UBERON:0003129
From FANTOM5_SSTAR
Name: | skull | ||
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Namespace: | FANTOM | ||
Definition: | "Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." [http://sourceforge.net/tracker/?func | ||
Xrefs: |
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Synonyms: |
"cranial skeleton" RELATED [] "skeletal system of head" RELATED [] | ||
Comments: | In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. Editor/AO notes: in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton | ||
Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000075(subdivision of skeletal system),UBERON:0010314(structure with developmental contribution from neural crest) |
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part_of: | UBERON:0000033(head),UBERON:0010323(cranial skeletal system) |
Children
part of: | UBERON:0001825 (paranasal sinus),UBERON:0003128 (cranium),UBERON:0005744 (cranial conduit),UBERON:0011158 (primary subdivision of skull) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10195-103E6 (olfactory region, adult)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
- 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
... further results Mouse (Mus musculus)
- 10195-103E6 (olfactory region, adult)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
- 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003129 (skull), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
1.87e-86 | FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr2:170417150..170417155, - |
1.87e-86 | FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_40d70c2e6c9363196e5764093c9b0a2e | p9@Otof |
1.87e-86 | FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:182528388..182528403, + |
1.87e-86 | FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr10:108316802..108316807, - |
1.87e-86 | FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr18:66033526..66033539, - |
1.87e-86 | FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_40d70c2e6c9363196e5764093c9b0a2e | p7@Glt25d2 |
1.87e-86 | FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr19:10536797..10536802, - |
1.87e-86 | FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_40d70c2e6c9363196e5764093c9b0a2e | p1@Otog |
1.87e-86 | FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr4:130461150..130461185, + |
1.87e-86 | FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr8:13414289..13414295, + |
1.87e-86 | FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_40d70c2e6c9363196e5764093c9b0a2e | p1@Kncn |
1.87e-86 | FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_40d70c2e6c9363196e5764093c9b0a2e | p15@Mctp1 |
1.87e-86 | FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_40d70c2e6c9363196e5764093c9b0a2e | p1@Tectb |
1.87e-86 | FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_40d70c2e6c9363196e5764093c9b0a2e | p41@Cacnb2 |
1.87e-86 | FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:172843796..172843799, - |
1.87e-86 | FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_40d70c2e6c9363196e5764093c9b0a2e | p1@Kncn |
1.87e-86 | FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr2:73232344..73232356, - |
1.87e-86 | FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr10:108316802..108316807, - |
1.87e-86 | FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr2:53464168..53464175, + |
1.87e-86 | FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr14:47293487..47293493, - |
1.87e-86 | FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:31585340..31585360, + |
1.87e-86 | FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_40d70c2e6c9363196e5764093c9b0a2e | p9@Ankrd24 |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_40d70c2e6c9363196e5764093c9b0a2e | p5@Tecta |
1.87e-86 | FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:60561636..60561645, - |
1.87e-86 | FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr12:109905468..109905474, + |
1.87e-86 | FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_40d70c2e6c9363196e5764093c9b0a2e | p1@Tmprss7 |
1.87e-86 | FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr7:141605556..141605563, - |
1.87e-86 | FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@9230102O04Rik |
1.87e-86 | FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_40d70c2e6c9363196e5764093c9b0a2e | p3@Fanca |
1.87e-86 | FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:94627290..94627299, - |
1.87e-86 | FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:43699188..43699216, + |
1.87e-86 | FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:58626291..58626298, - |
1.87e-86 | FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr11:8405038..8405048, - |
1.87e-86 | FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr18:81327205..81327211, + |
1.87e-86 | FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr6:113251570..113251578, + |
1.87e-86 | FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:172843847..172843880, - |
1.87e-86 | FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_40d70c2e6c9363196e5764093c9b0a2e | p18@Trpm3 |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_40d70c2e6c9363196e5764093c9b0a2e | p6@Tecta |
1.87e-86 | FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr17:27252925..27252939, + |
1.87e-86 | FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:66860888..66860899, + |
1.87e-86 | FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr12:13508046..13508055, + |
1.87e-86 | FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Strc |
1.87e-86 | FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Tmprss3 |
1.87e-86 | FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr11:4689837..4689845, - |
1.87e-86 | FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@uc007rhb.1 |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:42206784..42206793, - |
1.87e-86 | FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_40d70c2e6c9363196e5764093c9b0a2e | p2@Plscr5 |
1.87e-86 | FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:154459231..154459240, + |
1.87e-86 | FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_40d70c2e6c9363196e5764093c9b0a2e | p5@Otogl |
1.87e-86 | FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_40d70c2e6c9363196e5764093c9b0a2e | p7@A730017C20Rik |
1.87e-86 | FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_40d70c2e6c9363196e5764093c9b0a2e | p4@BC030867 |
1.87e-86 | FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr12:77084875..77084885, + |
1.87e-86 | FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_40d70c2e6c9363196e5764093c9b0a2e | p7@Pkn3 |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr9:42207397..42207408, - |
1.87e-86 | FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr17:13983160..13983167, + |
1.87e-86 | FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:58283583..58283607, - |
1.87e-86 | FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr5:72652660..72652667, + |
1.87e-86 | FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_40d70c2e6c9363196e5764093c9b0a2e | p4@Gipc3 |
1.87e-86 | FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:12848147..12848162, + |
1.87e-86 | FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:89215319..89215330, + |
1.87e-86 | FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_40d70c2e6c9363196e5764093c9b0a2e | p3@Gm1322 |
1.87e-86 | FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr14:102297728..102297742, + |
1.87e-86 | FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr5:3909310..3909321, + |
1.87e-86 | FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:89215319..89215330, + |
1.87e-86 | FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:16651649..16651655, + |
1.87e-86 | FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr12:13508046..13508055, + |
1.87e-86 | FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr16:93971357..93971363, - |
1.87e-86 | FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr2:128881546..128881553, - |
1.87e-86 | FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr2:73232344..73232356, - |
1.87e-86 | FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_40d70c2e6c9363196e5764093c9b0a2e | p1@Gm1322 |
1.87e-86 | FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_40d70c2e6c9363196e5764093c9b0a2e | p2@Espnl |
1.87e-86 | FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:37195838..37195870, - |
1.87e-86 | FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_40d70c2e6c9363196e5764093c9b0a2e | p13@Tsga14 |
1.87e-86 | FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_40d70c2e6c9363196e5764093c9b0a2e | p5@Otogl |
1.87e-86 | FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:37195838..37195870, - |
1.87e-86 | FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr17:13983160..13983167, + |
1.87e-86 | FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr8:13425469..13425503, + |
1.87e-86 | FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr3:154459231..154459240, + |
1.87e-86 | FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_40d70c2e6c9363196e5764093c9b0a2e | p6@Jag1 |
1.87e-86 | FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_40d70c2e6c9363196e5764093c9b0a2e | p11@Tecta |
1.87e-86 | FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@uc007rhb.1 |
1.87e-86 | FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr14:47293496..47293510, - |
1.87e-86 | FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Tmprss3 |
1.87e-86 | FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr5:150945209..150945220, + |
1.87e-86 | FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr11:11599532..11599539, - |
1.87e-86 | FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr6:86745686..86745727, - |
1.87e-86 | FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr1:182528371..182528385, + |
1.87e-86 | FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr14:20649897..20649907, + |
1.87e-86 | FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_40d70c2e6c9363196e5764093c9b0a2e | p1@Tmc1 |
1.87e-86 | FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@Tecta |
1.87e-86 | FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr2:152453066..152453075, - |
1.87e-86 | FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr5:147854240..147854249, - |
1.87e-86 | FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_40d70c2e6c9363196e5764093c9b0a2e | p2@9230102O04Rik |
1.87e-86 | FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr8:13425469..13425503, + |
1.87e-86 | FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr13:78257454..78257465, + |
1.87e-86 | FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_40d70c2e6c9363196e5764093c9b0a2e | p2@Tectb |
1.87e-86 | FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr19:10536767..10536777, - |
1.87e-86 | FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_40d70c2e6c9363196e5764093c9b0a2e | p@chr15:65641741..65641748, + |
1.87e-86 | FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr5:147854240..147854249, - |
1.87e-86 | FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_40d70c2e6c9363196e5764093c9b0a2e | p@chr18:66033526..66033539, - |