UBERON:0003129
From FANTOM5_SSTAR
Name: | skull | ||
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Namespace: | FANTOM | ||
Definition: | "Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." [http://sourceforge.net/tracker/?func | ||
Xrefs: |
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Synonyms: |
"cranial skeleton" RELATED [] "skeletal system of head" RELATED [] | ||
Comments: | In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. Editor/AO notes: in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton | ||
Subset: | uberon_slim |
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
is_a: | UBERON:0000075(subdivision of skeletal system),UBERON:0010314(structure with developmental contribution from neural crest) |
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part_of: | UBERON:0000033(head),UBERON:0010323(cranial skeletal system) |
Children
part of: | UBERON:0001825 (paranasal sinus),UBERON:0003128 (cranium),UBERON:0005744 (cranial conduit),UBERON:0011158 (primary subdivision of skull) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10195-103E6 (olfactory region, adult)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
- 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
... further results Mouse (Mus musculus)
- 10195-103E6 (olfactory region, adult)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
- 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003129 (skull), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
1.87e-86 | FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:103146966..103146971, - |
1.87e-86 | FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr8:13414289..13414295, + |
1.87e-86 | FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_40d70c2e6c9363196e5764093c9b0a2e | p11@Tsga14 |
1.87e-86 | FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_40d70c2e6c9363196e5764093c9b0a2e | p1@Gm1322 |
1.87e-86 | FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr19:10536797..10536802, - |
1.87e-86 | FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@uc007rhb.1 |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_40d70c2e6c9363196e5764093c9b0a2e | p11@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:85334335..85334353, + |
1.87e-86 | FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:43454162..43454170, - |
1.87e-86 | FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr12:77084875..77084885, + |
1.87e-86 | FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:100724698..100724706, + |
1.87e-86 | FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr11:114603036..114603048, + |
1.87e-86 | FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr5:72652660..72652667, + |
1.87e-86 | FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:16651649..16651655, + |
1.87e-86 | FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr2:53464178..53464186, + |
1.87e-86 | FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:154459246..154459253, + |
1.87e-86 | FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:35012425..35012439, + |
1.87e-86 | FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_40d70c2e6c9363196e5764093c9b0a2e | p3@Otogl |
1.87e-86 | FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr17:13983179..13983190, + |
1.87e-86 | FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:154459231..154459240, + |
1.87e-86 | FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_40d70c2e6c9363196e5764093c9b0a2e | p1@Tomt |
1.87e-86 | FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr4:130461150..130461185, + |
1.87e-86 | FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr14:47293496..47293510, - |
1.87e-86 | FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_40d70c2e6c9363196e5764093c9b0a2e | p4@BC030867 |
1.87e-86 | FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:194818647..194818660, - |
1.87e-86 | FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr19:55256373..55256384, + |
1.87e-86 | FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr2:53464178..53464186, + |
1.87e-86 | FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:182528371..182528385, + |
1.87e-86 | FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:85334335..85334353, + |
1.87e-86 | FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_40d70c2e6c9363196e5764093c9b0a2e | p2@Espnl |
1.87e-86 | FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr8:94180607..94180619, - |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:42207697..42207705, - |
1.87e-86 | FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr17:13983160..13983167, + |
1.87e-86 | FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr17:27252925..27252939, + |
1.87e-86 | FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_40d70c2e6c9363196e5764093c9b0a2e | p1@Strc |
1.87e-86 | FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr14:31283085..31283097, - |
1.87e-86 | FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:58022966..58022995, - |
1.87e-86 | FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:89215306..89215315, + |
1.87e-86 | FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_40d70c2e6c9363196e5764093c9b0a2e | -, p@chr11:8405038..8405048 |
1.87e-86 | FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_40d70c2e6c9363196e5764093c9b0a2e | p2@Plscr5 |
1.87e-86 | FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr12:13508015..13508019, + |
1.87e-86 | FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_40d70c2e6c9363196e5764093c9b0a2e | +, p@chr4:101908153..101908163 |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_40d70c2e6c9363196e5764093c9b0a2e | p3@Tecta |
1.87e-86 | FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:60561636..60561645, - |
1.87e-86 | FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr8:13414266..13414279, + |
1.87e-86 | FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Strc |
1.87e-86 | FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_40d70c2e6c9363196e5764093c9b0a2e | p5@Otogl |
1.87e-86 | FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr6:113251606..113251613, + |
1.87e-86 | FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr18:38104702..38104718, - |
1.87e-86 | FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:94627290..94627299, - |
1.87e-86 | FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr16:93971357..93971363, - |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:172843847..172843880, - |
1.87e-86 | FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr2:152453066..152453075, - |
1.87e-86 | FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr11:8405038..8405048, - |
1.87e-86 | FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr6:86746562..86746579, - |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_40d70c2e6c9363196e5764093c9b0a2e | p10@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:78257454..78257465, + |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:42207375..42207384, - |
1.87e-86 | FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr6:113251606..113251613, + |
1.87e-86 | FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr14:47293496..47293510, - |
1.87e-86 | FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:43699228..43699239, + |
1.87e-86 | FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_40d70c2e6c9363196e5764093c9b0a2e | p21@Espn |
1.87e-86 | FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@9230102O04Rik |
1.87e-86 | FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr18:38104702..38104718, - |
1.87e-86 | FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:58626291..58626298, - |
1.87e-86 | FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_40d70c2e6c9363196e5764093c9b0a2e | p4@Chrna10 |
1.87e-86 | FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:58626291..58626298, - |
1.87e-86 | FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr18:42158627..42158630, - |
1.87e-86 | FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_40d70c2e6c9363196e5764093c9b0a2e | p9@Ankrd24 |
1.87e-86 | FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_40d70c2e6c9363196e5764093c9b0a2e | p4@Otogl |
1.87e-86 | FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr4:63079735..63079745, - |
1.87e-86 | FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Tmprss3 |
1.87e-86 | FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr7:29733825..29733837, - |
1.87e-86 | FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_40d70c2e6c9363196e5764093c9b0a2e | p4@uc007rhb.1 |
1.87e-86 | FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr5:3909310..3909321, + |
1.87e-86 | FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_40d70c2e6c9363196e5764093c9b0a2e | p3@Kncn |
1.87e-86 | FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_40d70c2e6c9363196e5764093c9b0a2e | p5@Fer1l6 |
1.87e-86 | FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr10:67371994..67372010, + |
1.87e-86 | FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr6:86746562..86746579, - |
1.87e-86 | FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:43699188..43699216, + |
1.87e-86 | FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_40d70c2e6c9363196e5764093c9b0a2e | p4@Chrna10 |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:42206745..42206774, - |
1.87e-86 | FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:37195838..37195870, - |
1.87e-86 | FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:31585340..31585360, + |
1.87e-86 | FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr11:75421384..75421397, + |
1.87e-86 | FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr18:81314626..81314636, + |
1.87e-86 | FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:58022966..58022995, - |
1.87e-86 | FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr4:101908153..101908163, + |
1.87e-86 | FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_40d70c2e6c9363196e5764093c9b0a2e | p18@Trpm3 |
1.87e-86 | FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_40d70c2e6c9363196e5764093c9b0a2e | p1@Grxcr1 |
1.87e-86 | FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr16:93971325..93971337, - |
1.87e-86 | FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:37195838..37195870, - |
1.87e-86 | FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr5:150945209..150945220, + |
1.87e-86 | FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr14:63099970..63099980, - |
1.87e-86 | FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Otof |
1.87e-86 | FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr12:13508015..13508019, + |
1.87e-86 | FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr8:13425469..13425503, + |
1.87e-86 | FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_40d70c2e6c9363196e5764093c9b0a2e | p13@Tsga14 |
1.87e-86 | FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_40d70c2e6c9363196e5764093c9b0a2e | p7@Pkn3 |