FFCP PHASE1:Mm9::chr2:103659822..103659827,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=602|UniProt=|association_with_transcript=-189bp_to_ENSMUST00000118421,ENSMUST00000167989_5end|description=CAGE_peak_1_at_ENSMUST00000118421_5end,CAGE_peak_1_at_ENSMUST00000167989_5end|id=chr2:103659822..103659827,-|ontology_enrichment_celltype=CL:0000117!9.06e-14!23;CL:0000337!9.06e-14!23;CL:0002612!4.25e-13!3;CL:0000540!2.56e-11!33;CL:0000047!2.56e-11!33;CL:0000031!2.56e-11!33;CL:0000404!2.56e-11!33;CL:0002319!3.91e-10!43;CL:0000221!7.34e-10!44;CL:0000133!7.34e-10!44;CL:0000393!2.53e-09!39;CL:0000211!2.53e-09!39;CL:0000055!1.89e-08!50;CL:0002610!7.10e-07!3|ontology_enrichment_celltype_v019_2=CL:0002610,2.66e-39,3;CL:0000117,2.24e-12,23;CL:0000337,2.24e-12,23;CL:0002614,5.71e-11,3;CL:0000540,6.05e-09,33;CL:0000047,6.05e-09,33;CL:0000031,6.05e-09,33;CL:0000404,6.05e-09,33;CL:0000393,1.01e-07,39;CL:0000211,1.01e-07,39;CL:0002319,4.30e-07,43;CL:0000221,5.93e-07,44;CL:0000133,5.93e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001948!1.03e-13!5;UBERON:0002315!1.03e-13!5;UBERON:0002257!4.25e-13!3;UBERON:0002240!1.88e-11!6;UBERON:0005174!1.88e-11!6;UBERON:0001137!1.88e-11!6;UBERON:0002020!7.03e-07!34;UBERON:0004684!7.10e-07!3;UBERON:0002275!7.10e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0004684,2.66e-39,3;UBERON:0002275,2.66e-39,3;UBERON:0002038,5.71e-11,3;UBERON:0009663,5.71e-11,3;UBERON:0009661,5.71e-11,3;UBERON:0000125,5.71e-11,3;UBERON:0002308,5.71e-11,3;UBERON:0002950,1.46e-08,4;UBERON:0001891,1.46e-08,4;UBERON:0009616,1.46e-08,4;UBERON:0010286,1.46e-08,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.388859798148567,0,0,0,0.725362142011344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270011876663381,0,0.571301968807607,0,0,0,0,0,2.68143409978894,1.22885226604995,0,0.457438218012048,0,2.23346399201105,0,0,0.294628585473668,0.427115042397309,0.372798891650601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0.215423397732799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161464426695906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0.191288332068843,0,0|short_description=p1@ENSMUST00000118421,p1@ENSMUST00000167989}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=602 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-189bp_to_ENSMUST00000118421,ENSMUST00000167989_5end | |||
|cluster_id=chr2:103659822..103659827,- | |||
|description=CAGE_peak_1_at_ENSMUST00000118421_5end,CAGE_peak_1_at_ENSMUST00000167989_5end | |||
|id=chr2:103659822..103659827,- | |||
|ontology_enrichment_celltype=CL:0000117!9.06e-14!23;CL:0000337!9.06e-14!23;CL:0002612!4.25e-13!3;CL:0000540!2.56e-11!33;CL:0000047!2.56e-11!33;CL:0000031!2.56e-11!33;CL:0000404!2.56e-11!33;CL:0002319!3.91e-10!43;CL:0000221!7.34e-10!44;CL:0000133!7.34e-10!44;CL:0000393!2.53e-09!39;CL:0000211!2.53e-09!39;CL:0000055!1.89e-08!50;CL:0002610!7.10e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,2.66e-39,3;CL:0000117,2.24e-12,23;CL:0000337,2.24e-12,23;CL:0002614,5.71e-11,3;CL:0000540,6.05e-09,33;CL:0000047,6.05e-09,33;CL:0000031,6.05e-09,33;CL:0000404,6.05e-09,33;CL:0000393,1.01e-07,39;CL:0000211,1.01e-07,39;CL:0002319,4.30e-07,43;CL:0000221,5.93e-07,44;CL:0000133,5.93e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001948!1.03e-13!5;UBERON:0002315!1.03e-13!5;UBERON:0002257!4.25e-13!3;UBERON:0002240!1.88e-11!6;UBERON:0005174!1.88e-11!6;UBERON:0001137!1.88e-11!6;UBERON:0002020!7.03e-07!34;UBERON:0004684!7.10e-07!3;UBERON:0002275!7.10e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,2.66e-39,3;UBERON:0002275,2.66e-39,3;UBERON:0002038,5.71e-11,3;UBERON:0009663,5.71e-11,3;UBERON:0009661,5.71e-11,3;UBERON:0000125,5.71e-11,3;UBERON:0002308,5.71e-11,3;UBERON:0002950,1.46e-08,4;UBERON:0001891,1.46e-08,4;UBERON:0009616,1.46e-08,4;UBERON:0010286,1.46e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.388859798148567,0,0,0,0.725362142011344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270011876663381,0,0.571301968807607,0,0,0,0,0,2.68143409978894,1.22885226604995,0,0.457438218012048,0,2.23346399201105,0,0,0.294628585473668,0.427115042397309,0.372798891650601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0.215423397732799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161464426695906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0.191288332068843,0,0 | |||
|short_description=p1@ENSMUST00000118421,p1@ENSMUST00000167989 | |||
}} |
Latest revision as of 07:44, 6 August 2015
Short description: | p1@ENSMUST00000118421, p1@ENSMUST00000167989 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENSMUST00000118421_5end, CAGE_peak_1_at_ENSMUST00000167989_5end |
Coexpression cluster: | MCL_coexpression_mm9:602 |
Association with transcript: | -189bp_to_ENSMUST00000118421, ENSMUST00000167989_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 2.66e-39 | 3 |
CNS neuron (sensu Vertebrata) | 2.24e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.24e-12 | 23 |
neuron of the substantia nigra | 5.71e-11 | 3 |
neuron | 6.05e-09 | 33 |
neuronal stem cell | 6.05e-09 | 33 |
neuroblast | 6.05e-09 | 33 |
electrically signaling cell | 6.05e-09 | 33 |
electrically responsive cell | 1.01e-07 | 39 |
electrically active cell | 1.01e-07 | 39 |
neural cell | 4.30e-07 | 43 |
ectodermal cell | 5.93e-07 | 44 |
neurectodermal cell | 5.93e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 2.66e-39 | 3 |
reticular formation | 2.66e-39 | 3 |
substantia nigra | 5.71e-11 | 3 |
telencephalic nucleus | 5.71e-11 | 3 |
midbrain nucleus | 5.71e-11 | 3 |
neural nucleus | 5.71e-11 | 3 |
nucleus of brain | 5.71e-11 | 3 |
regional part of midbrain | 1.46e-08 | 4 |
midbrain | 1.46e-08 | 4 |
presumptive midbrain | 1.46e-08 | 4 |
midbrain neural tube | 1.46e-08 | 4 |