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Coexpression cluster:C68

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Full id: C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma



Phase1 CAGE Peaks

Hg19::chr10:104161779..104161825,+p@chr10:104161779..104161825
+
Hg19::chr10:118463443..118463444,+p@chr10:118463443..118463444
+
Hg19::chr10:125623630..125623648,-p@chr10:125623630..125623648
-
Hg19::chr10:125623682..125623706,-p@chr10:125623682..125623706
-
Hg19::chr10:131344593..131344605,+p@chr10:131344593..131344605
+
Hg19::chr10:131488786..131488807,+p@chr10:131488786..131488807
+
Hg19::chr10:134227398..134227410,+p@chr10:134227398..134227410
+
Hg19::chr10:3668321..3668343,-p@chr10:3668321..3668343
-
Hg19::chr10:50818183..50818194,-p@chr10:50818183..50818194
-
Hg19::chr10:9060826..9060835,-p@chr10:9060826..9060835
-
Hg19::chr10:9060848..9060862,-p@chr10:9060848..9060862
-
Hg19::chr10:9060881..9060893,-p@chr10:9060881..9060893
-
Hg19::chr11:111794915..111794928,+p6@C11orf52
Hg19::chr11:111794952..111794962,+p8@C11orf52
Hg19::chr11:119994605..119994622,-p5@TRIM29
Hg19::chr11:126237268..126237276,+p@chr11:126237268..126237276
+
Hg19::chr11:1946293..1946319,+p11@TNNT3
Hg19::chr11:1949070..1949079,+p@chr11:1949070..1949079
+
Hg19::chr11:1949831..1949837,+p@chr11:1949831..1949837
+
Hg19::chr11:1949886..1949907,+p@chr11:1949886..1949907
+
Hg19::chr11:1949928..1949937,+p@chr11:1949928..1949937
+
Hg19::chr11:1950008..1950019,+p@chr11:1950008..1950019
+
Hg19::chr11:1973029..1973054,+p@chr11:1973029..1973054
+
Hg19::chr11:2016402..2016414,+p2@RPSA
Hg19::chr11:2016477..2016504,-p4@BC106079
Hg19::chr11:2016588..2016600,-p6@BC106079
Hg19::chr11:2019065..2019078,-p2@H19
Hg19::chr11:21419826..21419837,-p@chr11:21419826..21419837
-
Hg19::chr11:2150347..2150380,+p3@BC104421
Hg19::chr11:2798772..2798822,+p3@KCNQ1
Hg19::chr11:5626359..5626406,+p8@TRIM6
Hg19::chr11:63330814..63330827,-p2@HRASLS2
Hg19::chr11:63330842..63330859,-p1@HRASLS2
Hg19::chr11:75921800..75921806,-p1@WNT11
Hg19::chr12:108238355..108238361,+p@chr12:108238355..108238361
+
Hg19::chr12:133149098..133149122,+p15@FBRSL1
Hg19::chr12:14967095..14967123,-p1@C12orf69
Hg19::chr12:14996355..14996441,-p1@ART4
Hg19::chr12:14996451..14996472,-p2@ART4
Hg19::chr12:14996486..14996500,-p3@ART4
Hg19::chr12:50643664..50643679,-p23@LIMA1
Hg19::chr12:50643695..50643708,-p11@LIMA1
Hg19::chr12:50643712..50643724,-p17@LIMA1
Hg19::chr12:52882275..52882287,-p@chr12:52882275..52882287
-
Hg19::chr12:52884676..52884706,-p13@KRT6A
Hg19::chr12:56912838..56912839,+p@chr12:56912838..56912839
+
Hg19::chr12:8975144..8975169,+p2@A2ML1
Hg19::chr13:114542805..114542816,-p@chr13:114542805..114542816
-
Hg19::chr13:41935939..41935949,+p9@NAA16
Hg19::chr13:43636277..43636292,+p@chr13:43636277..43636292
+
Hg19::chr13:43636294..43636306,+p@chr13:43636294..43636306
+
Hg19::chr13:43636307..43636322,+p@chr13:43636307..43636322
+
Hg19::chr13:43636336..43636347,+p@chr13:43636336..43636347
+
Hg19::chr13:43636356..43636378,+p@chr13:43636356..43636378
+
Hg19::chr13:68765236..68765243,+p@chr13:68765236..68765243
+
Hg19::chr13:76334660..76334671,+p23@LMO7
Hg19::chr13:76334680..76334689,+p36@LMO7
Hg19::chr13:76334693..76334717,+p8@LMO7
Hg19::chr13:76334722..76334764,+p6@LMO7
Hg19::chr13:76334766..76334785,+p10@LMO7
Hg19::chr13:78109818..78109850,+p1@SCEL
Hg19::chr13:78184183..78184187,+p@chr13:78184183..78184187
+
Hg19::chr14:24729194..24729195,-p32@TGM1
Hg19::chr14:24729251..24729267,-p9@TGM1
Hg19::chr14:44016947..44016965,-p@chr14:44016947..44016965
-
Hg19::chr14:61995499..61995522,+p2@ENST00000556347
Hg19::chr14:62063872..62063902,-p@chr14:62063872..62063902
-
Hg19::chr14:64559863..64559877,+p@chr14:64559863..64559877
+
Hg19::chr14:64559897..64559910,+p@chr14:64559897..64559910
+
Hg19::chr14:64559917..64559954,+p@chr14:64559917..64559954
+
Hg19::chr14:75735999..75736014,-p1@ENST00000553510
Hg19::chr14:89883174..89883177,+p@chr14:89883174..89883177
+
Hg19::chr15:52121893..52121929,+p2@TMOD3
Hg19::chr15:68344995..68345013,+p@chr15:68344995..68345013
+
Hg19::chr15:78280795..78280834,+p@chr15:78280795..78280834
+
Hg19::chr16:61723408..61723409,+p@chr16:61723408..61723409
+
Hg19::chr16:67427389..67427408,-p1@TPPP3
Hg19::chr16:75845678..75845682,+p@chr16:75845678..75845682
+
Hg19::chr16:810728..810749,+p2@MSLN
Hg19::chr16:810842..810849,+p13@MSLN
Hg19::chr16:810882..810893,+p7@MSLN
Hg19::chr16:810919..810935,+p4@MSLN
Hg19::chr16:810945..810956,+p8@MSLN
Hg19::chr16:810991..810994,+p11@MSLN
Hg19::chr16:811041..811057,+p3@MSLN
Hg19::chr16:811064..811071,+p6@MSLN
Hg19::chr16:811073..811139,+p1@MSLN
Hg19::chr16:812227..812239,+p10@MSLN
Hg19::chr16:812453..812461,+p20@MSLN
Hg19::chr16:812506..812518,+p5@MSLN
Hg19::chr16:844123..844154,+p@chr16:844123..844154
+
Hg19::chr16:84889089..84889095,-p@chr16:84889089..84889095
-
Hg19::chr17:18281087..18281095,+p1@EVPLL
Hg19::chr17:2278441..2278454,+p13@SGSM2
Hg19::chr17:2278481..2278491,+p14@SGSM2
Hg19::chr17:38857487..38857494,-p@chr17:38857487..38857494
-
Hg19::chr17:38858136..38858142,-p@chr17:38858136..38858142
-
Hg19::chr17:38859399..38859408,-p@chr17:38859399..38859408
-
Hg19::chr17:38859418..38859423,-p@chr17:38859418..38859423
-
Hg19::chr17:38859450..38859466,-p@chr17:38859450..38859466
-
Hg19::chr17:38859468..38859474,-p@chr17:38859468..38859474
-
Hg19::chr17:38859483..38859500,-p2@KRT24
Hg19::chr17:38859520..38859529,-p3@KRT24
Hg19::chr17:38859618..38859626,-p7@KRT24
Hg19::chr17:38859632..38859640,-p8@KRT24
Hg19::chr17:38859653..38859658,-p10@KRT24
Hg19::chr17:38859668..38859679,-p4@KRT24
Hg19::chr17:38859704..38859712,-p5@KRT24
Hg19::chr17:38859741..38859749,-p6@KRT24
Hg19::chr17:38859996..38860010,-p1@KRT24
Hg19::chr17:38875358..38875392,-p1@KRT223P
Hg19::chr17:38875395..38875406,-p2@KRT223P
Hg19::chr17:48185357..48185403,+p13@PDK2
Hg19::chr17:54489919..54489960,+p@chr17:54489919..54489960
+
Hg19::chr17:63217193..63217211,+p@chr17:63217193..63217211
+
Hg19::chr17:73636134..73636150,+p5@C17orf109
Hg19::chr17:73636184..73636203,+p2@C17orf109
Hg19::chr17:73636235..73636249,+p3@C17orf109
Hg19::chr17:74049688..74049708,-p6@SRP68
Hg19::chr17:74049720..74049747,-p3@SRP68
Hg19::chr17:78682708..78682713,+p@chr17:78682708..78682713
+
Hg19::chr17:78682732..78682739,+p@chr17:78682732..78682739
+
Hg19::chr17:78682759..78682766,+p@chr17:78682759..78682766
+
Hg19::chr17:79304150..79304190,-p1@TMEM105
Hg19::chr18:28622894..28622905,-p7@DSC3
Hg19::chr18:28622907..28622942,-p4@DSC3
Hg19::chr18:28898087..28898106,+p2@DSG1
Hg19::chr18:28898107..28898130,+p1@DSG1
Hg19::chr18:46147872..46147919,+p4@CTIF
Hg19::chr18:61442747..61442758,+p6@SERPINB7
Hg19::chr18:61442767..61442774,+p9@SERPINB7
Hg19::chr18:61442787..61442814,+p5@SERPINB7
Hg19::chr18:6286777..6286797,+p@chr18:6286777..6286797
+
Hg19::chr18:72618246..72618294,-p@chr18:72618246..72618294
-
Hg19::chr19:13955108..13955132,-p@chr19:13955108..13955132
-
Hg19::chr19:15065060..15065084,-p@chr19:15065060..15065084
-
Hg19::chr19:15065111..15065171,-p@chr19:15065111..15065171
-
Hg19::chr19:36594000..36594048,+p1@BC128417
Hg19::chr19:45848386..45848393,+p6@KLC3
Hg19::chr19:50708695..50708753,+p@chr19:50708695..50708753
+
Hg19::chr19:50708757..50708769,+p@chr19:50708757..50708769
+
Hg19::chr19:50709279..50709300,+p@chr19:50709279..50709300
+
Hg19::chr19:9047470..9047482,-p@chr19:9047470..9047482
-
Hg19::chr19:9049725..9049733,-p@chr19:9049725..9049733
-
Hg19::chr19:9057024..9057060,-p@chr19:9057024..9057060
-
Hg19::chr19:9057551..9057553,-p1@MUC16
Hg19::chr19:9060169..9060183,-p@chr19:9060169..9060183
-
Hg19::chr19:9066668..9066678,-p@chr19:9066668..9066678
-
Hg19::chr19:9067461..9067493,-p@chr19:9067461..9067493
-
Hg19::chr19:9072255..9072266,-p@chr19:9072255..9072266
-
Hg19::chr19:9073298..9073307,-p@chr19:9073298..9073307
-
Hg19::chr19:9074395..9074399,-p@chr19:9074395..9074399
-
Hg19::chr19:9074760..9074767,-p@chr19:9074760..9074767
-
Hg19::chr19:9077370..9077388,-p@chr19:9077370..9077388
-
Hg19::chr19:9077861..9077865,-p@chr19:9077861..9077865
-
Hg19::chr19:9087492..9087495,-p@chr19:9087492..9087495
-
Hg19::chr19:9121076..9121094,-p@chr19:9121076..9121094
-
Hg19::chr1:100435986..100436014,+p4@SLC35A3
Hg19::chr1:100436065..100436078,+p5@SLC35A3
Hg19::chr1:100436120..100436134,+p6@SLC35A3
Hg19::chr1:116151642..116151644,+p@chr1:116151642..116151644
+
Hg19::chr1:151009035..151009050,+p2@BNIPL
Hg19::chr1:1567372..1567385,+p9@MMP23B
Hg19::chr1:202936357..202936392,-p1@CYB5R1
Hg19::chr1:204257417..204257469,-p@chr1:204257417..204257469
-
Hg19::chr1:248612526..248612531,+p@chr1:248612526..248612531
+
Hg19::chr1:43534539..43534544,+p@chr1:43534539..43534544
+
Hg19::chr1:43537118..43537143,+p@chr1:43537118..43537143
+
Hg19::chr20:16643520..16643522,+p@chr20:16643520..16643522
+
Hg19::chr20:42817571..42817591,-p@chr20:42817571..42817591
-
Hg19::chr20:51740243..51740246,+p@chr20:51740243..51740246
+
Hg19::chr20:61287795..61287809,+p4@SLCO4A1
Hg19::chr21:39607434..39607458,+p@chr21:39607434..39607458
+
Hg19::chr2:150017284..150017314,+p@chr2:150017284..150017314
+
Hg19::chr2:16243185..16243186,-p@chr2:16243185..16243186
-
Hg19::chr2:174983006..174983046,-p@chr2:174983006..174983046
-
Hg19::chr2:28853443..28853454,+p8@PLB1
Hg19::chr2:28853455..28853476,+p@chr2:28853455..28853476
+
Hg19::chr2:72375473..72375477,-p3@CYP26B1
Hg19::chr3:118892362..118892373,+p2@UPK1B
Hg19::chr3:118892394..118892403,+p3@UPK1B
Hg19::chr3:118892411..118892453,+p1@UPK1B
Hg19::chr3:118906737..118906751,+p@chr3:118906737..118906751
+
Hg19::chr3:118917948..118917952,+p@chr3:118917948..118917952
+
Hg19::chr3:123512732..123512741,-p74@MYLK
Hg19::chr3:132601146..132601156,-p@chr3:132601146..132601156
-
Hg19::chr3:174581572..174581585,+p6@NAALADL2
Hg19::chr3:174581600..174581648,+p5@NAALADL2
Hg19::chr3:188889706..188889735,+p2@TPRG1
Hg19::chr3:38032216..38032225,+p11@VILL
Hg19::chr3:56658899..56658908,-p@chr3:56658899..56658908
-
Hg19::chr4:120222077..120222102,+p@chr4:120222077..120222102
+
Hg19::chr4:143395415..143395436,-p26@INPP4B
Hg19::chr4:146704036..146704062,-p@chr4:146704036..146704062
-
Hg19::chr4:152117165..152117168,+p@chr4:152117165..152117168
+
Hg19::chr4:28216602..28216605,+p@chr4:28216602..28216605
+
Hg19::chr4:89514497..89514512,+p5@HERC3
Hg19::chr4:89514516..89514528,+p7@HERC3
Hg19::chr5:180688614..180688616,+p@chr5:180688614..180688616
+
Hg19::chr5:58489727..58489747,-p@chr5:58489727..58489747
-
Hg19::chr5:58489830..58489860,-p@chr5:58489830..58489860
-
Hg19::chr5:59573885..59573903,-p@chr5:59573885..59573903
-
Hg19::chr6:12161805..12161817,+p@chr6:12161805..12161817
+
Hg19::chr6:12161831..12161855,+p@chr6:12161831..12161855
+
Hg19::chr6:143081372..143081388,-p@chr6:143081372..143081388
-
Hg19::chr6:148604511..148604542,-p1@ENST00000423268
Hg19::chr6:1961197..1961206,-p15@GMDS
Hg19::chr6:24877326..24877328,-p35@FAM65B
Hg19::chr6:24877453..24877462,-p14@FAM65B
Hg19::chr6:24877490..24877505,-p9@FAM65B
Hg19::chr6:31083672..31083681,-p@chr6:31083672..31083681
-
Hg19::chr6:31083704..31083721,-p@chr6:31083704..31083721
-
Hg19::chr6:31083723..31083738,-p@chr6:31083723..31083738
-
Hg19::chr6:31083761..31083775,-p@chr6:31083761..31083775
-
Hg19::chr6:31083817..31083824,-p@chr6:31083817..31083824
-
Hg19::chr6:31083839..31083849,-p@chr6:31083839..31083849
-
Hg19::chr6:31083856..31083866,-p@chr6:31083856..31083866
-
Hg19::chr6:31084453..31084463,-p@chr6:31084453..31084463
-
Hg19::chr6:31084485..31084501,-p@chr6:31084485..31084501
-
Hg19::chr6:31085053..31085062,-p@chr6:31085053..31085062
-
Hg19::chr6:31085259..31085266,+p@chr6:31085259..31085266
+
Hg19::chr6:31088214..31088228,-p1@CDSN
Hg19::chr6:31686918..31686929,-p@chr6:31686918..31686929
-
Hg19::chr6:31686994..31687003,-p@chr6:31686994..31687003
-
Hg19::chr6:31687022..31687031,-p@chr6:31687022..31687031
-
Hg19::chr6:31687064..31687074,-p@chr6:31687064..31687074
-
Hg19::chr6:31688114..31688125,-p@chr6:31688114..31688125
-
Hg19::chr6:31688132..31688166,-p@chr6:31688132..31688166
-
Hg19::chr6:31689515..31689539,-p1@LY6G6C
Hg19::chr6:31697017..31697028,-p16@DDAH2
Hg19::chr6:32077019..32077030,-p4@TNXB
Hg19::chr6:32078154..32078167,-p@chr6:32078154..32078167
-
Hg19::chr6:56607138..56607143,-p@chr6:56607138..56607143
-
Hg19::chr6:56607178..56607207,-p@chr6:56607178..56607207
-
Hg19::chr6:56607215..56607225,-p@chr6:56607215..56607225
-
Hg19::chr6:56607229..56607240,-p@chr6:56607229..56607240
-
Hg19::chr7:100660540..100660573,+p1@MUC12
Hg19::chr7:116859072..116859089,+p8@ST7
Hg19::chr7:29152509..29152558,-p3@CPVL
Hg19::chr7:44264901..44264942,-p@chr7:44264901..44264942
-
Hg19::chr7:44265492..44265523,-p3@CAMK2B
Hg19::chr7:46385081..46385087,+p@chr7:46385081..46385087
+
Hg19::chr7:46608875..46608912,+p@chr7:46608875..46608912
+
Hg19::chr7:7310870..7310881,+p3@ENST00000447039
Hg19::chr7:7310907..7310916,+p4@ENST00000447039
Hg19::chr7:7310935..7310949,+p2@ENST00000447039
Hg19::chr7:7311029..7311044,+p1@ENST00000447039
Hg19::chr7:871641..871677,+p3@SUN1
Hg19::chr9:117665394..117665419,+p@chr9:117665394..117665419
+
Hg19::chr9:34233917..34233922,+p@chr9:34233917..34233922
+
Hg19::chr9:43725488..43725489,+p@chr9:43725488..43725489
+
Hg19::chr9:92033169..92033215,-p3@SEMA4D
Hg19::chr9:92049035..92049042,+p@chr9:92049035..92049042
+
Hg19::chr9:92058365..92058396,-p@chr9:92058365..92058396
-
Hg19::chrX:104568883..104568906,+p@chrX:104568883..104568906
+
Hg19::chrX:21444376..21444380,+p@chrX:21444376..21444380
+
Hg19::chrX:21444387..21444409,+p@chrX:21444387..21444409
+
Hg19::chrX:48374277..48374289,+p@chrX:48374277..48374289
+
Hg19::chrX:80518145..80518157,+p@chrX:80518145..80518157
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

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