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MCL coexpression mm9:1328

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Phase1 CAGE Peaks

 Short description
Mm9::chr12:71328609..71328626,-p1@Pygl
Mm9::chr1:183187792..183187805,-p@chr1:183187792..183187805
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Mm9::chr6:138088819..138088841,+p2@Mgst1
Mm9::chr8:36439699..36439722,+p1@Ppp1r3b
Mm9::chr8:36439734..36439750,+p3@Ppp1r3b
Mm9::chrX:138662827..138662849,+p3@Nxt2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0006073glucan metabolic process0.00056300435164188
GO:0005977glycogen metabolic process0.00056300435164188
GO:0006112energy reserve metabolic process0.00056300435164188
GO:0005976polysaccharide metabolic process0.000613183580318231
GO:0044264cellular polysaccharide metabolic process0.000613183580318231
GO:0015980energy derivation by oxidation of organic compounds0.00101252787028551
GO:0008184glycogen phosphorylase activity0.0049459428233834
GO:0004645phosphorylase activity0.00865397733034007
GO:0044262cellular carbohydrate metabolic process0.00951050988939786
GO:0005975carbohydrate metabolic process0.0166545253887196
GO:0006091generation of precursor metabolites and energy0.0209472227611453
GO:0006749glutathione metabolic process0.0259106685090976
GO:0000267cell fraction0.0259106685090976
GO:0004364glutathione transferase activity0.0283901252252494



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
epithelial tube2.34e-0947
liver6.45e-0822
epithelial sac6.45e-0822
digestive gland6.45e-0822
epithelium of foregut-midgut junction6.45e-0822
anatomical boundary6.45e-0822
hepatobiliary system6.45e-0822
foregut-midgut junction6.45e-0822
hepatic diverticulum6.45e-0822
liver primordium6.45e-0822
septum transversum6.45e-0822
liver bud6.45e-0822
subdivision of trunk9.11e-0866
exocrine gland1.74e-0725
exocrine system1.74e-0725
digestive tract diverticulum1.81e-0723
sac1.81e-0723
trunk mesenchyme4.14e-0745


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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