UBERON:0010323: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=cranial skeletal system | |name=cranial skeletal system | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0011137 | |part_of=UBERON:0011137 | ||
Latest revision as of 18:09, 12 September 2014
| Name: | cranial skeletal system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Skeletal subdivision of the head including skull (cranium plus mandible), pharyngeal and/or hyoid apparatus." [VSAO:0000049] | ||
| Xrefs: |
| ||
| Synonyms: |
"cranial skeleton" NARROW [] "cranium" RELATED INCONSISTENT [ZFA:0000737] | ||
| Comments: | Note that the cranial skeleton includes the pharyngeal arch skeleton. It is thus more inclusive that the cranium itself, and extends beyond the head in tetrapods. The AAO class called 'skull' belongs here, as it includes the whole splanchnocranium. Editor notes: we use 'cranial skeletal system', so that we can include the skull, which has joints/sutures as parts (recall, we follow FMA in distinguishing between the skeleton and skeletal system - only the latter includes joints) |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000075(subdivision of skeletal system) |
|---|---|
| part_of: | UBERON:0011137(axial skeletal system) |
Children
| part of: | UBERON:0003113 (dermatocranium),UBERON:0003129 (skull),UBERON:0003672 (dentition),UBERON:0011159 (primary subdivision of cranial skeletal system) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10195-103E6 (olfactory region, adult)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
- 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
- 11929-125I3 (Mallassez-derived cells, donor2)
- 11930-125I4 (Mallassez-derived cells, donor3)
... further results Mouse (Mus musculus)
- 10195-103E6 (olfactory region, adult)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
- 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
- 11929-125I3 (Mallassez-derived cells, donor2)
- 11930-125I4 (Mallassez-derived cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010323 (cranial skeletal system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr9:42206730..42206739, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_c6dd7ae36987a858c25c02140b74a2a6 | p12@B3galt5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr1:93235253..93235264, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr11:4689837..4689845, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr8:94180607..94180619, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr1:94627290..94627299, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_c6dd7ae36987a858c25c02140b74a2a6 | p4@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr1:182528371..182528385, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr7:141605556..141605563, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_c6dd7ae36987a858c25c02140b74a2a6 | p2@Plscr5 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr2:152453066..152453075, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr5:144115382..144115389, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr5:28035962..28035983, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr1:172843847..172843880, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_c6dd7ae36987a858c25c02140b74a2a6 | p7@Pkn3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr8:13414289..13414295, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr2:53464178..53464186, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr1:78523144..78523177, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr14:102297747..102297765, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr15:65641741..65641748, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr7:139597684..139597691, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_c6dd7ae36987a858c25c02140b74a2a6 | p41@Cacnb2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr3:154459246..154459253, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr11:89702580..89702593, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr17:27252925..27252939, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr13:37195838..37195870, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr15:103146966..103146971, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr7:27964761..27964768, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_c6dd7ae36987a858c25c02140b74a2a6 | p3@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_c6dd7ae36987a858c25c02140b74a2a6 | p4@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr11:94371127..94371139, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_c6dd7ae36987a858c25c02140b74a2a6 | p1@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr15:58022966..58022995, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr15:89215319..89215330, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_c6dd7ae36987a858c25c02140b74a2a6 | p2@Tomt |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_c6dd7ae36987a858c25c02140b74a2a6 | p2@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr5:3909290..3909299, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr10:67371994..67372010, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr6:29428397..29428407, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_c6dd7ae36987a858c25c02140b74a2a6 | p4@Kncn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr17:13983095..13983100, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr9:42207697..42207705, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr4:130461150..130461185, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr17:13983095..13983100, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr1:94627290..94627299, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr13:43699228..43699239, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr12:109905468..109905474, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_c6dd7ae36987a858c25c02140b74a2a6 | p2@Tectb |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr16:93971367..93971379, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr15:97806034..97806061, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_c6dd7ae36987a858c25c02140b74a2a6 | p3@Ptprq |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_c6dd7ae36987a858c25c02140b74a2a6 | p18@Trpm3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr18:81314626..81314636, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr2:75320183..75320189, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr9:41495920..41495928, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr2:53464178..53464186, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr17:13983198..13983203, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr7:29733825..29733837, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr1:93235228..93235249, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr6:113251606..113251613, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr2:170417150..170417155, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr18:66033526..66033539, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr14:31283085..31283097, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr15:85334335..85334353, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr7:29733825..29733837, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_c6dd7ae36987a858c25c02140b74a2a6 | p1@Otol1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr5:150945209..150945220, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr12:109905399..109905416, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr14:31283085..31283097, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr13:58283583..58283607, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr12:13508015..13508019, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_c6dd7ae36987a858c25c02140b74a2a6 | p1@Tmprss7 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr6:113251614..113251623, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_c6dd7ae36987a858c25c02140b74a2a6 | p1@Dytn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr19:10536767..10536777, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr15:103146966..103146971, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr3:154459231..154459240, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_c6dd7ae36987a858c25c02140b74a2a6 | p1@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_c6dd7ae36987a858c25c02140b74a2a6 | p6@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_c6dd7ae36987a858c25c02140b74a2a6 | p4@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_c6dd7ae36987a858c25c02140b74a2a6 | p1@Tomt |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_c6dd7ae36987a858c25c02140b74a2a6 | p12@B3galt5 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr4:101908153..101908163, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_c6dd7ae36987a858c25c02140b74a2a6 | p2@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr12:13572961..13572974, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_c6dd7ae36987a858c25c02140b74a2a6 | p1@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr13:43699228..43699239, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr15:58022966..58022995, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr9:42207397..42207408, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_c6dd7ae36987a858c25c02140b74a2a6 | p1@Kcna10 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr13:58283583..58283607, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr6:86746562..86746579, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_c6dd7ae36987a858c25c02140b74a2a6 | p3@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chrX:154140781..154140788, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_c6dd7ae36987a858c25c02140b74a2a6 | p@chrX:154140781..154140788, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_c6dd7ae36987a858c25c02140b74a2a6 | p2@Otol1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr9:42206745..42206774, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_c6dd7ae36987a858c25c02140b74a2a6 | p2@Gm1322 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr14:63099970..63099980, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_c6dd7ae36987a858c25c02140b74a2a6 | p@chr9:41495920..41495928, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Bony structure that encases the central nervous system and the primary sense organs of sight, olfaction, hearing, and equilibrium.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal system which is part of the skull, including the splanchnocranium, chondrocranium, and dermatocranium.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
