FFCP PHASE1:Mm9::chr4:59202074..59202085,+: Difference between revisions
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{{FFCP|EntrezGene=22234|HGNC=|MCL_coexpression_id=993|UniProt=O88693|association_with_transcript=-43bp_to_ENSMUST00000030074_5end|description=CAGE_peak_3_at_Ugcg_5end|id=chr4:59202074..59202085,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000838,8.21e-07,12|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!4.77e-13!130;UBERON:0000925!4.77e-13!130;UBERON:0006595!4.77e-13!130;UBERON:0001007!3.43e-12!128;UBERON:0001555!3.43e-12!128;UBERON:0007026!3.43e-12!128;UBERON:0004921!2.24e-11!126;UBERON:0004185!2.24e-11!126;UBERON:0000490!7.44e-08!66;UBERON:0002405!1.11e-07!70;UBERON:0003929!3.15e-07!55;UBERON:0004923!3.52e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.22e-15,118;UBERON:0000925,3.22e-15,118;UBERON:0006595,3.22e-15,118;UBERON:0001007,2.86e-14,116;UBERON:0001555,2.86e-14,116;UBERON:0007026,2.86e-14,116;UBERON:0004921,2.30e-13,114;UBERON:0000490,2.39e-08,66;UBERON:0005409,3.61e-08,47;UBERON:0003929,1.02e-07,55;UBERON:0004923,2.26e-07,24|phase1_expression=1.60148847104794,8.72438519098403,12.739978702907,11.7961042409664,19.0340377379612,3.18970616632591,3.50418960893289,5.81054955487093,15.3459707145317,10.2988391581677,3.5955773327356,1.67521533890206,14.8944635040149,9.9659258757657,5.3297561890506,4.04950534779652,4.89693314689703,8.3597473819933,9.1866670515845,6.79023442876848,1.19060606211498,2.58156473122302,4.17919662622297,5.27974995218242,5.96464130774642,9.18771142584032,6.8921919385452,3.66301095566011,6.65081968097309,9.32511480111744,3.32595765982957,0.635030673459631,1.84519436275371,0,1.73310971850765,0.498703936075477,0.612508068787107,8.37063261473815,6.2506827561904,3.14114246384279,11.1763982725893,10.9287277593351,7.2826552954673,1.76255545165808,1.72340783073175,1.65192076945513,0.782391344348039,0.872100625521786,0.659058548203415,1.1665793944457,0.839918529752175,1.43752564364972,8.89247812106003,16.6833292662609,21.5100031451177,1.54355661621568,3.43840127926508,2.06268836910977,0,1.05798195854407,0.633831403506179,3.04960078862219,0.889294796111139,2.2497492932035,2.96659908770092,0,0.599200221036809,0.384218305321555,0,0.540023753326763,0,1.42825492201902,0.662605622854841,0.122490799214954,0.383381884072945,1.83843757322004,0,0.510749352340751,0.614426133024974,0.527545150920775,0.274462930807229,1.04182674111352,0,0.56276261003168,0.30559649555362,0.883885756421003,0.996601765593721,0.372798891650601,2.19605960666234,2.26714680320357,3.47837386442013,3.44169550792555,4.0798280022465,0.539703191637817,1.94932925234301,5.37632264516803,0.983110940922263,1.70430322578058,2.07828803682295,1.41335829804136,0.563373679106722,3.84979432242953,2.54805239706646,0,1.73192832808971,3.04031838570118,0.505524445014783,2.62622923353838,5.43769555659061,3.41416919849097,1.21439728736295,0.608930956624282,0.922461989024234,1.50722640552623,2.11659672844269,2.26199864393416,2.96633961281249,1.01219549843938,6.19227386364912,1.94120219936891,0.662524555381181,2.90925151881133,1.86391761218122,0.585561594023094,0.209446706813455,8.17462576667492,2.99537811264801,1.19980546198682,2.03312363316904,0.299581278809645,1.83000241127451,0.251308704225729,1.39059456153821,0.767146371990992,1.0389402227978,0.324482526135515,0.509196819251581,2.36373244159177,0,0.420883711772948,1.17108398666433,0.919608417733892,0.360124259610698,0.60281927134286,0.95251098811859,0.896796041993948,0.937017245597288,0.258703370739016,0.862271971731369,1.51284864134255,0.527853372491847,1.09597866213787,2.50242524303038,1.39300866608867,1.85203922767149,0.59710280045548,1.40442637462647,1.02939162845886,0.568326998791185,1.24275463521301,0.469052119962192,0.900310307305074,0.23674473558521,0.196764231747404,1.07986979021165,0.232533944750408,0,1.75148013550754,1.31647879930784,1.14917224855367,1.54030738137126,0.730999937126662,1.3173006917463,1.61047702512446,0.630869845692382,0.205809224758569,8.26046957459495,7.40461586657924,0,0.696710015581316,0.902072229254653,0.80673409849337,3.33567065767305,3.42406127002606,6.64340686162316,4.44687177754829,5.52937459360593,5.76973768919337,4.48417400373976,3.59527763461689,5.61958929674205,6.77080329064848,0,0.456994050438915,0,0.407302655690628,0.387904974335251,0.561086559122548,0.505892296994058,0.738050739898011,0.941992367048249,0.740382983530803,1.1858105083486,3.50374722003798,3.73462090715086,2.9232074610031,4.26006254915856,2.41177159752417,2.03700681425136,1.43848068725405,2.59416362840057,4.94210543738547,12.9391385874619,3.34926852901653,4.36852742360385,1.51547326768267,2.33216637578486,1.4473305640901,2.58654466233247,0.757965647081939,0.325929952884052,0.848725428875941,0.938760993154008,1.34005005953453,0.952174563544055,2.92700471786698,0.788175720530955,1.7717175171902,2.71073106717728,3.11340297959902,3.62638461918381,3.32692834737477,3.01582567878545,0.54390568381871,4.42587845717133,4.69092468718045,0.321101179975584,1.05490517932983,0.491804836130026,0.7574127816131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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:22234 | |||
|HGNC= | |||
|MCL_coexpression_id=993 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O88693 | |||
|association_with_transcript=-43bp_to_ENSMUST00000030074_5end | |||
|cluster_id=chr4:59202074..59202085,+ | |||
|description=CAGE_peak_3_at_Ugcg_5end | |||
|id=chr4:59202074..59202085,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,8.21e-07,12 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!4.77e-13!130;UBERON:0000925!4.77e-13!130;UBERON:0006595!4.77e-13!130;UBERON:0001007!3.43e-12!128;UBERON:0001555!3.43e-12!128;UBERON:0007026!3.43e-12!128;UBERON:0004921!2.24e-11!126;UBERON:0004185!2.24e-11!126;UBERON:0000490!7.44e-08!66;UBERON:0002405!1.11e-07!70;UBERON:0003929!3.15e-07!55;UBERON:0004923!3.52e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.22e-15,118;UBERON:0000925,3.22e-15,118;UBERON:0006595,3.22e-15,118;UBERON:0001007,2.86e-14,116;UBERON:0001555,2.86e-14,116;UBERON:0007026,2.86e-14,116;UBERON:0004921,2.30e-13,114;UBERON:0000490,2.39e-08,66;UBERON:0005409,3.61e-08,47;UBERON:0003929,1.02e-07,55;UBERON:0004923,2.26e-07,24 | |||
|phase1_expression=1.60148847104794,8.72438519098403,12.739978702907,11.7961042409664,19.0340377379612,3.18970616632591,3.50418960893289,5.81054955487093,15.3459707145317,10.2988391581677,3.5955773327356,1.67521533890206,14.8944635040149,9.9659258757657,5.3297561890506,4.04950534779652,4.89693314689703,8.3597473819933,9.1866670515845,6.79023442876848,1.19060606211498,2.58156473122302,4.17919662622297,5.27974995218242,5.96464130774642,9.18771142584032,6.8921919385452,3.66301095566011,6.65081968097309,9.32511480111744,3.32595765982957,0.635030673459631,1.84519436275371,0,1.73310971850765,0.498703936075477,0.612508068787107,8.37063261473815,6.2506827561904,3.14114246384279,11.1763982725893,10.9287277593351,7.2826552954673,1.76255545165808,1.72340783073175,1.65192076945513,0.782391344348039,0.872100625521786,0.659058548203415,1.1665793944457,0.839918529752175,1.43752564364972,8.89247812106003,16.6833292662609,21.5100031451177,1.54355661621568,3.43840127926508,2.06268836910977,0,1.05798195854407,0.633831403506179,3.04960078862219,0.889294796111139,2.2497492932035,2.96659908770092,0,0.599200221036809,0.384218305321555,0,0.540023753326763,0,1.42825492201902,0.662605622854841,0.122490799214954,0.383381884072945,1.83843757322004,0,0.510749352340751,0.614426133024974,0.527545150920775,0.274462930807229,1.04182674111352,0,0.56276261003168,0.30559649555362,0.883885756421003,0.996601765593721,0.372798891650601,2.19605960666234,2.26714680320357,3.47837386442013,3.44169550792555,4.0798280022465,0.539703191637817,1.94932925234301,5.37632264516803,0.983110940922263,1.70430322578058,2.07828803682295,1.41335829804136,0.563373679106722,3.84979432242953,2.54805239706646,0,1.73192832808971,3.04031838570118,0.505524445014783,2.62622923353838,5.43769555659061,3.41416919849097,1.21439728736295,0.608930956624282,0.922461989024234,1.50722640552623,2.11659672844269,2.26199864393416,2.96633961281249,1.01219549843938,6.19227386364912,1.94120219936891,0.662524555381181,2.90925151881133,1.86391761218122,0.585561594023094,0.209446706813455,8.17462576667492,2.99537811264801,1.19980546198682,2.03312363316904,0.299581278809645,1.83000241127451,0.251308704225729,1.39059456153821,0.767146371990992,1.0389402227978,0.324482526135515,0.509196819251581,2.36373244159177,0,0.420883711772948,1.17108398666433,0.919608417733892,0.360124259610698,0.60281927134286,0.95251098811859,0.896796041993948,0.937017245597288,0.258703370739016,0.862271971731369,1.51284864134255,0.527853372491847,1.09597866213787,2.50242524303038,1.39300866608867,1.85203922767149,0.59710280045548,1.40442637462647,1.02939162845886,0.568326998791185,1.24275463521301,0.469052119962192,0.900310307305074,0.23674473558521,0.196764231747404,1.07986979021165,0.232533944750408,0,1.75148013550754,1.31647879930784,1.14917224855367,1.54030738137126,0.730999937126662,1.3173006917463,1.61047702512446,0.630869845692382,0.205809224758569,8.26046957459495,7.40461586657924,0,0.696710015581316,0.902072229254653,0.80673409849337,3.33567065767305,3.42406127002606,6.64340686162316,4.44687177754829,5.52937459360593,5.76973768919337,4.48417400373976,3.59527763461689,5.61958929674205,6.77080329064848,0,0.456994050438915,0,0.407302655690628,0.387904974335251,0.561086559122548,0.505892296994058,0.738050739898011,0.941992367048249,0.740382983530803,1.1858105083486,3.50374722003798,3.73462090715086,2.9232074610031,4.26006254915856,2.41177159752417,2.03700681425136,1.43848068725405,2.59416362840057,4.94210543738547,12.9391385874619,3.34926852901653,4.36852742360385,1.51547326768267,2.33216637578486,1.4473305640901,2.58654466233247,0.757965647081939,0.325929952884052,0.848725428875941,0.938760993154008,1.34005005953453,0.952174563544055,2.92700471786698,0.788175720530955,1.7717175171902,2.71073106717728,3.11340297959902,3.62638461918381,3.32692834737477,3.01582567878545,0.54390568381871,4.42587845717133,4.69092468718045,0.321101179975584,1.05490517932983,0.491804836130026,0.757412781613119,2.2085575359138,3.90438744296638,1.93881057959519,0.955875191810208,1.78238939265915,4.81230102341015,2.02405350837447,3.21481443702443,4.34816555741176,0.642642632843614,2.12910127812403,0.890328018336276,1.62886959353576,0.824850614862677,1.32745138339963,0.485561272309963,0,0,0.590603785761546,1.53717573971964,3.35956781118687,1.81766864738753,0.712994756769443,2.52829406348653,4.21674434299995,1.03135543248187,1.36175842301515,0.18006109403131,0.388076051348264,0.214337035031592,0.354680467284547,0.713475270408282,0,0.913394847343798,6.8054795338476,5.08396970073168,5.73373834942901,3.95727007059552,3.71368181400583,2.65376869683886,2.98430860007841,5.0883678920969,5.24665505933731,1.11255181206306,4.95525554313773,1.23832120777933,2.96311243791539,3.76736914009382,3.41735569302563,5.26189798375002,2.88963330989554,3.35883485576779,4.00779924032829,3.81868247206045,0.474503990371703,1.21991680276109,1.72808545314882,1.46361807210128,1.9652630737156,1.61837215661785,4.71124697634415,4.18809507174447,7.64728342421578,3.106696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| |||
|short_description=p3@Ugcg | |||
}} |
Revision as of 15:34, 5 August 2015
Short description: | p3@Ugcg |
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Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ugcg_5end |
Coexpression cluster: | MCL_coexpression_mm9:993 |
Association with transcript: | -43bp_to_ENSMUST00000030074_5end |
EntrezGene: | 22234 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 8.21e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 3.22e-15 | 118 |
endoderm | 3.22e-15 | 118 |
presumptive endoderm | 3.22e-15 | 118 |
digestive system | 2.86e-14 | 116 |
digestive tract | 2.86e-14 | 116 |
primitive gut | 2.86e-14 | 116 |
subdivision of digestive tract | 2.30e-13 | 114 |
unilaminar epithelium | 2.39e-08 | 66 |
gastrointestinal system | 3.61e-08 | 47 |
gut epithelium | 1.02e-07 | 55 |
organ component layer | 2.26e-07 | 24 |