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MCL coexpression mm9:179

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:75297147..75297177,-p1@Gstt2
Mm9::chr10:79430049..79430088,+p@chr10:79430049..79430088
+
Mm9::chr11:114712929..114712960,+p4@Gprc5c
Mm9::chr11:114712971..114712980,+p17@Gprc5c
Mm9::chr11:120354807..120354815,-p@chr11:120354807..120354815
-
Mm9::chr11:31774319..31774345,+p@chr11:31774319..31774345
+
Mm9::chr11:61178547..61178552,-p@chr11:61178547..61178552
-
Mm9::chr11:61191554..61191587,-p1@Slc47a1
Mm9::chr11:61191605..61191610,-p4@Slc47a1
Mm9::chr11:84256146..84256170,-p@chr11:84256146..84256170
-
Mm9::chr12:58298278..58298292,-p4@Slc25a21
Mm9::chr12:58298298..58298317,-p3@Slc25a21
Mm9::chr12:73185700..73185732,-p4@2810055F11Rik
Mm9::chr12:77356440..77356459,+p4@Mthfd1
Mm9::chr12:77356470..77356481,+p7@Mthfd1
Mm9::chr13:23931314..23931339,+p1@Slc17a3
Mm9::chr13:23931467..23931489,+p3@Slc17a3
Mm9::chr13:58224772..58224789,-p@chr13:58224772..58224789
-
Mm9::chr14:20527239..20527275,+p@chr14:20527239..20527275
+
Mm9::chr15:54784494..54784530,+p1@ENSMUST00000155817
Mm9::chr15:82623355..82623370,-p@chr15:82623355..82623370
-
Mm9::chr15:82624876..82624892,-p5@Cyp2d26
Mm9::chr15:89165401..89165410,+p3@Miox
Mm9::chr16:45945697..45945754,+p1@ENSMUST00000128159
p1@ENSMUST00000134359
p1@ENSMUST00000154775
p1@uc007zjd.1
Mm9::chr17:74998551..74998572,+p@chr17:74998551..74998572
+
Mm9::chr19:12707846..12707859,+p4@Glyat
Mm9::chr19:8337680..8337689,-p@chr19:8337680..8337689
-
Mm9::chr1:135142669..135142676,+p1@Plekha6
Mm9::chr1:74059793..74059804,-p@chr1:74059793..74059804
-
Mm9::chr2:105064444..105064465,+p2@0610012H03Rik
Mm9::chr2:105064471..105064514,+p1@0610012H03Rik
Mm9::chr2:126371344..126371355,+p@chr2:126371344..126371355
+
Mm9::chr2:12845680..12845740,+p1@Pter
Mm9::chr2:131154718..131154725,-p5@Rnf24
Mm9::chr2:167673323..167673334,-p@chr2:167673323..167673334
-
Mm9::chr2:180778245..180778259,-p5@Chrna4
Mm9::chr2:180778296..180778309,-p6@Chrna4
Mm9::chr2:3622059..3622070,+p5@Fam107b
Mm9::chr3:82814326..82814338,-p@chr3:82814326..82814338
-
Mm9::chr4:100151755..100151775,+p2@Ube2u
Mm9::chr4:100151781..100151786,+p5@Ube2u
Mm9::chr4:116332157..116332165,-p@chr4:116332157..116332165
-
Mm9::chr4:150283537..150283568,-p5@Park7
Mm9::chr4:95246108..95246119,+p4@Fggy
Mm9::chr5:97168683..97168705,-p@chr5:97168683..97168705
-
Mm9::chr6:71094334..71094350,-p1@Thnsl2
Mm9::chr7:126669694..126669714,+p4@Acsm5
Mm9::chr7:126763769..126763851,-p1@uc009jlk.1
Mm9::chr7:148280787..148280848,-p@chr7:148280787..148280848
-
Mm9::chr7:150662037..150662065,+p@chr7:150662037..150662065
+
Mm9::chr8:73247438..73247472,-p@chr8:73247438..73247472
-
Mm9::chr8:73247943..73247958,+p3@Pde4c
Mm9::chr8:73247966..73247977,+p4@Pde4c
Mm9::chr8:86527005..86527017,+p@chr8:86527005..86527017
+
Mm9::chr9:106350084..106350111,+p@chr9:106350084..106350111
+
Mm9::chr9:119266692..119266722,+p1@Xylb


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005739mitochondrion0.039404521968793
GO:0018112proline racemase activity0.039404521968793
GO:0050113inositol oxygenase activity0.039404521968793
GO:0004856xylulokinase activity0.039404521968793
GO:0006790sulfur metabolic process0.039404521968793
GO:0030534adult behavior0.039404521968793
GO:0000105histidine biosynthetic process0.039404521968793
GO:0004486methylenetetrahydrofolate dehydrogenase activity0.039404521968793
GO:0009076histidine family amino acid biosynthetic process0.039404521968793
GO:0001960negative regulation of cytokine and chemokine mediated signaling pathway0.039404521968793
GO:0045079negative regulation of chemokine biosynthetic process0.039404521968793
GO:0004477methenyltetrahydrofolate cyclohydrolase activity0.039404521968793
GO:0005118sevenless binding0.039404521968793
GO:0004795threonine synthase activity0.039404521968793
GO:0004329formate-tetrahydrofolate ligase activity0.039404521968793
GO:0004488methylenetetrahydrofolate dehydrogenase (NADP+) activity0.039404521968793
GO:0016155formyltetrahydrofolate dehydrogenase activity0.039404521968793
GO:0047961glycine N-acyltransferase activity0.039404521968793
GO:0051934catecholamine uptake during transmission of nerve impulse0.039404521968793
GO:0051583dopamine uptake0.039404521968793
GO:0060081membrane hyperpolarization0.039404521968793
GO:0016838carbon-oxygen lyase activity, acting on phosphates0.039404521968793
GO:0001959regulation of cytokine and chemokine mediated signaling pathway0.039404521968793
GO:0006855multidrug transport0.039404521968793
GO:0016855racemase and epimerase activity, acting on amino acids and derivatives0.039404521968793
GO:0060080regulation of inhibitory postsynaptic membrane potential0.039404521968793
GO:0051937catecholamine transport0.039404521968793
GO:0042732D-xylose metabolic process0.039404521968793
GO:0001505regulation of neurotransmitter levels0.0478113021337323
GO:0019238cyclohydrolase activity0.0490112222716904



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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