263..77778301, +
3.61e-33FFCP PHASE2:Mm9::chr5:77778263..77778301,+#_27d77a879f9d13e0cae63262dccb9bfdp@chr5:77778263..77778301, +
5.97e-33FFCP PHASE1:Mm9::chr16:37834682..37834693,+#_43e36a3ec563ca87c2585d79bd49d1c8p@chr16:37834682..37834693, +
5.97e-33FFCP PHASE2:Mm9::chr16:37834682..37834693,+#_43e36a3ec563ca87c2585d79bd49d1c8p@chr16:37834682..37834693, +
7.68e-33FFCP PHASE1:Mm9::chr3:88420206..88420215,+#_40ea2dcfeded0169c2d84d3bd0c2f9a6p18@Arhgef2
7.68e-33FFCP PHASE1:Mm9::chr13:5863732..5863743,+#_40ea2dcfeded0169c2d84d3bd0c2f9a6p@chr13:5863732..5863743, +
7.68e-33FFCP PHASE2:Mm9::chr13:5863732..5863743,+#_40ea2dcfeded0169c2d84d3bd0c2f9a6p@chr13:5863732..5863743, +
7.68e-33FFCP PHASE2:Mm9::chr3:88420206..88420215,+#_40ea2dcfeded0169c2d84d3bd0c2f9a6p18@Arhgef2
2.03e-32FFCP PHASE1:Hg19::chr11:117152313..117152356,+#_3b6eed4fef49f3a6946792b7e9d86f39p4@RNF214
2.03e-32FFCP PHASE2:Hg19::chr11:117152313..117152356,+#_3b6eed4fef49f3a6946792b7e9d86f39p4@RNF214

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000737&oldid=3271996"