UBERON:0005403: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=ventral striatum | |name=ventral striatum | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002435 | |part_of=UBERON:0002435 | ||
Latest revision as of 17:53, 12 September 2014
| Name: | ventral striatum | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Alt_id: | UBERON:MA_0002972-FMA_77614 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0011300(gray matter of telencephalon) |
|---|---|
| part_of: | UBERON:0002435(striatum) |
Children
| part of: | UBERON:0001882 (nucleus accumbens) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10037-101F1 (nucleus accumbens, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005403 (ventral striatum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr9:19788870..19788880,+#_91369212e5add2550cc776705f41bdc8 | p@chr9:19788870..19788880, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr9:5304713..5304719,-#_91369212e5add2550cc776705f41bdc8 | p1@RLN2 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr9:19788870..19788880,+#_91369212e5add2550cc776705f41bdc8 | p@chr9:19788870..19788880, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr9:5304713..5304719,-#_91369212e5add2550cc776705f41bdc8 | p1@RLN2 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:18765490..18765499,-#_a69ecd7df71050bfa471d5bfad1b14e6 | p16@PTPN5 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr16:28075097..28075108,-#_a69ecd7df71050bfa471d5bfad1b14e6 | p7@GSG1L |
| 2.55e-98 | FFCP PHASE2:Hg19::chr16:28075097..28075108,-#_a69ecd7df71050bfa471d5bfad1b14e6 | p7@GSG1L |
| 2.55e-98 | FFCP PHASE1:Hg19::chr11:18765490..18765499,-#_a69ecd7df71050bfa471d5bfad1b14e6 | p16@PTPN5 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:63542313..63542321,+#_249bccfbc53079c5ce60c175c3002817 | p@chr3:63542313..63542321, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:229478819..229478822,-#_249bccfbc53079c5ce60c175c3002817 | p8@C1orf96 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr12:54943367..54943368,+#_249bccfbc53079c5ce60c175c3002817 | p9@PDE1B |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:63542313..63542321,+#_249bccfbc53079c5ce60c175c3002817 | p@chr3:63542313..63542321, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr18:11752139..11752148,+#_249bccfbc53079c5ce60c175c3002817 | p27@GNAL |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:229478819..229478822,-#_249bccfbc53079c5ce60c175c3002817 | p8@C1orf96 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr18:11752139..11752148,+#_249bccfbc53079c5ce60c175c3002817 | p27@GNAL |
| 2.39e-66 | FFCP PHASE2:Hg19::chr12:54943367..54943368,+#_249bccfbc53079c5ce60c175c3002817 | p9@PDE1B |
| 4.66e-66 | FFCP PHASE1:Hg19::chr13:42614200..42614212,+#_f21eb53d8eeab721b4964f38a419925a | p2@DGKH |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:35195732..35195740,-#_f21eb53d8eeab721b4964f38a419925a | p22@PRLR |
| 4.66e-66 | FFCP PHASE2:Hg19::chr1:228399053..228399061,-#_f21eb53d8eeab721b4964f38a419925a | p@chr1:228399053..228399061, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr15:37777334..37777345,-#_f21eb53d8eeab721b4964f38a419925a | p@chr15:37777334..37777345, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chrX:102663083..102663098,+#_f21eb53d8eeab721b4964f38a419925a | p@chrX:102663083..102663098, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:35195732..35195740,-#_f21eb53d8eeab721b4964f38a419925a | p22@PRLR |
| 4.66e-66 | FFCP PHASE2:Hg19::chr13:42614200..42614212,+#_f21eb53d8eeab721b4964f38a419925a | p2@DGKH |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:71945904..71945922,+#_f21eb53d8eeab721b4964f38a419925a | p@chr4:71945904..71945922, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr11:47617035..47617045,-#_f21eb53d8eeab721b4964f38a419925a | p@chr11:47617035..47617045, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr8:115354253..115354290,+#_f21eb53d8eeab721b4964f38a419925a | p@chr8:115354253..115354290, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chrX:102663083..102663098,+#_f21eb53d8eeab721b4964f38a419925a | p@chrX:102663083..102663098, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr11:47617035..47617045,-#_f21eb53d8eeab721b4964f38a419925a | p@chr11:47617035..47617045, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr12:51984146..51984157,+#_f21eb53d8eeab721b4964f38a419925a | p11@SCN8A |
| 4.66e-66 | FFCP PHASE1:Hg19::chr1:228399053..228399061,-#_f21eb53d8eeab721b4964f38a419925a | p@chr1:228399053..228399061, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:71945904..71945922,+#_f21eb53d8eeab721b4964f38a419925a | p@chr4:71945904..71945922, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr8:115354253..115354290,+#_f21eb53d8eeab721b4964f38a419925a | p@chr8:115354253..115354290, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr12:51984146..51984157,+#_f21eb53d8eeab721b4964f38a419925a | p11@SCN8A |
| 4.66e-66 | FFCP PHASE1:Hg19::chr15:37777334..37777345,-#_f21eb53d8eeab721b4964f38a419925a | p@chr15:37777334..37777345, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr11:63258167..63258182,-#_3f6e8130b15d8218f1c1f845296136f2 | p8@HRASLS5 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr11:63258167..63258182,-#_3f6e8130b15d8218f1c1f845296136f2 | p8@HRASLS5 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr4:8073763..8073768,-#_3f6e8130b15d8218f1c1f845296136f2 | p11@ABLIM2 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr4:8073763..8073768,-#_3f6e8130b15d8218f1c1f845296136f2 | p11@ABLIM2 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr7:4998664..4998674,-#_1943f767230e171ce2b185ebe8c42e63 | p2@MMD2 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr7:111424008..111424024,-#_1943f767230e171ce2b185ebe8c42e63 | p@chr7:111424008..111424024, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr7:22382780..22382797,-#_1943f767230e171ce2b185ebe8c42e63 | p@chr7:22382780..22382797, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_1943f767230e171ce2b185ebe8c42e63 | p@chr14:78638610..78638621, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:47616996..47617008,-#_1943f767230e171ce2b185ebe8c42e63 | p@chr11:47616996..47617008, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr7:22382758..22382765,-#_1943f767230e171ce2b185ebe8c42e63 | p@chr7:22382758..22382765, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:47616996..47617008,-#_1943f767230e171ce2b185ebe8c42e63 | p@chr11:47616996..47617008, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr7:111424008..111424024,-#_1943f767230e171ce2b185ebe8c42e63 | p@chr7:111424008..111424024, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr15:35546154..35546174,-#_1943f767230e171ce2b185ebe8c42e63 | p@chr15:35546154..35546174, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr7:22382780..22382797,-#_1943f767230e171ce2b185ebe8c42e63 | p@chr7:22382780..22382797, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr19:57269846..57269858,-#_1943f767230e171ce2b185ebe8c42e63 | p@chr19:57269846..57269858, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr2:173600459..173600464,+#_1943f767230e171ce2b185ebe8c42e63 | p21@RAPGEF4 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr16:645297..645302,+#_1943f767230e171ce2b185ebe8c42e63 | p@chr16:645297..645302, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr7:4998664..4998674,-#_1943f767230e171ce2b185ebe8c42e63 | p2@MMD2 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr15:35546154..35546174,-#_1943f767230e171ce2b185ebe8c42e63 | p@chr15:35546154..35546174, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr16:645297..645302,+#_1943f767230e171ce2b185ebe8c42e63 | p@chr16:645297..645302, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_1943f767230e171ce2b185ebe8c42e63 | p@chr14:78638610..78638621, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr7:22382758..22382765,-#_1943f767230e171ce2b185ebe8c42e63 | p@chr7:22382758..22382765, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr2:173600459..173600464,+#_1943f767230e171ce2b185ebe8c42e63 | p21@RAPGEF4 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr19:57269846..57269858,-#_1943f767230e171ce2b185ebe8c42e63 | p@chr19:57269846..57269858, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr14:71905629..71905640,+#_49662ec856358f45c161b41482c37e0d | p@chr14:71905629..71905640, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr12:49375345..49375356,-#_49662ec856358f45c161b41482c37e0d | p@chr12:49375345..49375356, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr21:45788960..45788972,+#_49662ec856358f45c161b41482c37e0d | p12@TRPM2 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_49662ec856358f45c161b41482c37e0d | p@chr2:152828264..152828299, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr7:29846088..29846091,+#_49662ec856358f45c161b41482c37e0d | p20@WIPF3 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_49662ec856358f45c161b41482c37e0d | p@chr1:31352916..31352926, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_49662ec856358f45c161b41482c37e0d | p@chr12:6031299..6031315, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr8:75564025..75564036,+#_49662ec856358f45c161b41482c37e0d | p@chr8:75564025..75564036, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr14:71905629..71905640,+#_49662ec856358f45c161b41482c37e0d | p@chr14:71905629..71905640, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chrX:132091252..132091261,-#_49662ec856358f45c161b41482c37e0d | p17@HS6ST2 |
| 6.58e-50 | FFCP PHASE1:Hg19::chrX:85969610..85969619,+#_49662ec856358f45c161b41482c37e0d | p4@DACH2 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr12:49375345..49375356,-#_49662ec856358f45c161b41482c37e0d | p@chr12:49375345..49375356, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_49662ec856358f45c161b41482c37e0d | p@chr12:6031299..6031315, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_49662ec856358f45c161b41482c37e0d | p@chr13:112726433..112726446, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr7:29846088..29846091,+#_49662ec856358f45c161b41482c37e0d | p20@WIPF3 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_49662ec856358f45c161b41482c37e0d | p@chr1:31352916..31352926, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_49662ec856358f45c161b41482c37e0d | p@chr18:47967428..47967437, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr21:45788960..45788972,+#_49662ec856358f45c161b41482c37e0d | p12@TRPM2 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_49662ec856358f45c161b41482c37e0d | p@chr2:152828264..152828299, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chrX:132091252..132091261,-#_49662ec856358f45c161b41482c37e0d | p17@HS6ST2 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_49662ec856358f45c161b41482c37e0d | p@chr18:47967428..47967437, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chrX:85969610..85969619,+#_49662ec856358f45c161b41482c37e0d | p4@DACH2 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_49662ec856358f45c161b41482c37e0d | p@chr13:112726433..112726446, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr8:75564025..75564036,+#_49662ec856358f45c161b41482c37e0d | p@chr8:75564025..75564036, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr11:130011708..130011717,+#_4ba5e613fed43764a900d33f7fded995 | p18@APLP2 |
| 6.62e-41 | FFCP PHASE1:Hg19::chr11:130011708..130011717,+#_4ba5e613fed43764a900d33f7fded995 | p18@APLP2 |
| 9.91e-41 | FFCP PHASE2:Hg19::chr1:35198521..35198523,-#_08bd62954f45aef4fcf088b309c702bb | p@chr1:35198521..35198523, - |
| 9.91e-41 | FFCP PHASE1:Hg19::chr12:11652913..11652927,+#_08bd62954f45aef4fcf088b309c702bb | p@chr12:11652913..11652927, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_08bd62954f45aef4fcf088b309c702bb | p23@KCNAB1 |
| 9.91e-41 | FFCP PHASE1:Hg19::chr1:35198521..35198523,-#_08bd62954f45aef4fcf088b309c702bb | p@chr1:35198521..35198523, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr12:11652913..11652927,+#_08bd62954f45aef4fcf088b309c702bb | p@chr12:11652913..11652927, + |
| 9.91e-41 | FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_08bd62954f45aef4fcf088b309c702bb | p23@KCNAB1 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr6:19877308..19877326,-#_71f5b0e38f6886b4e0d690b2c81d45a7 | p@chr6:19877308..19877326, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_71f5b0e38f6886b4e0d690b2c81d45a7 | p@chr20:9496091..9496106, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr10:97261874..97261887,-#_71f5b0e38f6886b4e0d690b2c81d45a7 | p@chr10:97261874..97261887, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr2:127783377..127783391,+#_71f5b0e38f6886b4e0d690b2c81d45a7 | p2@BC051739 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_71f5b0e38f6886b4e0d690b2c81d45a7 | p@chr3:57807798..57807809, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr6:19877308..19877326,-#_71f5b0e38f6886b4e0d690b2c81d45a7 | p@chr6:19877308..19877326, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr7:143582357..143582366,-#_71f5b0e38f6886b4e0d690b2c81d45a7 | p9@FAM115A |
| 1.48e-40 | FFCP PHASE1:Hg19::chr6:145132414..145132428,+#_71f5b0e38f6886b4e0d690b2c81d45a7 | p@chr6:145132414..145132428, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_71f5b0e38f6886b4e0d690b2c81d45a7 | p@chr3:57807798..57807809, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_71f5b0e38f6886b4e0d690b2c81d45a7 | p@chr20:9496091..9496106, + |
