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UBERON:0003129

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Name:skull
Namespace:FANTOM
Definition:"Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." [http://sourceforge.net/tracker/?func
Xrefs:
links:

BTO:0001295
EHDAA2:0000325
EMAPA:17680
FMA:46565
GAID:82
galen:Skull
MESH:A.02.835.232.781
ncithesaurus:Skull
OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA

SCTID:110530005
Synonyms: "cranial skeleton" RELATED []
"skeletal system of head" RELATED []
Comments:In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. Editor/AO notes: in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000075(subdivision of skeletal system),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0000033(head),UBERON:0010323(cranial skeletal system)



Children

part of:UBERON:0001825 (paranasal sinus),UBERON:0003128 (cranium),UBERON:0005744 (cranial conduit),UBERON:0011158 (primary subdivision of skull)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10195-103E6 (olfactory region, adult)
  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)

... further results Mouse (Mus musculus)

  • 10195-103E6 (olfactory region, adult)
  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003129 (skull), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_40d70c2e6c9363196e5764093c9b0a2ep7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_40d70c2e6c9363196e5764093c9b0a2ep21@Espn
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_40d70c2e6c9363196e5764093c9b0a2ep5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_40d70c2e6c9363196e5764093c9b0a2ep15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_40d70c2e6c9363196e5764093c9b0a2ep4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_40d70c2e6c9363196e5764093c9b0a2ep4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_40d70c2e6c9363196e5764093c9b0a2ep5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:89215306..89215315, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42206784..42206793, -
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Strc
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_40d70c2e6c9363196e5764093c9b0a2ep2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_40d70c2e6c9363196e5764093c9b0a2ep11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_40d70c2e6c9363196e5764093c9b0a2ep2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr4:101908153..101908163, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_40d70c2e6c9363196e5764093c9b0a2ep6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_40d70c2e6c9363196e5764093c9b0a2ep4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_40d70c2e6c9363196e5764093c9b0a2ep4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:66033526..66033539, -
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_40d70c2e6c9363196e5764093c9b0a2ep3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_40d70c2e6c9363196e5764093c9b0a2ep11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Otof
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:13508046..13508055, +
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_40d70c2e6c9363196e5764093c9b0a2ep3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Tecta
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_40d70c2e6c9363196e5764093c9b0a2ep2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_40d70c2e6c9363196e5764093c9b0a2ep3@Kncn
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:47293496..47293510, -
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_40d70c2e6c9363196e5764093c9b0a2ep2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_40d70c2e6c9363196e5764093c9b0a2ep@chrX:154140781..154140788, +
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:141605556..141605563, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_40d70c2e6c9363196e5764093c9b0a2ep10@Otof
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:43454162..43454170, -
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Dytn
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr8:13414266..13414279, +

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