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UBERON:0003129

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Name:skull
Namespace:FANTOM
Definition:"Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." [http://sourceforge.net/tracker/?func
Xrefs:
links:

BTO:0001295
EHDAA2:0000325
EMAPA:17680
FMA:46565
GAID:82
galen:Skull
MESH:A.02.835.232.781
ncithesaurus:Skull
OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA

SCTID:110530005
Synonyms: "cranial skeleton" RELATED []
"skeletal system of head" RELATED []
Comments:In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. Editor/AO notes: in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000075(subdivision of skeletal system),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0000033(head),UBERON:0010323(cranial skeletal system)



Children

part of:UBERON:0001825 (paranasal sinus),UBERON:0003128 (cranium),UBERON:0005744 (cranial conduit),UBERON:0011158 (primary subdivision of skull)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10195-103E6 (olfactory region, adult)
  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)

... further results Mouse (Mus musculus)

  • 10195-103E6 (olfactory region, adult)
  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003129 (skull), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_40d70c2e6c9363196e5764093c9b0a2ep18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_40d70c2e6c9363196e5764093c9b0a2ep4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Strc
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:94627290..94627299, -
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_40d70c2e6c9363196e5764093c9b0a2ep18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:75320183..75320189, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_40d70c2e6c9363196e5764093c9b0a2ep2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:170417150..170417155, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_40d70c2e6c9363196e5764093c9b0a2ep6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:53464168..53464175, +
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:31283072..31283081, -
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_40d70c2e6c9363196e5764093c9b0a2ep13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_40d70c2e6c9363196e5764093c9b0a2ep4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42207397..42207408, -
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_40d70c2e6c9363196e5764093c9b0a2ep2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_40d70c2e6c9363196e5764093c9b0a2ep4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Otof
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_40d70c2e6c9363196e5764093c9b0a2ep5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_40d70c2e6c9363196e5764093c9b0a2ep12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_40d70c2e6c9363196e5764093c9b0a2ep6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_40d70c2e6c9363196e5764093c9b0a2ep2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:89702580..89702593, -
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:89215333..89215341, +
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_40d70c2e6c9363196e5764093c9b0a2ep7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Strc
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Tecta
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_40d70c2e6c9363196e5764093c9b0a2ep12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_40d70c2e6c9363196e5764093c9b0a2ep3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_40d70c2e6c9363196e5764093c9b0a2ep3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Strc
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:97806034..97806061, +