UBERON:0004128: Difference between revisions
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|located_in= | |located_in= | ||
|name=optic vesicle | |name=optic vesicle | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0010312 | |part_of=UBERON:0010312 | ||
Latest revision as of 17:43, 12 September 2014
| Name: | optic vesicle | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup[GO]. Portion of tissue that is comprised of neuroepitheium which has pinched off from the anterior neural keel and will form the optic cup[ZFA]." [GO:0003404, Wikipedia:Optic_vesicles] | ||
| Xrefs: |
| ||
| Synonyms: | "evagination" RELATED [] | ||
| Comments: | Genes: Six3, Pax6, Rx1 are expressed together in the tip of the neural plate [ISBN:9780878932504 "Developmental Biology"]. Development notes: During subsequent develop- ment, the optic vesicle invaginates and becomes a two-layered structure with an inner neural retina and outer retinal pigment epithelium. As soon as the developing optic vesicle makes contact with the overlying ectoderm, it induces the ectoderm to thicken and form the lens placode PMID:16496288 | ||
| Subset: | vertebrate_core |
200px-Gray863.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0002346(neurectoderm),UBERON:0003071(eye primordium) |
| part_of: | UBERON:0010312(immature eye) |
Children
| develops from: | UBERON:0001769 (iris),UBERON:0003072 (optic cup) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004128 (optic vesicle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.31e-86 | FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_081e6863227a6e39750b1a0122c57c6f | p1@Mir184 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_081e6863227a6e39750b1a0122c57c6f | p@chr11:77532283..77532316, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_081e6863227a6e39750b1a0122c57c6f | p4@Dct |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_081e6863227a6e39750b1a0122c57c6f | p@chr17:31817987..31818013, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_081e6863227a6e39750b1a0122c57c6f | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_081e6863227a6e39750b1a0122c57c6f | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_081e6863227a6e39750b1a0122c57c6f | p4@Dct |
| 1.31e-86 | FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_081e6863227a6e39750b1a0122c57c6f | p6@Celf1 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_081e6863227a6e39750b1a0122c57c6f | p@chr17:31818263..31818276, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_081e6863227a6e39750b1a0122c57c6f | p@chr3:129525389..129525400, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_081e6863227a6e39750b1a0122c57c6f | p1@Mir184 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_081e6863227a6e39750b1a0122c57c6f | p@chr17:31818263..31818276, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_081e6863227a6e39750b1a0122c57c6f | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_081e6863227a6e39750b1a0122c57c6f | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_081e6863227a6e39750b1a0122c57c6f | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_081e6863227a6e39750b1a0122c57c6f | p6@Celf1 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_081e6863227a6e39750b1a0122c57c6f | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_081e6863227a6e39750b1a0122c57c6f | p@chr11:77532283..77532316, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_081e6863227a6e39750b1a0122c57c6f | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_081e6863227a6e39750b1a0122c57c6f | p@chr17:31815126..31815139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_081e6863227a6e39750b1a0122c57c6f | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_081e6863227a6e39750b1a0122c57c6f | p8@Osbp2 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_081e6863227a6e39750b1a0122c57c6f | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_081e6863227a6e39750b1a0122c57c6f | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_081e6863227a6e39750b1a0122c57c6f | p@chr3:129525389..129525400, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_081e6863227a6e39750b1a0122c57c6f | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_081e6863227a6e39750b1a0122c57c6f | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_081e6863227a6e39750b1a0122c57c6f | p8@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_081e6863227a6e39750b1a0122c57c6f | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_081e6863227a6e39750b1a0122c57c6f | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_081e6863227a6e39750b1a0122c57c6f | p@chr17:31815126..31815139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_081e6863227a6e39750b1a0122c57c6f | p@chr17:31817987..31818013, + |
| 2.3e-78 | FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_6b5b733c81d23353b222115c18812150 | p3@LOC100504989, p3@Timeless |
| 2.3e-78 | FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_6b5b733c81d23353b222115c18812150 | p@chr7:64675015..64675028, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_6b5b733c81d23353b222115c18812150 | p3@LOC100504989, p3@Timeless |
| 2.3e-78 | FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_6b5b733c81d23353b222115c18812150 | p@chr7:64675015..64675028, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_1d3f4e8da18b9890b27d634a2a7aa446 | p6@Pax6 |
| 2.82e-78 | FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_1d3f4e8da18b9890b27d634a2a7aa446 | p6@Pax6 |
| 2.82e-78 | FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_1d3f4e8da18b9890b27d634a2a7aa446 | p@chr6:97891135..97891147, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_1d3f4e8da18b9890b27d634a2a7aa446 | p@chr6:97891135..97891147, + |
| 3.46e-78 | FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_853aae653feee41b5307b0b9aeb8a1ac | p1@4933429O19Rik |
| 3.46e-78 | FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_853aae653feee41b5307b0b9aeb8a1ac | p1@4933429O19Rik |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65147224..65147236,-#_86194975a725ddb50b763593c96cbad4 | p@chr1:65147224..65147236, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113507470..113507483,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:113507470..113507483, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112688342..112688357,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112688342..112688357, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr14:52730585..52730607,+#_86194975a725ddb50b763593c96cbad4 | p1@Rpgrip1 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:127668799..127668810,+#_86194975a725ddb50b763593c96cbad4 | p5@LOC100504989, p5@Timeless |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113506190..113506202,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:113506190..113506202, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65149656..65149674,-#_86194975a725ddb50b763593c96cbad4 | p2@Cryga |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:38092602..38092616,+#_86194975a725ddb50b763593c96cbad4 | p@chr1:38092602..38092616, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112690963..112690994, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:129525435..129525448,-#_86194975a725ddb50b763593c96cbad4 | p2@Rrh |
| 4.97e-77 | FFCP PHASE2:Mm9::chr8:77582172..77582183,+#_86194975a725ddb50b763593c96cbad4 | p@chr8:77582172..77582183, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr7:28282354..28282365,+#_86194975a725ddb50b763593c96cbad4 | p@chr7:28282354..28282365, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112686483..112686494,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112686483..112686494, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112686483..112686494,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112686483..112686494, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113507470..113507483,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:113507470..113507483, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112692580..112692595,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112692580..112692595, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112696408..112696421,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:112696408..112696421, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31816514..31816526,+#_86194975a725ddb50b763593c96cbad4 | p@chr17:31816514..31816526, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:127668686..127668697,+#_86194975a725ddb50b763593c96cbad4 | p4@LOC100504989, p4@Timeless |
| 4.97e-77 | FFCP PHASE1:Mm9::chr14:35413322..35413333,-#_86194975a725ddb50b763593c96cbad4 | p1@Opn4 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr16:56204438..56204451,+#_86194975a725ddb50b763593c96cbad4 | p1@Impg2 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65146997..65147021,-#_86194975a725ddb50b763593c96cbad4 | p@chr1:65146997..65147021, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113504891..113504916,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:113504891..113504916, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112675556..112675574,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:112675556..112675574, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:34488839..34488876,+#_86194975a725ddb50b763593c96cbad4 | p1@ENSMUST00000173365 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:38092538..38092550,+#_86194975a725ddb50b763593c96cbad4 | p@chr1:38092538..38092550, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr6:85969237..85969247,+#_86194975a725ddb50b763593c96cbad4 | p@chr6:85969237..85969247, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr11:77532270..77532280,-#_86194975a725ddb50b763593c96cbad4 | p@chr11:77532270..77532280, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr7:28282354..28282365,+#_86194975a725ddb50b763593c96cbad4 | p@chr7:28282354..28282365, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr8:77582172..77582183,+#_86194975a725ddb50b763593c96cbad4 | p@chr8:77582172..77582183, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112691047..112691066,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112691047..112691066, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31816584..31816600,+#_86194975a725ddb50b763593c96cbad4 | p@chr17:31816584..31816600, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113504891..113504916,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:113504891..113504916, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:129525452..129525463,-#_86194975a725ddb50b763593c96cbad4 | p3@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690729..112690741,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112690729..112690741, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113506190..113506202,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:113506190..113506202, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:127668480..127668491,+#_86194975a725ddb50b763593c96cbad4 | p@chr10:127668480..127668491, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65147201..65147212,-#_86194975a725ddb50b763593c96cbad4 | p@chr1:65147201..65147212, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_86194975a725ddb50b763593c96cbad4 | p@chr6:115162924..115162933, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr6:85969237..85969247,+#_86194975a725ddb50b763593c96cbad4 | p@chr6:85969237..85969247, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_86194975a725ddb50b763593c96cbad4 | p@chr1:38092538..38092550, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr15:36655026..36655032,+#_86194975a725ddb50b763593c96cbad4 | p@chr15:36655026..36655032, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:127668799..127668810,+#_86194975a725ddb50b763593c96cbad4 | p5@LOC100504989, p5@Timeless |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31816514..31816526,+#_86194975a725ddb50b763593c96cbad4 | p@chr17:31816514..31816526, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690636..112690656,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112690636..112690656, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr4:19208009..19208054,+#_86194975a725ddb50b763593c96cbad4 | p1@Cngb3 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112681470..112681483,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:112681470..112681483, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112681470..112681483,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:112681470..112681483, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112698505..112698537,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:112698505..112698537, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:129525405..129525428,-#_86194975a725ddb50b763593c96cbad4 | p1@Rrh |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112691047..112691066,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112691047..112691066, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr8:77582194..77582219,+#_86194975a725ddb50b763593c96cbad4 | p@chr8:77582194..77582219, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_86194975a725ddb50b763593c96cbad4 | p1@Gm4792 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr2:93906955..93906973,-#_86194975a725ddb50b763593c96cbad4 | p2@Hsd17b12 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690729..112690741,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112690729..112690741, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690744..112690755,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112690744..112690755, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr8:77582194..77582219,+#_86194975a725ddb50b763593c96cbad4 | p@chr8:77582194..77582219, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31818629..31818644,+#_86194975a725ddb50b763593c96cbad4 | p@chr17:31818629..31818644, + |
