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DOID:5861: Difference between revisions

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|located_in=
|located_in=
|name=myxoid chondrosarcoma
|name=myxoid chondrosarcoma
|namespace=disease_ontology
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 16:52, 12 September 2014

Name:myxoid chondrosarcoma
Namespace:FANTOM
Xrefs:
links:

NCI:C4303
SNOMEDCT_2010_1_31:189881008
SNOMEDCT_2010_1_31:75622000

UMLS_CUI:C0334551
Synonyms: " Myxoid chondrosarcoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189881008]
"Myxoid chondrosarcoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:75622000]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:3371(chondrosarcoma)



Children


is a:DOID:6496 (extraskeletal myxoid chondrosarcoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

  • 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)

Mouse (Mus musculus)

  • 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:5861 (myxoid chondrosarcoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr4:169935453..169935460,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr4:169935453..169935460, -
5.42e-195FFCP PHASE1:Hg19::chr3:2140234..2140235,+#_6ef67aad4781bdf0faef4ef7a3601b2fp36@CNTN4
5.42e-195FFCP PHASE1:Hg19::chr1:228806586..228806591,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr1:228806586..228806591, +
5.42e-195FFCP PHASE1:Hg19::chr3:2141851..2141858,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr3:2141851..2141858, -
5.42e-195FFCP PHASE2:Hg19::chrX:591202..591211,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chrX:591202..591211, -
5.42e-195FFCP PHASE2:Hg19::chr10:33244302..33244305,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr10:33244302..33244305, -
5.42e-195FFCP PHASE1:Hg19::chr6:152589345..152589353,-#_6ef67aad4781bdf0faef4ef7a3601b2fp63@SYNE1
5.42e-195FFCP PHASE1:Hg19::chr10:63700076..63700086,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr10:63700076..63700086, +
5.42e-195FFCP PHASE2:Hg19::chr12:80818234..80818245,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr12:80818234..80818245, +
5.42e-195FFCP PHASE2:Hg19::chr1:198595872..198595878,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr1:198595872..198595878, +
5.42e-195FFCP PHASE1:Hg19::chr3:157230582..157230593,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr3:157230582..157230593, +
5.42e-195FFCP PHASE1:Hg19::chr1:192407901..192407907,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr1:192407901..192407907, -
5.42e-195FFCP PHASE1:Hg19::chr19:41281630..41281644,+#_6ef67aad4781bdf0faef4ef7a3601b2fp6@RAB4B
5.42e-195FFCP PHASE2:Hg19::chr5:128083931..128083952,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr5:128083931..128083952, +
5.42e-195FFCP PHASE2:Hg19::chr1:158989981..158989988,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr1:158989981..158989988, +
5.42e-195FFCP PHASE2:Hg19::chr12:71031310..71031321,-#_6ef67aad4781bdf0faef4ef7a3601b2fp14@PTPRB
5.42e-195FFCP PHASE1:Hg19::chr4:72897846..72897853,+#_6ef67aad4781bdf0faef4ef7a3601b2fp7@NPFFR2
5.42e-195FFCP PHASE1:Hg19::chr14:83319766..83319776,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr14:83319766..83319776, -
5.42e-195FFCP PHASE2:Hg19::chr19:56047669..56047674,-#_6ef67aad4781bdf0faef4ef7a3601b2fp7@SBK2
5.42e-195FFCP PHASE2:Hg19::chr3:2141949..2141956,+#_6ef67aad4781bdf0faef4ef7a3601b2fp21@CNTN4
5.42e-195FFCP PHASE1:Hg19::chr2:188420470..188420480,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr2:188420470..188420480, +
5.42e-195FFCP PHASE2:Hg19::chr6:152589452..152589462,-#_6ef67aad4781bdf0faef4ef7a3601b2fp43@SYNE1
5.42e-195FFCP PHASE1:Hg19::chr4:145124273..145124279,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr4:145124273..145124279, +
5.42e-195FFCP PHASE1:Hg19::chr12:71031310..71031321,-#_6ef67aad4781bdf0faef4ef7a3601b2fp14@PTPRB
5.42e-195FFCP PHASE1:Hg19::chr18:22251696..22251702,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr18:22251696..22251702, -
5.42e-195FFCP PHASE2:Hg19::chr8:107074457..107074458,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr8:107074457..107074458, +
5.42e-195FFCP PHASE2:Hg19::chr3:1577586..1577600,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr3:1577586..1577600, -
5.42e-195FFCP PHASE1:Hg19::chr18:74961699..74961708,+#_6ef67aad4781bdf0faef4ef7a3601b2fp5@GALR1
5.42e-195FFCP PHASE2:Hg19::chr21:17357327..17357329,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr21:17357327..17357329, -
5.42e-195FFCP PHASE1:Hg19::chr6:152792957..152792960,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr6:152792957..152792960, -
5.42e-195FFCP PHASE1:Hg19::chr9:12848028..12848033,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr9:12848028..12848033, -
5.42e-195FFCP PHASE1:Hg19::chr3:177555440..177555446,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr3:177555440..177555446, -
5.42e-195FFCP PHASE1:Hg19::chr1:197886803..197886812,+#_6ef67aad4781bdf0faef4ef7a3601b2fp7@LHX9
5.42e-195FFCP PHASE1:Hg19::chr19:56047661..56047668,-#_6ef67aad4781bdf0faef4ef7a3601b2fp4@SBK2
5.42e-195FFCP PHASE2:Hg19::chr4:139817600..139817609,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr4:139817600..139817609, -
5.42e-195FFCP PHASE1:Hg19::chr3:2141993..2142006,+#_6ef67aad4781bdf0faef4ef7a3601b2fp6@CNTN4
5.42e-195FFCP PHASE1:Hg19::chr12:89917192..89917200,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr12:89917192..89917200, -
5.42e-195FFCP PHASE1:Hg19::chr1:154942376..154942386,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr1:154942376..154942386, -
5.42e-195FFCP PHASE2:Hg19::chr14:88322648..88322655,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr14:88322648..88322655, -
5.42e-195FFCP PHASE1:Hg19::chr6:152590052..152590068,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr6:152590052..152590068, -
5.42e-195FFCP PHASE1:Hg19::chr2:175614951..175614956,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr2:175614951..175614956, -
5.42e-195FFCP PHASE2:Hg19::chr6:150735319..150735330,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr6:150735319..150735330, +
5.42e-195FFCP PHASE1:Hg19::chr3:1577559..1577577,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr3:1577559..1577577, -
5.42e-195FFCP PHASE2:Hg19::chr3:30570717..30570723,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr3:30570717..30570723, -
5.42e-195FFCP PHASE2:Hg19::chr11:30252646..30252648,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr11:30252646..30252648, +
5.42e-195FFCP PHASE1:Hg19::chr2:206927691..206927699,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr2:206927691..206927699, -
5.42e-195FFCP PHASE1:Hg19::chr3:2139856..2139863,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr3:2139856..2139863, +
5.42e-195FFCP PHASE2:Hg19::chr12:79920639..79920642,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr12:79920639..79920642, -
5.42e-195FFCP PHASE1:Hg19::chr3:2141775..2141783,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr3:2141775..2141783, -
5.42e-195FFCP PHASE1:Hg19::chr6:152589245..152589256,-#_6ef67aad4781bdf0faef4ef7a3601b2fp53@SYNE1
5.42e-195FFCP PHASE1:Hg19::chr14:87689429..87689432,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr14:87689429..87689432, -
5.42e-195FFCP PHASE2:Hg19::chr7:18439510..18439521,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr7:18439510..18439521, +
5.42e-195FFCP PHASE1:Hg19::chr5:33361438..33361453,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr5:33361438..33361453, -
5.42e-195FFCP PHASE1:Hg19::chr2:190023542..190023552,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr2:190023542..190023552, -
5.42e-195FFCP PHASE1:Hg19::chr15:96181433..96181441,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr15:96181433..96181441, -
5.42e-195FFCP PHASE1:Hg19::chr11:30257128..30257133,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr11:30257128..30257133, -
5.42e-195FFCP PHASE2:Hg19::chr6:152592460..152592465,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr6:152592460..152592465, -
5.42e-195FFCP PHASE1:Hg19::chr12:79920639..79920642,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr12:79920639..79920642, -
5.42e-195FFCP PHASE1:Hg19::chr12:108955070..108955084,-#_6ef67aad4781bdf0faef4ef7a3601b2fp16@SART3
5.42e-195FFCP PHASE1:Hg19::chr6:150740842..150740854,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr6:150740842..150740854, +
5.42e-195FFCP PHASE1:Hg19::chr10:33244066..33244083,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr10:33244066..33244083, -
5.42e-195FFCP PHASE2:Hg19::chr12:46884845..46884851,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr12:46884845..46884851, +
5.42e-195FFCP PHASE2:Hg19::chr2:27806224..27806236,+#_6ef67aad4781bdf0faef4ef7a3601b2fp5@ZNF512
5.42e-195FFCP PHASE2:Hg19::chr6:152589315..152589320,-#_6ef67aad4781bdf0faef4ef7a3601b2fp72@SYNE1
5.42e-195FFCP PHASE2:Hg19::chr3:2141813..2141822,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr3:2141813..2141822, -
5.42e-195FFCP PHASE2:Hg19::chr12:70351971..70351975,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr12:70351971..70351975, +
5.42e-195FFCP PHASE1:Hg19::chr1:197890538..197890548,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr1:197890538..197890548, +
5.42e-195FFCP PHASE2:Hg19::chr16:52581957..52581960,-#_6ef67aad4781bdf0faef4ef7a3601b2fp8@TOX3
5.42e-195FFCP PHASE1:Hg19::chr6:142987388..142987398,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr6:142987388..142987398, -
5.42e-195FFCP PHASE2:Hg19::chr1:192408018..192408032,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr1:192408018..192408032, -
5.42e-195FFCP PHASE2:Hg19::chr10:63700043..63700053,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr10:63700043..63700053, +
5.42e-195FFCP PHASE1:Hg19::chrX:135338397..135338402,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chrX:135338397..135338402, -
5.42e-195FFCP PHASE2:Hg19::chr9:79634044..79634053,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr9:79634044..79634053, -
5.42e-195FFCP PHASE2:Hg19::chr1:145473286..145473295,+#_6ef67aad4781bdf0faef4ef7a3601b2fp5@AB464458
5.42e-195FFCP PHASE1:Hg19::chr3:163194047..163194081,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr3:163194047..163194081, -
5.42e-195FFCP PHASE1:Hg19::chr12:70351971..70351975,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr12:70351971..70351975, +
5.42e-195FFCP PHASE1:Hg19::chr4:169935479..169935481,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr4:169935479..169935481, -
5.42e-195FFCP PHASE1:Hg19::chr3:2141862..2141887,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr3:2141862..2141887, -
5.42e-195FFCP PHASE1:Hg19::chr12:46660412..46660420,-#_6ef67aad4781bdf0faef4ef7a3601b2fp38@SLC38A1
5.42e-195FFCP PHASE2:Hg19::chr14:88220703..88220709,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr14:88220703..88220709, -
5.42e-195FFCP PHASE2:Hg19::chr10:33244345..33244348,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr10:33244345..33244348, -
5.42e-195FFCP PHASE1:Hg19::chr16:52581957..52581960,-#_6ef67aad4781bdf0faef4ef7a3601b2fp8@TOX3
5.42e-195FFCP PHASE2:Hg19::chr12:80818259..80818266,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr12:80818259..80818266, +
5.42e-195FFCP PHASE2:Hg19::chr1:198595896..198595910,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr1:198595896..198595910, +
5.42e-195FFCP PHASE2:Hg19::chr1:112916133..112916138,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr1:112916133..112916138, -
5.42e-195FFCP PHASE2:Hg19::chr13:23368370..23368374,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr13:23368370..23368374, +
5.42e-195FFCP PHASE1:Hg19::chr3:99680705..99680734,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr3:99680705..99680734, +
5.42e-195FFCP PHASE1:Hg19::chr3:157230599..157230604,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr3:157230599..157230604, +
5.42e-195FFCP PHASE2:Hg19::chr11:30105969..30105977,-#_6ef67aad4781bdf0faef4ef7a3601b2fp1@ENST00000527819
5.42e-195FFCP PHASE2:Hg19::chr12:71031325..71031332,-#_6ef67aad4781bdf0faef4ef7a3601b2fp19@PTPRB
5.42e-195FFCP PHASE1:Hg19::chr12:80818234..80818245,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr12:80818234..80818245, +
5.42e-195FFCP PHASE2:Hg19::chr20:36848135..36848142,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr20:36848135..36848142, -
5.42e-195FFCP PHASE2:Hg19::chr9:18993581..18993586,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr9:18993581..18993586, -
5.42e-195FFCP PHASE2:Hg19::chr3:2141982..2141990,+#_6ef67aad4781bdf0faef4ef7a3601b2fp16@CNTN4
5.42e-195FFCP PHASE2:Hg19::chr15:95751475..95751482,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr15:95751475..95751482, +
5.42e-195FFCP PHASE2:Hg19::chr1:154942206..154942211,-#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr1:154942206..154942211, -
5.42e-195FFCP PHASE2:Hg19::chr12:70636933..70636940,+#_6ef67aad4781bdf0faef4ef7a3601b2fp28@CNOT2
5.42e-195FFCP PHASE1:Hg19::chr7:94540075..94540082,+#_6ef67aad4781bdf0faef4ef7a3601b2fp21@PPP1R9A
5.42e-195FFCP PHASE1:Hg19::chr1:198595872..198595878,+#_6ef67aad4781bdf0faef4ef7a3601b2fp@chr1:198595872..198595878, +
5.42e-195FFCP PHASE1:Hg19::chr12:71031325..71031332,-#_6ef67aad4781bdf0faef4ef7a3601b2fp19@PTPRB

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