CL:0000594: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=skeletal muscle satellite cell | |name=skeletal muscle satellite cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001134 | |part_of=UBERON:0001134 | ||
Latest revision as of 16:35, 12 September 2014
| Name: | skeletal muscle satellite cell |
|---|---|
| Namespace: | FANTOM |
| Definition: | "An elongated, spindle-shaped, quiescent myoblast that are located between the basal lamina and the plasmalemma of the muscle fibres. They are thought to play a role in muscle repair and regeneration." [GOC:tfm, MESH:A.11.635.500.700] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000188(cell of skeletal muscle),CL:0000680(muscle precursor cell) |
|---|---|
| part_of: | UBERON:0001134(skeletal muscle tissue) |
Children
| derives from: | FF:0000165 (human skeletal muscle satellite cell sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11321-117D7 (Skeletal Muscle Satellite Cells, donor2)
- 11397-118D2 (Skeletal Muscle Satellite Cells, donor3)
Mouse (Mus musculus)
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11321-117D7 (Skeletal Muscle Satellite Cells, donor2)
- 11397-118D2 (Skeletal Muscle Satellite Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000594 (skeletal muscle satellite cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.35e-66 | FFCP PHASE2:Hg19::chr4:100126754..100126770,+#_17508f51b4b54bbddb82fdfd7b64646a | p@chr4:100126754..100126770, + |
| 3.35e-66 | FFCP PHASE1:Hg19::chr4:100126754..100126770,+#_17508f51b4b54bbddb82fdfd7b64646a | p@chr4:100126754..100126770, + |
| 9.99e-60 | FFCP PHASE1:Hg19::chr7:81337867..81337871,+#_01f9aa278954b7309d1cb3c68199f737 | p@chr7:81337867..81337871, + |
| 9.99e-60 | FFCP PHASE2:Hg19::chr7:81337867..81337871,+#_01f9aa278954b7309d1cb3c68199f737 | p@chr7:81337867..81337871, + |
| 7.24e-55 | FFCP PHASE1:Hg19::chr2:208104461..208104478,+#_68b9abfc07bb4bd9af906ba253cb3a37 | p3@ENST00000430494 |
| 7.24e-55 | FFCP PHASE2:Hg19::chr2:208104461..208104478,+#_68b9abfc07bb4bd9af906ba253cb3a37 | p3@ENST00000430494 |
| 1.51e-54 | FFCP PHASE2:Hg19::chr13:94958055..94958072,+#_5b747d63915ea14c362a1f6db9ed5a26 | p@chr13:94958055..94958072, + |
| 1.51e-54 | FFCP PHASE1:Hg19::chr13:94958055..94958072,+#_5b747d63915ea14c362a1f6db9ed5a26 | p@chr13:94958055..94958072, + |
| 2.17e-54 | FFCP PHASE1:Hg19::chr13:94958004..94958025,+#_ee18511c5f58c90eb1b5ca893f4febbb | p@chr13:94958004..94958025, + |
| 2.17e-54 | FFCP PHASE2:Hg19::chr13:94958004..94958025,+#_ee18511c5f58c90eb1b5ca893f4febbb | p@chr13:94958004..94958025, + |
| 2.23e-50 | FFCP PHASE1:Hg19::chr2:208104497..208104512,+#_3592541d8ee4c7787eed53200a045ed3 | p2@ENST00000430494 |
| 2.23e-50 | FFCP PHASE2:Hg19::chr2:208104497..208104512,+#_3592541d8ee4c7787eed53200a045ed3 | p2@ENST00000430494 |
| 1.65e-46 | FFCP PHASE2:Hg19::chr2:208175027..208175053,-#_86891087f8b16ccfc6b2b2504e5eddf9 | p@chr2:208175027..208175053, - |
| 1.65e-46 | FFCP PHASE1:Hg19::chr2:208175027..208175053,-#_86891087f8b16ccfc6b2b2504e5eddf9 | p@chr2:208175027..208175053, - |
| 3.19e-38 | FFCP PHASE1:Hg19::chr11:85090268..85090294,-#_2cbc7604ecccae9456cc7eab406a677a | p@chr11:85090268..85090294, - |
| 3.19e-38 | FFCP PHASE2:Hg19::chr11:85090268..85090294,-#_2cbc7604ecccae9456cc7eab406a677a | p@chr11:85090268..85090294, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:87774996..87775001,+#_0c274a0b07c2a2fcbaca7cc1a5dfc7d2 | p@chr8:87774996..87775001, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:87774996..87775001,+#_0c274a0b07c2a2fcbaca7cc1a5dfc7d2 | p@chr8:87774996..87775001, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr13:43382596..43382621,-#_0c274a0b07c2a2fcbaca7cc1a5dfc7d2 | p@chr13:43382596..43382621, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr13:43382596..43382621,-#_0c274a0b07c2a2fcbaca7cc1a5dfc7d2 | p@chr13:43382596..43382621, - |
| 5.31e-27 | FFCP PHASE1:Hg19::chr1:14219676..14219688,+#_084c3d78d003cc6b51902ab7e3378a0d | p@chr1:14219676..14219688, + |
| 5.31e-27 | FFCP PHASE2:Hg19::chr1:14219676..14219688,+#_084c3d78d003cc6b51902ab7e3378a0d | p@chr1:14219676..14219688, + |
| 1.34e-25 | FFCP PHASE1:Hg19::chr8:25902668..25902680,-#_726e64c5c7ca444d693d3f7ad5e0d9fe | p3@EBF2 |
| 1.34e-25 | FFCP PHASE2:Hg19::chr8:25902668..25902680,-#_726e64c5c7ca444d693d3f7ad5e0d9fe | p3@EBF2 |
| 6.54e-25 | FFCP PHASE1:Hg19::chr1:78401534..78401545,+#_6c9fa0dc65f305648e65488f9ad7a8ed | p@chr1:78401534..78401545, + |
| 6.54e-25 | FFCP PHASE2:Hg19::chr1:78401534..78401545,+#_6c9fa0dc65f305648e65488f9ad7a8ed | p@chr1:78401534..78401545, + |
| 2.35e-23 | FFCP PHASE1:Hg19::chr1:78695343..78695353,+#_361163e32201c1088d0506cc6e0aa43d | p2@ENST00000413519 |
| 2.35e-23 | FFCP PHASE2:Hg19::chr1:78695343..78695353,+#_361163e32201c1088d0506cc6e0aa43d | p2@ENST00000413519 |
| 3.27e-23 | FFCP PHASE1:Hg19::chr9:98577619..98577666,+#_8c4216a57585989f6fc873abf38c2c96 | p@chr9:98577619..98577666, + |
| 3.27e-23 | FFCP PHASE2:Hg19::chr9:98577619..98577666,+#_8c4216a57585989f6fc873abf38c2c96 | p@chr9:98577619..98577666, + |
| 5.15e-23 | FFCP PHASE2:Hg19::chr2:189387474..189387512,+#_92dbb479088debe5a8d9c89d00455bd8 | p11@GULP1 |
| 5.15e-23 | FFCP PHASE1:Hg19::chr2:189387474..189387512,+#_92dbb479088debe5a8d9c89d00455bd8 | p11@GULP1 |
| 7.42e-22 | FFCP PHASE1:Hg19::chr7:81400148..81400151,+#_bcf4940bfb921d8c24c2e5cedbef9e41 | p@chr7:81400148..81400151, + |
| 7.42e-22 | FFCP PHASE2:Hg19::chr7:81400148..81400151,+#_bcf4940bfb921d8c24c2e5cedbef9e41 | p@chr7:81400148..81400151, + |
| 1.96e-21 | FFCP PHASE1:Hg19::chr7:81319697..81319713,+#_3b7d1a0a2bbcf0992e000a39f5c7bfbe | p@chr7:81319697..81319713, + |
| 1.96e-21 | FFCP PHASE2:Hg19::chr7:81319697..81319713,+#_3b7d1a0a2bbcf0992e000a39f5c7bfbe | p@chr7:81319697..81319713, + |
| 2.17e-21 | FFCP PHASE1:Hg19::chr13:94958134..94958164,+#_888111c315f96ceffae8ca7e5053496d | p@chr13:94958134..94958164, + |
| 2.17e-21 | FFCP PHASE2:Hg19::chr13:94958134..94958164,+#_888111c315f96ceffae8ca7e5053496d | p@chr13:94958134..94958164, + |
| 2.4e-21 | FFCP PHASE1:Hg19::chr7:81319656..81319686,+#_87421108aa5b0a120cd9ad564e85a0d6 | p@chr7:81319656..81319686, + |
| 2.4e-21 | FFCP PHASE2:Hg19::chr7:81319656..81319686,+#_87421108aa5b0a120cd9ad564e85a0d6 | p@chr7:81319656..81319686, + |
| 4.94e-20 | FFCP PHASE2:Hg19::chr3:24547235..24547267,-#_28f58484f44a1e9ff343bdfc48a88f32 | p@chr3:24547235..24547267, - |
| 4.94e-20 | FFCP PHASE1:Hg19::chr3:24547235..24547267,-#_28f58484f44a1e9ff343bdfc48a88f32 | p@chr3:24547235..24547267, - |
| 2.27e-19 | FFCP PHASE2:Hg19::chr6:52001069..52001073,+#_f0c0b2697d096aa9b1f3b9d79bfe5161 | p@chr6:52001069..52001073, + |
| 2.27e-19 | FFCP PHASE1:Hg19::chr6:52001069..52001073,+#_f0c0b2697d096aa9b1f3b9d79bfe5161 | p@chr6:52001069..52001073, + |
| 2.76e-18 | FFCP PHASE1:Hg19::chr7:15713220..15713223,-#_a917f2ed68233f411714a93800fc82ea | p@chr7:15713220..15713223, - |
| 2.76e-18 | FFCP PHASE2:Hg19::chr7:15713220..15713223,-#_a917f2ed68233f411714a93800fc82ea | p@chr7:15713220..15713223, - |
| 8.4e-18 | FFCP PHASE1:Hg19::chr2:145161707..145161728,-#_20030551f2aec37333b179c52d58ccfe | p@chr2:145161707..145161728, - |
| 8.4e-18 | FFCP PHASE2:Hg19::chr2:145161707..145161728,-#_20030551f2aec37333b179c52d58ccfe | p@chr2:145161707..145161728, - |
| 1.12e-17 | FFCP PHASE2:Hg19::chr1:65366744..65366755,-#_552290f25e9583ce3ea1010015bf1b34 | p@chr1:65366744..65366755, - |
| 1.12e-17 | FFCP PHASE1:Hg19::chr1:65366744..65366755,-#_552290f25e9583ce3ea1010015bf1b34 | p@chr1:65366744..65366755, - |
| 1.28e-17 | FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_4b7c62964ccf1c1fce4ad2142b0af084 | p@chr2:241897363..241897398, + |
| 1.28e-17 | FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_4b7c62964ccf1c1fce4ad2142b0af084 | p@chr2:241897363..241897398, + |
| 1.39e-17 | FFCP PHASE1:Hg19::chr2:233404395..233404408,+#_80586c9b6b2e81e1466c86dd1fc6df1c | p2@CHRNG |
| 1.39e-17 | FFCP PHASE2:Hg19::chr2:233404395..233404408,+#_80586c9b6b2e81e1466c86dd1fc6df1c | p2@CHRNG |
| 1.05e-16 | FFCP PHASE2:Hg19::chr1:183247759..183247772,-#_f164040e256024d1d756b24544484fa0 | p4@NMNAT2 |
| 1.05e-16 | FFCP PHASE1:Hg19::chr1:183247759..183247772,-#_f164040e256024d1d756b24544484fa0 | p4@NMNAT2 |
| 1.53e-16 | FFCP PHASE1:Hg19::chr2:208104573..208104589,+#_a018782ab157523957f9e74e37d6fcab | p1@ENST00000430494 |
| 1.53e-16 | FFCP PHASE2:Hg19::chr2:208104573..208104589,+#_a018782ab157523957f9e74e37d6fcab | p1@ENST00000430494 |
| 1.74e-16 | FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_a0416ce09d9f88dc336c6fc474d64ac9 | p@chr9:16138889..16138902, - |
| 1.74e-16 | FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_a0416ce09d9f88dc336c6fc474d64ac9 | p@chr9:16138889..16138902, - |
| 4.3e-16 | FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_757b91fa4af03ac05b4de8f358c90d6b | p1@ENST00000413519 |
| 4.3e-16 | FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_757b91fa4af03ac05b4de8f358c90d6b | p1@ENST00000413519 |
| 6.26e-16 | FFCP PHASE2:Hg19::chr5:53776469..53776484,+#_8f4a3d1aedfb62e623cfe89c09c7fd76 | p@chr5:53776469..53776484, + |
| 6.26e-16 | FFCP PHASE1:Hg19::chr5:53776469..53776484,+#_8f4a3d1aedfb62e623cfe89c09c7fd76 | p@chr5:53776469..53776484, + |
| 1.01e-15 | FFCP PHASE1:Hg19::chr12:88813132..88813143,-#_9e744602328de66f6983f581534c6a54 | p@chr12:88813132..88813143, - |
| 1.01e-15 | FFCP PHASE2:Hg19::chr12:88813132..88813143,-#_9e744602328de66f6983f581534c6a54 | p@chr12:88813132..88813143, - |
| 2.55e-15 | FFCP PHASE1:Hg19::chr9:16871214..16871260,-#_a43e1e586093599be701665f7ca0d7ce | p11@BNC2 |
| 2.55e-15 | FFCP PHASE2:Hg19::chr9:16871214..16871260,-#_a43e1e586093599be701665f7ca0d7ce | p11@BNC2 |
| 3.22e-15 | FFCP PHASE1:Hg19::chr12:54359771..54359813,+#_2102dd065701d94df2dd46c6171309e6 | p@chr12:54359771..54359813, + |
| 3.22e-15 | FFCP PHASE2:Hg19::chr12:54359771..54359813,+#_2102dd065701d94df2dd46c6171309e6 | p@chr12:54359771..54359813, + |
| 3.69e-15 | FFCP PHASE1:Hg19::chr17:10560619..10560631,-#_729db635c74d1da8aeb9b3243f66bd62 | p1@MYH3 |
| 3.69e-15 | FFCP PHASE2:Hg19::chr17:10560619..10560631,-#_729db635c74d1da8aeb9b3243f66bd62 | p1@MYH3 |
| 1.22e-14 | FFCP PHASE1:Hg19::chr2:102635753..102635766,+#_bdb4f8d488f24dadabf7dff041288267 | p@chr2:102635753..102635766, + |
| 1.22e-14 | FFCP PHASE2:Hg19::chr2:102635753..102635766,+#_bdb4f8d488f24dadabf7dff041288267 | p@chr2:102635753..102635766, + |
| 1.4e-14 | FFCP PHASE1:Hg19::chr13:36766022..36766034,-#_dabc18fa4e8a85ad572368d0a2ee5b87 | p@chr13:36766022..36766034, - |
| 1.4e-14 | FFCP PHASE2:Hg19::chr13:36766022..36766034,-#_dabc18fa4e8a85ad572368d0a2ee5b87 | p@chr13:36766022..36766034, - |
| 1.4e-14 | FFCP PHASE1:Hg19::chr9:16614953..16614957,-#_dabc18fa4e8a85ad572368d0a2ee5b87 | p@chr9:16614953..16614957, - |
| 1.4e-14 | FFCP PHASE2:Hg19::chr9:16614953..16614957,-#_dabc18fa4e8a85ad572368d0a2ee5b87 | p@chr9:16614953..16614957, - |
| 3.17e-14 | FFCP PHASE2:Hg19::chr3:154797315..154797322,+#_10925274be209ad4329d9d4e82b0c691 | p24@MME |
| 3.17e-14 | FFCP PHASE1:Hg19::chr3:154797315..154797322,+#_10925274be209ad4329d9d4e82b0c691 | p24@MME |
| 3.87e-14 | FFCP PHASE1:Hg19::chr21:30503294..30503312,+#_474bc0e2b630652cb86e77fcb376e329 | p10@C21orf7 |
| 3.87e-14 | FFCP PHASE2:Hg19::chr21:30503294..30503312,+#_474bc0e2b630652cb86e77fcb376e329 | p10@C21orf7 |
| 6.96e-14 | FFCP PHASE1:Hg19::chr9:136390071..136390087,-#_e22859e510fe4c9f839172bd6ae8f9b6 | p1@TMEM8C |
| 6.96e-14 | FFCP PHASE2:Hg19::chr9:136390071..136390087,-#_e22859e510fe4c9f839172bd6ae8f9b6 | p1@TMEM8C |
| 3.16e-13 | FFCP PHASE1:Hg19::chr13:25591521..25591529,+#_acbc6d4ca000a7928db57648f20deab9 | p@chr13:25591521..25591529, + |
| 3.16e-13 | FFCP PHASE2:Hg19::chr13:25591521..25591529,+#_acbc6d4ca000a7928db57648f20deab9 | p@chr13:25591521..25591529, + |
| 4.61e-13 | FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_ce97986d92b33dfe648a90c7d200b112 | p1@MGC27382 |
| 4.61e-13 | FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_ce97986d92b33dfe648a90c7d200b112 | p1@MGC27382 |
| 5.81e-13 | FFCP PHASE1:Hg19::chr1:201398985..201399000,-#_4640b0608d78c59b2bfa1a55a8062b30 | p2@TNNI1 |
| 5.81e-13 | FFCP PHASE2:Hg19::chr1:201398985..201399000,-#_4640b0608d78c59b2bfa1a55a8062b30 | p2@TNNI1 |
| 6.81e-13 | FFCP PHASE1:Hg19::chr9:16689157..16689162,-#_b981d7df2713ff58420da4dc0fa7b6da | p@chr9:16689157..16689162, - |
| 6.81e-13 | FFCP PHASE2:Hg19::chr9:16689157..16689162,-#_b981d7df2713ff58420da4dc0fa7b6da | p@chr9:16689157..16689162, - |
| 1.69e-12 | FFCP PHASE1:Hg19::chr2:216235008..216235020,-#_bfde5574b4aa2f63987e4186a8b2f197 | p70@FN1 |
| 1.69e-12 | FFCP PHASE2:Hg19::chr2:216235008..216235020,-#_bfde5574b4aa2f63987e4186a8b2f197 | p70@FN1 |
| 2.07e-12 | FFCP PHASE1:Hg19::chr9:23769271..23769295,-#_1f86c97312a4e4e2fde6db31eb5b9b3f | p@chr9:23769271..23769295, - |
| 2.07e-12 | FFCP PHASE2:Hg19::chr9:23769271..23769295,-#_1f86c97312a4e4e2fde6db31eb5b9b3f | p@chr9:23769271..23769295, - |
| 2.31e-12 | FFCP PHASE1:Hg19::chr7:107720432..107720443,+#_acabff2aac97de34f063033df5bd6d59 | p@chr7:107720432..107720443, + |
| 2.31e-12 | FFCP PHASE2:Hg19::chr7:107720432..107720443,+#_acabff2aac97de34f063033df5bd6d59 | p@chr7:107720432..107720443, + |
| 2.59e-12 | FFCP PHASE1:Hg19::chr16:70732811..70732824,-#_943899716a2db9cbf468775f299e17f7 | p@chr16:70732811..70732824, - |
| 2.59e-12 | FFCP PHASE2:Hg19::chr16:70732811..70732824,-#_943899716a2db9cbf468775f299e17f7 | p@chr16:70732811..70732824, - |
