FFCP PHASE1:Hg19::chr8:41508327..41508355,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=157848 | |EntrezGene=entrezgene:157848 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=26328 | |HGNC=HGNC:26328 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=A6NJ46 | |UniProt=uniprot:A6NJ46 | ||
|association_with_transcript=-316bp_to_ENST00000425142_5end | |association_with_transcript=-316bp_to_ENST00000425142_5end | ||
|cluster_id=chr8:41508327..41508355,- | |||
|coexpression_cluster_id=C76 | |coexpression_cluster_id=C76 | ||
|description=CAGE_peak_1_at_NKX6-3_5end | |description=CAGE_peak_1_at_NKX6-3_5end | ||
Revision as of 18:25, 31 July 2015
| Short description: | p1@NKX6-3 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_NKX6-3_5end |
| Coexpression cluster: | C76_argyrophil_gastrointestinal_temporal_duodenum_neuroblastoma_merkel_smallcell |
| Association with transcript: | -316bp_to_ENST00000425142_5end |
| EntrezGene: | 157848 |
| HGNC: | 26328 |
| UniProt: | A6NJ46 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@NKX6-3 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell of stomach | 2.72e-27 | 3 |
| epithelial cell of cervix | 1.82e-11 | 2 |
Showing 1 to 2 of 2 entries
| Ontology term | p-value | n |
|---|---|---|
| stomach | 8.05e-23 | 8 |
| food storage organ | 8.05e-23 | 8 |
| gastrointestinal system | 1.45e-12 | 25 |
| uterine epithelium | 1.82e-11 | 2 |
| cervix epithelium | 1.82e-11 | 2 |
| duodenum | 5.54e-08 | 2 |
Showing 1 to 6 of 6 entries
| Ontology term | p-value | n |
|---|---|---|
| signet ring cell adenocarcinoma | 3.01e-40 | 2 |
| islet cell tumor | 7.72e-21 | 1 |
| endocrine pancreas cancer | 7.72e-21 | 1 |
| pancreatic endocrine carcinoma | 7.72e-21 | 1 |
| adenocarcinoma | 4.29e-13 | 25 |
Showing 1 to 5 of 5 entries
