DOID:1115: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=sarcoma | |name=sarcoma | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:48, 12 September 2014
| Name: | sarcoma | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from embryonic mesoderm." [url:http://en.wikipedia.org/wiki/Sarcoma] | ||
| Xrefs: |
| ||
| Synonyms: |
"connective and soft tissue neoplasm" EXACT [] "tumor of soft tissue and skeleton" EXACT [NCI2004_11_17:C3810] | ||
| Alt_id: | DOID:3936 |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:0050687(cell type cancer) |
|---|
Children
| is a: | DOID:4235 (spindle cell sarcoma) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 10448-106F7 (endometrial stromal sarcoma cell line:OMC-9)
- 10477-106I9 (rhabdomyosarcoma cell line:RMS-YM)
- 10600-108E6 (myxofibrosarcoma cell line:MFH-ino)
- 10626-108H5
- 10642-109A3 (carcinosarcoma cell line:JHUCS-1)
- 10684-109E9 (myxofibrosarcoma cell line:NMFH-1)
- 10700-109G7 (chondrosarcoma cell line:SW 1353)
- 10703-109H1 (carcinoid cell line:NCI-H1770)
... further results Mouse (Mus musculus)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 10448-106F7 (endometrial stromal sarcoma cell line:OMC-9)
- 10477-106I9 (rhabdomyosarcoma cell line:RMS-YM)
- 10600-108E6 (myxofibrosarcoma cell line:MFH-ino)
- 10626-108H5
- 10642-109A3 (carcinosarcoma cell line:JHUCS-1)
- 10684-109E9 (myxofibrosarcoma cell line:NMFH-1)
- 10700-109G7 (chondrosarcoma cell line:SW 1353)
- 10703-109H1 (carcinoid cell line:NCI-H1770)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:1115 (sarcoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.23e-25 | FFCP PHASE2:Hg19::chr7:155276800..155276807,+#_7f0062634174b963046c0a9ddc5c47e7 | p@chr7:155276800..155276807, + |
| 4.23e-25 | FFCP PHASE1:Hg19::chr7:155276800..155276807,+#_7f0062634174b963046c0a9ddc5c47e7 | p@chr7:155276800..155276807, + |
| 4.7e-23 | FFCP PHASE2:Hg19::chr4:147559302..147559313,+#_9a8973dc710f8b73393bc24bffb00012 | p@chr4:147559302..147559313, + |
| 4.7e-23 | FFCP PHASE1:Hg19::chr4:147559302..147559313,+#_9a8973dc710f8b73393bc24bffb00012 | p@chr4:147559302..147559313, + |
| 5.71e-21 | FFCP PHASE2:Hg19::chr8:114449612..114449615,-#_323589c7ee45bbf87e069d47572bc4fa | p10@CSMD3 |
| 5.71e-21 | FFCP PHASE1:Hg19::chr10:135140510..135140524,-#_323589c7ee45bbf87e069d47572bc4fa | p@chr10:135140510..135140524, - |
| 5.71e-21 | FFCP PHASE2:Hg19::chr10:135140510..135140524,-#_323589c7ee45bbf87e069d47572bc4fa | p@chr10:135140510..135140524, - |
| 5.71e-21 | FFCP PHASE1:Hg19::chr2:156009264..156009270,-#_323589c7ee45bbf87e069d47572bc4fa | p@chr2:156009264..156009270, - |
| 5.71e-21 | FFCP PHASE2:Hg19::chr8:114449616..114449629,-#_323589c7ee45bbf87e069d47572bc4fa | p3@CSMD3 |
| 5.71e-21 | FFCP PHASE2:Hg19::chr1:172145683..172145699,+#_323589c7ee45bbf87e069d47572bc4fa | p@chr1:172145683..172145699, + |
| 5.71e-21 | FFCP PHASE1:Hg19::chr15:68124311..68124318,+#_323589c7ee45bbf87e069d47572bc4fa | p@chr15:68124311..68124318, + |
| 5.71e-21 | FFCP PHASE1:Hg19::chr8:114449612..114449615,-#_323589c7ee45bbf87e069d47572bc4fa | p10@CSMD3 |
| 5.71e-21 | FFCP PHASE2:Hg19::chr2:156009264..156009270,-#_323589c7ee45bbf87e069d47572bc4fa | p@chr2:156009264..156009270, - |
| 5.71e-21 | FFCP PHASE1:Hg19::chr6:113168012..113168027,-#_323589c7ee45bbf87e069d47572bc4fa | p@chr6:113168012..113168027, - |
| 5.71e-21 | FFCP PHASE1:Hg19::chr12:69678255..69678259,+#_323589c7ee45bbf87e069d47572bc4fa | p1@ENST00000548895 |
| 5.71e-21 | FFCP PHASE1:Hg19::chr10:54780374..54780384,+#_323589c7ee45bbf87e069d47572bc4fa | p@chr10:54780374..54780384, + |
| 5.71e-21 | FFCP PHASE2:Hg19::chr10:54780374..54780384,+#_323589c7ee45bbf87e069d47572bc4fa | p@chr10:54780374..54780384, + |
| 5.71e-21 | FFCP PHASE1:Hg19::chr12:70351867..70351878,+#_323589c7ee45bbf87e069d47572bc4fa | p@chr12:70351867..70351878, + |
| 5.71e-21 | FFCP PHASE1:Hg19::chr8:114449616..114449629,-#_323589c7ee45bbf87e069d47572bc4fa | p3@CSMD3 |
| 5.71e-21 | FFCP PHASE2:Hg19::chr12:69678255..69678259,+#_323589c7ee45bbf87e069d47572bc4fa | p1@ENST00000548895 |
| 5.71e-21 | FFCP PHASE2:Hg19::chr15:68124311..68124318,+#_323589c7ee45bbf87e069d47572bc4fa | p@chr15:68124311..68124318, + |
| 5.71e-21 | FFCP PHASE1:Hg19::chr1:172145683..172145699,+#_323589c7ee45bbf87e069d47572bc4fa | p@chr1:172145683..172145699, + |
| 5.71e-21 | FFCP PHASE2:Hg19::chr12:70351867..70351878,+#_323589c7ee45bbf87e069d47572bc4fa | p@chr12:70351867..70351878, + |
| 5.71e-21 | FFCP PHASE2:Hg19::chr6:113168012..113168027,-#_323589c7ee45bbf87e069d47572bc4fa | p@chr6:113168012..113168027, - |
| 6.86e-21 | FFCP PHASE2:Hg19::chr8:40200877..40200902,-#_297d2011428f7b53c4d44b73ae4263c6 | p1@ENST00000521030 |
| 6.86e-21 | FFCP PHASE1:Hg19::chr8:40200877..40200902,-#_297d2011428f7b53c4d44b73ae4263c6 | p1@ENST00000521030 |
| 1.34e-18 | FFCP PHASE1:Hg19::chr11:104125418..104125428,+#_6b84452a5614ff00e46c6c235c11f5d3 | p@chr11:104125418..104125428, + |
| 1.34e-18 | FFCP PHASE2:Hg19::chr11:104125418..104125428,+#_6b84452a5614ff00e46c6c235c11f5d3 | p@chr11:104125418..104125428, + |
| 6.33e-18 | FFCP PHASE1:Hg19::chr8:40200903..40200914,-#_1a0ab0fb46f1ead121d580af0fafadd7 | p2@ENST00000522486 |
| 6.33e-18 | FFCP PHASE2:Hg19::chr8:40200903..40200914,-#_1a0ab0fb46f1ead121d580af0fafadd7 | p2@ENST00000522486 |
| 8.11e-18 | FFCP PHASE1:Hg19::chr8:40200933..40200967,-#_429076b7cefe43f2bf97bf3b3c659837 | p1@ENST00000522486 |
| 8.11e-18 | FFCP PHASE2:Hg19::chr8:40200933..40200967,-#_429076b7cefe43f2bf97bf3b3c659837 | p1@ENST00000522486 |
| 3.14e-16 | FFCP PHASE1:Hg19::chr18:41513341..41513354,-#_5bd60cfcab447aea03320a222c2db284 | p@chr18:41513341..41513354, - |
| 3.14e-16 | FFCP PHASE2:Hg19::chr18:41513341..41513354,-#_5bd60cfcab447aea03320a222c2db284 | p@chr18:41513341..41513354, - |
| 6.02e-16 | FFCP PHASE2:Hg19::chr22:22901442..22901461,-#_c64e7cbf0ff8256c3e13ca473d7b7b5a | p5@PRAME |
| 6.02e-16 | FFCP PHASE1:Hg19::chr22:22901442..22901461,-#_c64e7cbf0ff8256c3e13ca473d7b7b5a | p5@PRAME |
| 1.23e-15 | FFCP PHASE1:Hg19::chr8:114449595..114449607,-#_6fc91ae22e69ca99a1822417d940dc30 | p6@CSMD3 |
| 1.23e-15 | FFCP PHASE2:Hg19::chr7:84644430..84644441,-#_6fc91ae22e69ca99a1822417d940dc30 | p@chr7:84644430..84644441, - |
| 1.23e-15 | FFCP PHASE2:Hg19::chr8:114449595..114449607,-#_6fc91ae22e69ca99a1822417d940dc30 | p6@CSMD3 |
| 1.23e-15 | FFCP PHASE1:Hg19::chr7:84644430..84644441,-#_6fc91ae22e69ca99a1822417d940dc30 | p@chr7:84644430..84644441, - |
| 1.29e-15 | FFCP PHASE1:Hg19::chr11:104125404..104125415,+#_ff7582cc8868b97bacff939b2ea6990b | p@chr11:104125404..104125415, + |
| 1.29e-15 | FFCP PHASE2:Hg19::chr11:104125404..104125415,+#_ff7582cc8868b97bacff939b2ea6990b | p@chr11:104125404..104125415, + |
| 1.29e-15 | FFCP PHASE1:Hg19::chr11:104125387..104125399,+#_ff7582cc8868b97bacff939b2ea6990b | p@chr11:104125387..104125399, + |
| 1.29e-15 | FFCP PHASE2:Hg19::chr11:104125387..104125399,+#_ff7582cc8868b97bacff939b2ea6990b | p@chr11:104125387..104125399, + |
| 1.66e-15 | FFCP PHASE1:Hg19::chr2:131058236..131058275,-#_2ef0932282d6274ce2713142badfd296 | p@chr2:131058236..131058275, - |
| 1.66e-15 | FFCP PHASE2:Hg19::chr2:131058236..131058275,-#_2ef0932282d6274ce2713142badfd296 | p@chr2:131058236..131058275, - |
| 2.41e-14 | FFCP PHASE2:Hg19::chr15:68124344..68124357,+#_153b576b74d0d4a5813a44c4cd9622aa | p@chr15:68124344..68124357, + |
| 2.41e-14 | FFCP PHASE2:Hg19::chr1:172134783..172134793,+#_153b576b74d0d4a5813a44c4cd9622aa | p@chr1:172134783..172134793, + |
| 2.41e-14 | FFCP PHASE1:Hg19::chr1:190678255..190678261,-#_153b576b74d0d4a5813a44c4cd9622aa | p@chr1:190678255..190678261, - |
| 2.41e-14 | FFCP PHASE2:Hg19::chr15:68124362..68124376,+#_153b576b74d0d4a5813a44c4cd9622aa | p@chr15:68124362..68124376, + |
| 2.41e-14 | FFCP PHASE1:Hg19::chr4:134455464..134455466,-#_153b576b74d0d4a5813a44c4cd9622aa | p@chr4:134455464..134455466, - |
| 2.41e-14 | FFCP PHASE1:Hg19::chr10:29115473..29115484,-#_153b576b74d0d4a5813a44c4cd9622aa | p@chr10:29115473..29115484, - |
| 2.41e-14 | FFCP PHASE1:Hg19::chr1:172134783..172134793,+#_153b576b74d0d4a5813a44c4cd9622aa | p@chr1:172134783..172134793, + |
| 2.41e-14 | FFCP PHASE1:Hg19::chr15:68124344..68124357,+#_153b576b74d0d4a5813a44c4cd9622aa | p@chr15:68124344..68124357, + |
| 2.41e-14 | FFCP PHASE2:Hg19::chr4:134455464..134455466,-#_153b576b74d0d4a5813a44c4cd9622aa | p@chr4:134455464..134455466, - |
| 2.41e-14 | FFCP PHASE2:Hg19::chr10:29115473..29115484,-#_153b576b74d0d4a5813a44c4cd9622aa | p@chr10:29115473..29115484, - |
| 2.41e-14 | FFCP PHASE2:Hg19::chr1:190678255..190678261,-#_153b576b74d0d4a5813a44c4cd9622aa | p@chr1:190678255..190678261, - |
| 2.41e-14 | FFCP PHASE1:Hg19::chr10:29115553..29115564,-#_153b576b74d0d4a5813a44c4cd9622aa | p@chr10:29115553..29115564, - |
| 2.41e-14 | FFCP PHASE1:Hg19::chr15:68124362..68124376,+#_153b576b74d0d4a5813a44c4cd9622aa | p@chr15:68124362..68124376, + |
| 2.41e-14 | FFCP PHASE2:Hg19::chr10:29115553..29115564,-#_153b576b74d0d4a5813a44c4cd9622aa | p@chr10:29115553..29115564, - |
| 2.58e-14 | FFCP PHASE1:Hg19::chr1:172147726..172147731,+#_08350276db57b627469af61a9773aea2 | p@chr1:172147726..172147731, + |
| 2.58e-14 | FFCP PHASE1:Hg19::chr22:49819110..49819121,-#_08350276db57b627469af61a9773aea2 | p5@C22orf34 |
| 2.58e-14 | FFCP PHASE2:Hg19::chr18:22254259..22254267,+#_08350276db57b627469af61a9773aea2 | p@chr18:22254259..22254267, + |
| 2.58e-14 | FFCP PHASE2:Hg19::chr22:49819110..49819121,-#_08350276db57b627469af61a9773aea2 | p5@C22orf34 |
| 2.58e-14 | FFCP PHASE1:Hg19::chr12:68696657..68696661,-#_08350276db57b627469af61a9773aea2 | p4@MDM1 |
| 2.58e-14 | FFCP PHASE2:Hg19::chr1:172147726..172147731,+#_08350276db57b627469af61a9773aea2 | p@chr1:172147726..172147731, + |
| 2.58e-14 | FFCP PHASE2:Hg19::chr12:68696657..68696661,-#_08350276db57b627469af61a9773aea2 | p4@MDM1 |
| 2.58e-14 | FFCP PHASE1:Hg19::chr18:22254259..22254267,+#_08350276db57b627469af61a9773aea2 | p@chr18:22254259..22254267, + |
| 2.76e-14 | FFCP PHASE2:Hg19::chr18:44814866..44814869,+#_dbe4b87ac1be6c3ddece0f36215695ba | p@chr18:44814866..44814869, + |
| 2.76e-14 | FFCP PHASE1:Hg19::chr7:15639445..15639451,-#_dbe4b87ac1be6c3ddece0f36215695ba | p@chr7:15639445..15639451, - |
| 2.76e-14 | FFCP PHASE2:Hg19::chr19:48876418..48876427,+#_dbe4b87ac1be6c3ddece0f36215695ba | p@chr19:48876418..48876427, + |
| 2.76e-14 | FFCP PHASE2:Hg19::chr15:68114974..68114985,+#_dbe4b87ac1be6c3ddece0f36215695ba | p@chr15:68114974..68114985, + |
| 2.76e-14 | FFCP PHASE1:Hg19::chr14:32963254..32963261,+#_dbe4b87ac1be6c3ddece0f36215695ba | p19@AKAP6 |
| 2.76e-14 | FFCP PHASE1:Hg19::chr18:22253484..22253496,+#_dbe4b87ac1be6c3ddece0f36215695ba | p@chr18:22253484..22253496, + |
| 2.76e-14 | FFCP PHASE2:Hg19::chr1:188791330..188791337,-#_dbe4b87ac1be6c3ddece0f36215695ba | p@chr1:188791330..188791337, - |
| 2.76e-14 | FFCP PHASE1:Hg19::chr19:48876418..48876427,+#_dbe4b87ac1be6c3ddece0f36215695ba | p@chr19:48876418..48876427, + |
| 2.76e-14 | FFCP PHASE2:Hg19::chr7:15639445..15639451,-#_dbe4b87ac1be6c3ddece0f36215695ba | p@chr7:15639445..15639451, - |
| 2.76e-14 | FFCP PHASE1:Hg19::chr18:44814866..44814869,+#_dbe4b87ac1be6c3ddece0f36215695ba | p@chr18:44814866..44814869, + |
| 2.76e-14 | FFCP PHASE2:Hg19::chr14:32963254..32963261,+#_dbe4b87ac1be6c3ddece0f36215695ba | p19@AKAP6 |
| 2.76e-14 | FFCP PHASE1:Hg19::chr15:68114974..68114985,+#_dbe4b87ac1be6c3ddece0f36215695ba | p@chr15:68114974..68114985, + |
| 2.76e-14 | FFCP PHASE2:Hg19::chr18:22253484..22253496,+#_dbe4b87ac1be6c3ddece0f36215695ba | p@chr18:22253484..22253496, + |
| 2.76e-14 | FFCP PHASE1:Hg19::chr1:188791330..188791337,-#_dbe4b87ac1be6c3ddece0f36215695ba | p@chr1:188791330..188791337, - |
| 7.64e-14 | FFCP PHASE1:Hg19::chr21:19858196..19858204,-#_1df11749aa60773ba1241177fe6deadf | p2@TMPRSS15 |
| 7.64e-14 | FFCP PHASE2:Hg19::chr21:19858196..19858204,-#_1df11749aa60773ba1241177fe6deadf | p2@TMPRSS15 |
| 7.64e-14 | FFCP PHASE2:Hg19::chr13:64652914..64652935,+#_1df11749aa60773ba1241177fe6deadf | p@chr13:64652914..64652935, + |
| 7.64e-14 | FFCP PHASE1:Hg19::chr13:64652914..64652935,+#_1df11749aa60773ba1241177fe6deadf | p@chr13:64652914..64652935, + |
| 1.66e-13 | FFCP PHASE1:Hg19::chr1:197886665..197886732,+#_d75a307280e4b064dc58230cfde72816 | p3@LHX9 |
| 1.66e-13 | FFCP PHASE2:Hg19::chr1:197886665..197886732,+#_d75a307280e4b064dc58230cfde72816 | p3@LHX9 |
| 1.69e-13 | FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_661b75457e8e92745a20dd6d8e2e7804 | p10@ITGA8 |
| 1.69e-13 | FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_661b75457e8e92745a20dd6d8e2e7804 | p10@ITGA8 |
| 1.84e-13 | FFCP PHASE2:Hg19::chr1:10434688..10434703,+#_a5459df4bbee19c92b6bba65fad30393 | p@chr1:10434688..10434703, + |
| 1.84e-13 | FFCP PHASE1:Hg19::chr1:10434688..10434703,+#_a5459df4bbee19c92b6bba65fad30393 | p@chr1:10434688..10434703, + |
| 1.92e-13 | FFCP PHASE1:Hg19::chr5:135378786..135378804,+#_75b46acb1807d99c51e7956a06272c3c | p@chr5:135378786..135378804, + |
| 1.92e-13 | FFCP PHASE1:Hg19::chr7:84139434..84139439,+#_75b46acb1807d99c51e7956a06272c3c | p@chr7:84139434..84139439, + |
| 1.92e-13 | FFCP PHASE2:Hg19::chr5:135378786..135378804,+#_75b46acb1807d99c51e7956a06272c3c | p@chr5:135378786..135378804, + |
| 1.92e-13 | FFCP PHASE2:Hg19::chr7:84139434..84139439,+#_75b46acb1807d99c51e7956a06272c3c | p@chr7:84139434..84139439, + |
| 1.36e-12 | FFCP PHASE1:Hg19::chr15:68115921..68115938,+#_9ec92dfa046adb1a7322af1ddeddaaf0 | p2@SKOR1 |
| 1.36e-12 | FFCP PHASE2:Hg19::chr15:68115921..68115938,+#_9ec92dfa046adb1a7322af1ddeddaaf0 | p2@SKOR1 |
| 1.49e-12 | FFCP PHASE2:Hg19::chrX:151307006..151307013,-#_ec5f991793093567917d789df67a8ef9 | p2@MAGEA10 |
| 1.49e-12 | FFCP PHASE1:Hg19::chrX:151307006..151307013,-#_ec5f991793093567917d789df67a8ef9 | p2@MAGEA10 |
