FFCP PHASE2:Hg19::chr21:47545788..47545804,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:1292 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding |HGNC=HGNC:2212 |TSSclassifier=strong ...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | ||
|HGNC= | |HGNC=2212 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
Latest revision as of 23:03, 18 September 2015
| Short description: | p42@COL6A2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_42_at_COL6A2_5end |
| Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
| Association with transcript: | -92bp_to_AL360197_5end |
| EntrezGene: | COL6A2 |
| HGNC: | 2212 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p42@COL6A2 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| fibroblast | 4.91e-14 | 76 |
| stromal cell | 1.10e-13 | 28 |
| hair follicle cell | 4.34e-11 | 5 |
| fibrocyte | 7.07e-11 | 3 |
| tendon cell | 7.07e-11 | 3 |
| subcutaneous fat cell | 1.35e-10 | 3 |
| nucleus pulposus cell of intervertebral disc | 4.48e-10 | 3 |
| hepatic stellate cell | 7.12e-10 | 3 |
| extracellular matrix secreting cell | 2.72e-09 | 15 |
| multi fate stem cell | 5.28e-09 | 427 |
Showing 1 to 10 of 16 entries
| Ontology term | p-value | n |
|---|---|---|
| hypodermis | 2.23e-16 | 5 |
| hair follicle | 4.34e-11 | 5 |
| hair follicle placode | 4.34e-11 | 5 |
| dense regular connective tissue | 7.07e-11 | 3 |
| tendon | 7.07e-11 | 3 |
| regular connective tissue | 7.07e-11 | 3 |
| subcutaneous adipose tissue | 1.35e-10 | 3 |
| integument | 3.78e-10 | 46 |
| integumental system | 3.78e-10 | 46 |
| nucleus pulposus | 4.48e-10 | 3 |
Showing 1 to 10 of 24 entries
