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MCL coexpression mm9:179

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:75297147..75297177,-p1@Gstt2
Mm9::chr10:79430049..79430088,+p@chr10:79430049..79430088
+
Mm9::chr11:114712929..114712960,+p4@Gprc5c
Mm9::chr11:114712971..114712980,+p17@Gprc5c
Mm9::chr11:120354807..120354815,-p@chr11:120354807..120354815
-
Mm9::chr11:31774319..31774345,+p@chr11:31774319..31774345
+
Mm9::chr11:61178547..61178552,-p@chr11:61178547..61178552
-
Mm9::chr11:61191554..61191587,-p1@Slc47a1
Mm9::chr11:61191605..61191610,-p4@Slc47a1
Mm9::chr11:84256146..84256170,-p@chr11:84256146..84256170
-
Mm9::chr12:58298278..58298292,-p4@Slc25a21
Mm9::chr12:58298298..58298317,-p3@Slc25a21
Mm9::chr12:73185700..73185732,-p4@2810055F11Rik
Mm9::chr12:77356440..77356459,+p4@Mthfd1
Mm9::chr12:77356470..77356481,+p7@Mthfd1
Mm9::chr13:23931314..23931339,+p1@Slc17a3
Mm9::chr13:23931467..23931489,+p3@Slc17a3
Mm9::chr13:58224772..58224789,-p@chr13:58224772..58224789
-
Mm9::chr14:20527239..20527275,+p@chr14:20527239..20527275
+
Mm9::chr15:54784494..54784530,+p1@ENSMUST00000155817
Mm9::chr15:82623355..82623370,-p@chr15:82623355..82623370
-
Mm9::chr15:82624876..82624892,-p5@Cyp2d26
Mm9::chr15:89165401..89165410,+p3@Miox
Mm9::chr16:45945697..45945754,+p1@ENSMUST00000128159
p1@ENSMUST00000134359
p1@ENSMUST00000154775
p1@uc007zjd.1
Mm9::chr17:74998551..74998572,+p@chr17:74998551..74998572
+
Mm9::chr19:12707846..12707859,+p4@Glyat
Mm9::chr19:8337680..8337689,-p@chr19:8337680..8337689
-
Mm9::chr1:135142669..135142676,+p1@Plekha6
Mm9::chr1:74059793..74059804,-p@chr1:74059793..74059804
-
Mm9::chr2:105064444..105064465,+p2@0610012H03Rik
Mm9::chr2:105064471..105064514,+p1@0610012H03Rik
Mm9::chr2:126371344..126371355,+p@chr2:126371344..126371355
+
Mm9::chr2:12845680..12845740,+p1@Pter
Mm9::chr2:131154718..131154725,-p5@Rnf24
Mm9::chr2:167673323..167673334,-p@chr2:167673323..167673334
-
Mm9::chr2:180778245..180778259,-p5@Chrna4
Mm9::chr2:180778296..180778309,-p6@Chrna4
Mm9::chr2:3622059..3622070,+p5@Fam107b
Mm9::chr3:82814326..82814338,-p@chr3:82814326..82814338
-
Mm9::chr4:100151755..100151775,+p2@Ube2u
Mm9::chr4:100151781..100151786,+p5@Ube2u
Mm9::chr4:116332157..116332165,-p@chr4:116332157..116332165
-
Mm9::chr4:150283537..150283568,-p5@Park7
Mm9::chr4:95246108..95246119,+p4@Fggy
Mm9::chr5:97168683..97168705,-p@chr5:97168683..97168705
-
Mm9::chr6:71094334..71094350,-p1@Thnsl2
Mm9::chr7:126669694..126669714,+p4@Acsm5
Mm9::chr7:126763769..126763851,-p1@uc009jlk.1
Mm9::chr7:148280787..148280848,-p@chr7:148280787..148280848
-
Mm9::chr7:150662037..150662065,+p@chr7:150662037..150662065
+
Mm9::chr8:73247438..73247472,-p@chr8:73247438..73247472
-
Mm9::chr8:73247943..73247958,+p3@Pde4c
Mm9::chr8:73247966..73247977,+p4@Pde4c
Mm9::chr8:86527005..86527017,+p@chr8:86527005..86527017
+
Mm9::chr9:106350084..106350111,+p@chr9:106350084..106350111
+
Mm9::chr9:119266692..119266722,+p1@Xylb


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005739mitochondrion0.039404521968793
GO:0018112proline racemase activity0.039404521968793
GO:0050113inositol oxygenase activity0.039404521968793
GO:0004856xylulokinase activity0.039404521968793
GO:0006790sulfur metabolic process0.039404521968793
GO:0030534adult behavior0.039404521968793
GO:0000105histidine biosynthetic process0.039404521968793
GO:0004486methylenetetrahydrofolate dehydrogenase activity0.039404521968793
GO:0009076histidine family amino acid biosynthetic process0.039404521968793
GO:0001960negative regulation of cytokine and chemokine mediated signaling pathway0.039404521968793
GO:0045079negative regulation of chemokine biosynthetic process0.039404521968793
GO:0004477methenyltetrahydrofolate cyclohydrolase activity0.039404521968793
GO:0005118sevenless binding0.039404521968793
GO:0004795threonine synthase activity0.039404521968793
GO:0004329formate-tetrahydrofolate ligase activity0.039404521968793
GO:0004488methylenetetrahydrofolate dehydrogenase (NADP+) activity0.039404521968793
GO:0016155formyltetrahydrofolate dehydrogenase activity0.039404521968793
GO:0047961glycine N-acyltransferase activity0.039404521968793
GO:0051934catecholamine uptake during transmission of nerve impulse0.039404521968793
GO:0051583dopamine uptake0.039404521968793
GO:0060081membrane hyperpolarization0.039404521968793
GO:0016838carbon-oxygen lyase activity, acting on phosphates0.039404521968793
GO:0001959regulation of cytokine and chemokine mediated signaling pathway0.039404521968793
GO:0006855multidrug transport0.039404521968793
GO:0016855racemase and epimerase activity, acting on amino acids and derivatives0.039404521968793
GO:0060080regulation of inhibitory postsynaptic membrane potential0.039404521968793
GO:0051937catecholamine transport0.039404521968793
GO:0042732D-xylose metabolic process0.039404521968793
GO:0001505regulation of neurotransmitter levels0.0478113021337323
GO:0019238cyclohydrolase activity0.0490112222716904



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
metabolising cell6.09e-075
endopolyploid cell6.09e-075
parenchymal cell6.09e-075
polyploid cell6.09e-075
hepatocyte6.09e-075

Uber Anatomy
Ontology termp-valuen
liver1.01e-3122
epithelial sac1.01e-3122
digestive gland1.01e-3122
epithelium of foregut-midgut junction1.01e-3122
anatomical boundary1.01e-3122
hepatobiliary system1.01e-3122
foregut-midgut junction1.01e-3122
hepatic diverticulum1.01e-3122
liver primordium1.01e-3122
septum transversum1.01e-3122
liver bud1.01e-3122
digestive tract diverticulum4.30e-3023
sac4.30e-3023
exocrine gland3.16e-2725
exocrine system3.16e-2725
abdomen element2.53e-2549
abdominal segment element2.53e-2549
abdominal segment of trunk2.53e-2549
abdomen2.53e-2549
mesenchyme8.11e-1961
entire embryonic mesenchyme8.11e-1961
subdivision of trunk8.22e-1766
trunk region element8.35e-1379
trunk mesenchyme1.18e-1245
epithelial tube6.87e-1247
trunk2.43e-1090
gut epithelium2.13e-0955
endocrine gland3.43e-0860
kidney5.48e-0814
kidney mesenchyme5.48e-0814
upper urinary tract5.48e-0814
kidney rudiment5.48e-0814
kidney field5.48e-0814
gland3.52e-0765
unilaminar epithelium5.35e-0766


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.000390971
MA0004.10.656262
MA0006.10.106918
MA0007.10.608563
MA0009.10.195679
MA0014.10.00594766
MA0017.14.78802
MA0019.10.321271
MA0024.10.169279
MA0025.10.359432
MA0027.11.6764
MA0028.10.0507082
MA0029.10.156779
MA0030.10.939214
MA0031.11.38136
MA0038.10.438851
MA0040.10.588303
MA0041.10.954155
MA0042.11.20986
MA0043.10.259277
MA0046.15.22153
MA0048.10.118821
MA0050.10.107278
MA0051.10.792265
MA0052.11.13218
MA0055.10.0393274
MA0056.10
MA0057.10.148589
MA0058.10.857801
MA0059.10.637648
MA0060.10.00306365
MA0061.10.961082
MA0063.10
MA0066.10.736091
MA0067.11.13782
MA0068.10.241154
MA0069.10.600982
MA0070.10.202696
MA0071.10.782474
MA0072.11.08812
MA0073.15.92392e-09
MA0074.10.638457
MA0076.10.0244547
MA0077.10.541586
MA0078.10.518995
MA0081.10.133774
MA0083.10.258729
MA0084.10.734341
MA0087.10.229568
MA0088.10.0148442
MA0089.10
MA0090.10.325885
MA0091.10.089489
MA0092.10.831457
MA0093.10.859661
MA0095.10
MA0098.10
MA0100.10.336128
MA0101.10.432979
MA0103.10.692367
MA0105.10.232534
MA0106.10.250337
MA0107.10.927832
MA0108.20.107804
MA0109.10
MA0111.10.592646
MA0113.11.25601
MA0114.15.96388
MA0115.11.33184
MA0116.10.207162
MA0117.10.672348
MA0119.11.30049
MA0122.10.252653
MA0124.11.0443
MA0125.10.346998
MA0130.10
MA0131.11.08412
MA0132.10
MA0133.10
MA0135.10.284899
MA0136.10.172597
MA0139.10.273743
MA0140.10.144576
MA0141.10.334648
MA0142.10.822705
MA0143.11.32067
MA0144.10.218278
MA0145.10.00941768
MA0146.10.00093471
MA0147.11.05304
MA0148.12.36309
MA0149.10.008672
MA0062.20.00245895
MA0035.20.0376645
MA0039.20.000422193
MA0138.20.0916474
MA0002.20.780431
MA0137.20.180503
MA0104.20.487089
MA0047.22.1734
MA0112.20.242985
MA0065.23.20243
MA0150.11.26512
MA0151.10
MA0152.10.197773
MA0153.17.21204
MA0154.10.503134
MA0155.10.323785
MA0156.10.305036
MA0157.11.22912
MA0158.10
MA0159.11.12616
MA0160.11.0574
MA0161.10
MA0162.10.000135611
MA0163.10.00602321
MA0164.11.07074
MA0080.20.0651063
MA0018.20.407993
MA0099.20.29874
MA0079.22.87989e-08
MA0102.20.782545
MA0258.10.852729
MA0259.10.52741
MA0442.10
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