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MCL coexpression mm9:1091

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:84683533..84683609,-p2@Ggnbp2
Mm9::chr11:84683630..84683684,-p3@Ggnbp2
Mm9::chr11:84684214..84684309,-p1@Ggnbp2
Mm9::chr19:46227013..46227056,+p1@Gbf1
Mm9::chr1:192752380..192752429,+p2@Angel2
Mm9::chr6:86683262..86683388,-p1@Gmcl1
Mm9::chr6:97129094..97129153,-p1@Tmf1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0007283spermatogenesis0.0120815599975684
GO:0048232male gamete generation0.0120815599975684
GO:0050220prostaglandin-E synthase activity0.0120815599975684
GO:0007276gamete generation0.0120815599975684
GO:0019953sexual reproduction0.013172754452041
GO:0015035protein disulfide oxidoreductase activity0.0142935359858534
GO:0046457prostanoid biosynthetic process0.0142935359858534
GO:0001516prostaglandin biosynthetic process0.0142935359858534
GO:0000003reproduction0.0150846207950959
GO:0006693prostaglandin metabolic process0.0154804218436046
GO:0006692prostanoid metabolic process0.0154804218436046
GO:0015036disulfide oxidoreductase activity0.0154804218436046
GO:0016363nuclear matrix0.0164862161938072
GO:0046456icosanoid biosynthetic process0.0244817277806222
GO:0006690icosanoid metabolic process0.0285526234360812
GO:0045454cell redox homeostasis0.0360849429900489
GO:0016860intramolecular oxidoreductase activity0.0360849429900489
GO:0005634nucleus0.0483232202533136
GO:0006633fatty acid biosynthetic process0.0495102897600699
GO:0016053organic acid biosynthetic process0.0495102897600699
GO:0046394carboxylic acid biosynthetic process0.0495102897600699



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
intestine3.35e-0831
endoderm-derived structure8.33e-07118
endoderm8.33e-07118
presumptive endoderm8.33e-07118


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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