DOID:7: Difference between revisions
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{{DOID | {{DOID | ||
| | |alt_id=DOID:1;;DOID:2;;DOID:5;;DOID:71;;DOID:72;;DOID:8 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A disease that manifests in a defined anatomical structure." [DO:wk\,ls, URL:http://www2.merriam-webster.com/cgi-bin/mwmednlm?book | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=DOID:7 | |||
|is_a=DOID:4 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=disease of anatomical entity | |||
|namespace=disease_ontology | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | |property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Revision as of 10:36, 12 September 2014
| Name: | disease of anatomical entity |
|---|---|
| Namespace: | disease_ontology |
| Definition: | "A disease that manifests in a defined anatomical structure." [DO:wk\,ls, URL:http://www2.merriam-webster.com/cgi-bin/mwmednlm?book |
| Alt_id: |
DOID:1 DOID:2 DOID:5 DOID:71 DOID:72 DOID:8 |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:4(disease) |
|---|
Children
| is a: | FF:0100372 (bone cancer cell),FF:0102817 (esophageal cancer cell line),FF:10810-111A9 (adrenal cortex adenocarcinoma cell line:SW-13),DOID:1287 (cardiovascular system disease),DOID:1579 (respiratory system disease),DOID:17 (musculoskeletal system disease),DOID:2914 (immune system disease),DOID:77 (gastrointestinal system disease),DOID:863 (nervous system disease) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10050-101G5 (heart, adult, diseased post-infarction, donor1)
- 10051-101G6 (heart, adult, diseased, donor1)
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10428-106D5 (anaplastic carcinoma cell line:8305C)
- 10432-106D9 (bile duct carcinoma cell line:HuCCT1)
- 10434-106E2 (oral squamous cell carcinoma cell line:Ca9-22)
- 10437-106E5 (papillary adenocarcinoma cell line:8505C)
- 10439-106E7 (prostate cancer cell line:PC-3)
- 10440-106E8
... further results Mouse (Mus musculus)
- 10050-101G5 (heart, adult, diseased post-infarction, donor1)
- 10051-101G6 (heart, adult, diseased, donor1)
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10428-106D5 (anaplastic carcinoma cell line:8305C)
- 10432-106D9 (bile duct carcinoma cell line:HuCCT1)
- 10434-106E2 (oral squamous cell carcinoma cell line:Ca9-22)
- 10437-106E5 (papillary adenocarcinoma cell line:8505C)
- 10439-106E7 (prostate cancer cell line:PC-3)
- 10440-106E8
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:7 (disease of anatomical entity), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.3e-21 | FFCP PHASE1:Hg19::chr12:53359307..53359335,+#_e61fac9150e439a60bac18efc0ea231e | p@chr12:53359307..53359335, + |
| 1.3e-21 | FFCP PHASE2:Hg19::chr12:53359307..53359335,+#_e61fac9150e439a60bac18efc0ea231e | p@chr12:53359307..53359335, + |
| 1.54e-21 | FFCP PHASE1:Hg19::chr6:112114955..112114966,-#_9b6e744e6910c7ddd2f9d00e3014686c | p26@FYN |
| 1.54e-21 | FFCP PHASE2:Hg19::chr6:112114955..112114966,-#_9b6e744e6910c7ddd2f9d00e3014686c | p26@FYN |
| 4.38e-21 | FFCP PHASE1:Hg19::chr10:106013815..106013828,+#_7b357a2babd01a9a7b766cbecff511d1 | p9@GSTO1 |
| 4.38e-21 | FFCP PHASE2:Hg19::chr7:138250447..138250450,-#_7b357a2babd01a9a7b766cbecff511d1 | p@chr7:138250447..138250450, - |
| 4.38e-21 | FFCP PHASE2:Hg19::chr7:7222548..7222558,+#_7b357a2babd01a9a7b766cbecff511d1 | p@chr7:7222548..7222558, + |
| 4.38e-21 | FFCP PHASE2:Hg19::chrX:50174557..50174568,-#_7b357a2babd01a9a7b766cbecff511d1 | p@chrX:50174557..50174568, - |
| 4.38e-21 | FFCP PHASE1:Hg19::chrX:74869077..74869082,-#_7b357a2babd01a9a7b766cbecff511d1 | p@chrX:74869077..74869082, - |
| 4.38e-21 | FFCP PHASE1:Hg19::chr1:1874589..1874599,+#_7b357a2babd01a9a7b766cbecff511d1 | p@chr1:1874589..1874599, + |
| 4.38e-21 | FFCP PHASE1:Hg19::chr8:146051115..146051126,-#_7b357a2babd01a9a7b766cbecff511d1 | p@chr8:146051115..146051126, - |
| 4.38e-21 | FFCP PHASE1:Hg19::chr2:242710114..242710126,+#_7b357a2babd01a9a7b766cbecff511d1 | p@chr2:242710114..242710126, + |
| 4.38e-21 | FFCP PHASE1:Hg19::chr7:138250447..138250450,-#_7b357a2babd01a9a7b766cbecff511d1 | p@chr7:138250447..138250450, - |
| 4.38e-21 | FFCP PHASE2:Hg19::chr20:62667589..62667598,+#_7b357a2babd01a9a7b766cbecff511d1 | p9@LINC00176 |
| 4.38e-21 | FFCP PHASE1:Hg19::chr17:74574500..74574512,-#_7b357a2babd01a9a7b766cbecff511d1 | p@chr17:74574500..74574512, - |
| 4.38e-21 | FFCP PHASE1:Hg19::chr7:7222548..7222558,+#_7b357a2babd01a9a7b766cbecff511d1 | p@chr7:7222548..7222558, + |
| 4.38e-21 | FFCP PHASE2:Hg19::chr2:242710131..242710142,+#_7b357a2babd01a9a7b766cbecff511d1 | p@chr2:242710131..242710142, + |
| 4.38e-21 | FFCP PHASE1:Hg19::chr20:62667589..62667598,+#_7b357a2babd01a9a7b766cbecff511d1 | p9@LINC00176 |
| 4.38e-21 | FFCP PHASE2:Hg19::chr17:41327771..41327784,+#_7b357a2babd01a9a7b766cbecff511d1 | p2@CU679501 |
| 4.38e-21 | FFCP PHASE1:Hg19::chr2:11505541..11505552,-#_7b357a2babd01a9a7b766cbecff511d1 | p2@ENST00000430897 |
| 4.38e-21 | FFCP PHASE1:Hg19::chrX:50174557..50174568,-#_7b357a2babd01a9a7b766cbecff511d1 | p@chrX:50174557..50174568, - |
| 4.38e-21 | FFCP PHASE1:Hg19::chr2:242710131..242710142,+#_7b357a2babd01a9a7b766cbecff511d1 | p@chr2:242710131..242710142, + |
| 4.38e-21 | FFCP PHASE1:Hg19::chr17:41327771..41327784,+#_7b357a2babd01a9a7b766cbecff511d1 | p2@CU679501 |
| 4.38e-21 | FFCP PHASE2:Hg19::chr10:106013815..106013828,+#_7b357a2babd01a9a7b766cbecff511d1 | p9@GSTO1 |
| 4.38e-21 | FFCP PHASE2:Hg19::chr9:33816391..33816411,+#_7b357a2babd01a9a7b766cbecff511d1 | p@chr9:33816391..33816411, + |
| 4.38e-21 | FFCP PHASE2:Hg19::chrX:50174615..50174630,-#_7b357a2babd01a9a7b766cbecff511d1 | p@chrX:50174615..50174630, - |
| 4.38e-21 | FFCP PHASE2:Hg19::chr17:14276770..14276781,+#_7b357a2babd01a9a7b766cbecff511d1 | p@chr17:14276770..14276781, + |
| 4.38e-21 | FFCP PHASE2:Hg19::chr7:44581054..44581057,+#_7b357a2babd01a9a7b766cbecff511d1 | p@chr7:44581054..44581057, + |
| 4.38e-21 | FFCP PHASE1:Hg19::chrX:50174615..50174630,-#_7b357a2babd01a9a7b766cbecff511d1 | p@chrX:50174615..50174630, - |
| 4.38e-21 | FFCP PHASE2:Hg19::chr15:33180439..33180446,-#_7b357a2babd01a9a7b766cbecff511d1 | p@chr15:33180439..33180446, - |
| 4.38e-21 | FFCP PHASE1:Hg19::chr17:14276770..14276781,+#_7b357a2babd01a9a7b766cbecff511d1 | p@chr17:14276770..14276781, + |
| 4.38e-21 | FFCP PHASE1:Hg19::chr7:44581054..44581057,+#_7b357a2babd01a9a7b766cbecff511d1 | p@chr7:44581054..44581057, + |
| 4.38e-21 | FFCP PHASE2:Hg19::chrX:50174632..50174645,-#_7b357a2babd01a9a7b766cbecff511d1 | p@chrX:50174632..50174645, - |
| 4.38e-21 | FFCP PHASE1:Hg19::chr9:33816391..33816411,+#_7b357a2babd01a9a7b766cbecff511d1 | p@chr9:33816391..33816411, + |
| 4.38e-21 | FFCP PHASE2:Hg19::chr17:74574500..74574512,-#_7b357a2babd01a9a7b766cbecff511d1 | p@chr17:74574500..74574512, - |
| 4.38e-21 | FFCP PHASE1:Hg19::chr15:33180439..33180446,-#_7b357a2babd01a9a7b766cbecff511d1 | p@chr15:33180439..33180446, - |
| 4.38e-21 | FFCP PHASE2:Hg19::chr8:146051115..146051126,-#_7b357a2babd01a9a7b766cbecff511d1 | p@chr8:146051115..146051126, - |
| 4.38e-21 | FFCP PHASE2:Hg19::chrX:74869077..74869082,-#_7b357a2babd01a9a7b766cbecff511d1 | p@chrX:74869077..74869082, - |
| 4.38e-21 | FFCP PHASE2:Hg19::chr1:1874589..1874599,+#_7b357a2babd01a9a7b766cbecff511d1 | p@chr1:1874589..1874599, + |
| 4.38e-21 | FFCP PHASE1:Hg19::chrX:50174632..50174645,-#_7b357a2babd01a9a7b766cbecff511d1 | p@chrX:50174632..50174645, - |
| 4.38e-21 | FFCP PHASE2:Hg19::chr2:242710114..242710126,+#_7b357a2babd01a9a7b766cbecff511d1 | p@chr2:242710114..242710126, + |
| 4.38e-21 | FFCP PHASE2:Hg19::chr2:11505541..11505552,-#_7b357a2babd01a9a7b766cbecff511d1 | p2@ENST00000430897 |
| 4.21e-20 | FFCP PHASE1:Hg19::chr14:38060540..38060566,-#_ae687dd3c60170c81b3d357d3fc631ca | p@chr14:38060540..38060566, - |
| 4.21e-20 | FFCP PHASE2:Hg19::chr14:38060540..38060566,-#_ae687dd3c60170c81b3d357d3fc631ca | p@chr14:38060540..38060566, - |
| 1.19e-19 | FFCP PHASE2:Hg19::chr9:139693759..139693793,+#_c413e67519c27e93cba2b28aa7f92980 | p4@KIAA1984 |
| 1.19e-19 | FFCP PHASE1:Hg19::chr9:139693759..139693793,+#_c413e67519c27e93cba2b28aa7f92980 | p4@KIAA1984 |
| 1.06e-18 | FFCP PHASE2:Hg19::chr14:38064572..38064584,-#_6c8d6dbf6a65087d92652ddd34388b96 | p5@FOXA1 |
| 1.06e-18 | FFCP PHASE1:Hg19::chr14:38064572..38064584,-#_6c8d6dbf6a65087d92652ddd34388b96 | p5@FOXA1 |
| 1.65e-18 | FFCP PHASE2:Hg19::chr9:139693886..139693910,+#_d3a994a5f5df01707bcbe57f1015c5b2 | p5@KIAA1984 |
| 1.65e-18 | FFCP PHASE1:Hg19::chr9:139693886..139693910,+#_d3a994a5f5df01707bcbe57f1015c5b2 | p5@KIAA1984 |
| 1.71e-18 | FFCP PHASE1:Hg19::chr2:11679852..11679866,+#_3a05f7490556304bd904c70e01c3c5b5 | p18@GREB1 |
| 1.71e-18 | FFCP PHASE2:Hg19::chr2:11679852..11679866,+#_3a05f7490556304bd904c70e01c3c5b5 | p18@GREB1 |
| 1.87e-18 | FFCP PHASE2:Hg19::chr17:62770351..62770363,-#_eff4564b7ebc71de7b2b0e1906163fa3 | p@chr17:62770351..62770363, - |
| 1.87e-18 | FFCP PHASE1:Hg19::chr17:62770351..62770363,-#_eff4564b7ebc71de7b2b0e1906163fa3 | p@chr17:62770351..62770363, - |
| 1.68e-17 | FFCP PHASE2:Hg19::chr2:27579764..27579787,+#_69a0c6e283e41414dc7f6775883a565d | p8@ENST00000453289 |
| 1.68e-17 | FFCP PHASE1:Hg19::chr2:27579764..27579787,+#_69a0c6e283e41414dc7f6775883a565d | p8@ENST00000453289 |
| 2.66e-17 | FFCP PHASE2:Hg19::chr3:115511342..115511357,-#_1e584f57fae3c24dde5fd815d766457e | p@chr3:115511342..115511357, - |
| 2.66e-17 | FFCP PHASE1:Hg19::chr3:115511342..115511357,-#_1e584f57fae3c24dde5fd815d766457e | p@chr3:115511342..115511357, - |
| 2.97e-17 | FFCP PHASE1:Hg19::chr6:142623595..142623600,+#_3374de77e417b204de21956b7b2783e5 | p14@GPR126 |
| 2.97e-17 | FFCP PHASE2:Hg19::chr6:142623595..142623600,+#_3374de77e417b204de21956b7b2783e5 | p14@GPR126 |
| 3.49e-17 | FFCP PHASE2:Hg19::chr5:172721722..172721748,-#_b16130a0a0edab23a9f6b0e45160d487 | p1@ENST00000501670 |
| 3.49e-17 | FFCP PHASE1:Hg19::chr5:172721722..172721748,-#_b16130a0a0edab23a9f6b0e45160d487 | p1@ENST00000501670 |
| 6.08e-17 | FFCP PHASE1:Hg19::chr9:14868978..14869003,-#_7f4ff3bf5b92a0fe37388d750f6eee74 | p7@FREM1 |
| 6.08e-17 | FFCP PHASE2:Hg19::chr6:34759206..34759244,+#_7f4ff3bf5b92a0fe37388d750f6eee74 | p@chr6:34759206..34759244, + |
| 6.08e-17 | FFCP PHASE2:Hg19::chr2:242750139..242750158,-#_7f4ff3bf5b92a0fe37388d750f6eee74 | p3@D55640 |
| 6.08e-17 | FFCP PHASE2:Hg19::chr3:197096551..197096578,+#_7f4ff3bf5b92a0fe37388d750f6eee74 | p@chr3:197096551..197096578, + |
| 6.08e-17 | FFCP PHASE1:Hg19::chr6:34759206..34759244,+#_7f4ff3bf5b92a0fe37388d750f6eee74 | p@chr6:34759206..34759244, + |
| 6.08e-17 | FFCP PHASE1:Hg19::chr2:242750139..242750158,-#_7f4ff3bf5b92a0fe37388d750f6eee74 | p3@D55640 |
| 6.08e-17 | FFCP PHASE1:Hg19::chr3:197096551..197096578,+#_7f4ff3bf5b92a0fe37388d750f6eee74 | p@chr3:197096551..197096578, + |
| 6.08e-17 | FFCP PHASE2:Hg19::chr2:242710152..242710173,+#_7f4ff3bf5b92a0fe37388d750f6eee74 | p@chr2:242710152..242710173, + |
| 6.08e-17 | FFCP PHASE2:Hg19::chr9:14868978..14869003,-#_7f4ff3bf5b92a0fe37388d750f6eee74 | p7@FREM1 |
| 6.08e-17 | FFCP PHASE1:Hg19::chr2:242710152..242710173,+#_7f4ff3bf5b92a0fe37388d750f6eee74 | p@chr2:242710152..242710173, + |
| 6.08e-17 | FFCP PHASE2:Hg19::chr2:242750092..242750115,-#_7f4ff3bf5b92a0fe37388d750f6eee74 | p1@D55640 |
| 6.08e-17 | FFCP PHASE1:Hg19::chr2:242750092..242750115,-#_7f4ff3bf5b92a0fe37388d750f6eee74 | p1@D55640 |
| 6.34e-17 | FFCP PHASE2:Hg19::chr20:62655876..62655885,+#_5ed988e4f9f9c567542994341307ab88 | p@chr20:62655876..62655885, + |
| 6.34e-17 | FFCP PHASE2:Hg19::chrX:50174653..50174669,-#_5ed988e4f9f9c567542994341307ab88 | p@chrX:50174653..50174669, - |
| 6.34e-17 | FFCP PHASE1:Hg19::chr17:41327736..41327748,+#_5ed988e4f9f9c567542994341307ab88 | p3@CU679501 |
| 6.34e-17 | FFCP PHASE1:Hg19::chr16:30124030..30124050,-#_5ed988e4f9f9c567542994341307ab88 | p@chr16:30124030..30124050, - |
| 6.34e-17 | FFCP PHASE1:Hg19::chr20:62655876..62655885,+#_5ed988e4f9f9c567542994341307ab88 | p@chr20:62655876..62655885, + |
| 6.34e-17 | FFCP PHASE1:Hg19::chrX:50174653..50174669,-#_5ed988e4f9f9c567542994341307ab88 | p@chrX:50174653..50174669, - |
| 6.34e-17 | FFCP PHASE2:Hg19::chr8:17773397..17773420,-#_5ed988e4f9f9c567542994341307ab88 | p@chr8:17773397..17773420, - |
| 6.34e-17 | FFCP PHASE1:Hg19::chr12:7023055..7023065,+#_5ed988e4f9f9c567542994341307ab88 | p30@ENO2 |
| 6.34e-17 | FFCP PHASE1:Hg19::chr8:17773397..17773420,-#_5ed988e4f9f9c567542994341307ab88 | p@chr8:17773397..17773420, - |
| 6.34e-17 | FFCP PHASE2:Hg19::chr20:52750070..52750079,-#_5ed988e4f9f9c567542994341307ab88 | p@chr20:52750070..52750079, - |
| 6.34e-17 | FFCP PHASE2:Hg19::chr1:9777591..9777605,+#_5ed988e4f9f9c567542994341307ab88 | p@chr1:9777591..9777605, + |
| 6.34e-17 | FFCP PHASE1:Hg19::chr20:52750070..52750079,-#_5ed988e4f9f9c567542994341307ab88 | p@chr20:52750070..52750079, - |
| 6.34e-17 | FFCP PHASE2:Hg19::chr7:138001633..138001637,+#_5ed988e4f9f9c567542994341307ab88 | p@chr7:138001633..138001637, + |
| 6.34e-17 | FFCP PHASE2:Hg19::chr1:3237334..3237343,+#_5ed988e4f9f9c567542994341307ab88 | p@chr1:3237334..3237343, + |
| 6.34e-17 | FFCP PHASE2:Hg19::chr12:7023055..7023065,+#_5ed988e4f9f9c567542994341307ab88 | p30@ENO2 |
| 6.34e-17 | FFCP PHASE1:Hg19::chr7:138001633..138001637,+#_5ed988e4f9f9c567542994341307ab88 | p@chr7:138001633..138001637, + |
| 6.34e-17 | FFCP PHASE1:Hg19::chr1:9777591..9777605,+#_5ed988e4f9f9c567542994341307ab88 | p@chr1:9777591..9777605, + |
| 6.34e-17 | FFCP PHASE2:Hg19::chr17:41327736..41327748,+#_5ed988e4f9f9c567542994341307ab88 | p3@CU679501 |
| 6.34e-17 | FFCP PHASE1:Hg19::chr1:3237334..3237343,+#_5ed988e4f9f9c567542994341307ab88 | p@chr1:3237334..3237343, + |
| 6.34e-17 | FFCP PHASE2:Hg19::chr16:30124030..30124050,-#_5ed988e4f9f9c567542994341307ab88 | p@chr16:30124030..30124050, - |
| 6.89e-17 | FFCP PHASE1:Hg19::chr15:88119982..88120003,+#_7f24062554a889d6e6098ae2105baade | p2@LINC00052 |
| 6.89e-17 | FFCP PHASE2:Hg19::chr15:88119982..88120003,+#_7f24062554a889d6e6098ae2105baade | p2@LINC00052 |
| 7.18e-17 | FFCP PHASE2:Hg19::chr11:46741130..46741141,+#_7cc88257f839d7a2847a4cb766ebab77 | p@chr11:46741130..46741141, + |
| 7.18e-17 | FFCP PHASE1:Hg19::chr11:46741130..46741141,+#_7cc88257f839d7a2847a4cb766ebab77 | p@chr11:46741130..46741141, + |
| 1.67e-16 | FFCP PHASE2:Hg19::chr8:143844567..143844588,+#_960587a0574869007bb3ae2c378d334f | p2@ENST00000523657 |
| 1.67e-16 | FFCP PHASE1:Hg19::chr8:143844567..143844588,+#_960587a0574869007bb3ae2c378d334f | p2@ENST00000523657 |
