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MCL coexpression mm9:674

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Phase1 CAGE Peaks

 Short description
Mm9::chr15:89165417..89165448,+p2@Miox
Mm9::chr16:22899188..22899189,-p@chr16:22899188..22899189
-
Mm9::chr1:174825056..174825089,-p1@Apcs
Mm9::chr1:174825099..174825111,-p6@Apcs
Mm9::chr1:174825114..174825134,-p4@Apcs
Mm9::chr1:174825139..174825146,-p5@Apcs
Mm9::chr1:174825156..174825175,-p3@Apcs
Mm9::chr3:82846342..82846366,+p@chr3:82846342..82846366
+
Mm9::chr3:82847141..82847172,+p@chr3:82847141..82847172
+
Mm9::chr7:107699259..107699268,-p@chr7:107699259..107699268
-
Mm9::chr8:23674552..23674588,+p@chr8:23674552..23674588
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0050113inositol oxygenase activity0.00219142058839643
GO:0004033aldo-keto reductase activity0.0164293510171321
GO:0016701oxidoreductase activity, acting on single donors with incorporation of molecular oxygen0.0360940550224503
GO:0016651oxidoreductase activity, acting on NADH or NADPH0.0360940550224503
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor0.0433226793136719
GO:0016614oxidoreductase activity, acting on CH-OH group of donors0.0433226793136719



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
liver3.71e-2722
epithelial sac3.71e-2722
digestive gland3.71e-2722
epithelium of foregut-midgut junction3.71e-2722
anatomical boundary3.71e-2722
hepatobiliary system3.71e-2722
foregut-midgut junction3.71e-2722
hepatic diverticulum3.71e-2722
liver primordium3.71e-2722
septum transversum3.71e-2722
liver bud3.71e-2722
digestive tract diverticulum1.15e-2523
sac1.15e-2523
exocrine gland4.83e-2325
exocrine system4.83e-2325
abdomen element2.33e-1349
abdominal segment element2.33e-1349
abdominal segment of trunk2.33e-1349
abdomen2.33e-1349
trunk mesenchyme4.90e-1345
mesenchyme2.98e-0961
entire embryonic mesenchyme2.98e-0961
epithelial tube3.71e-0947
endocrine gland4.92e-0860
subdivision of trunk5.20e-0866
gut epithelium5.81e-0755
gland6.44e-0765
endocrine system7.35e-0772
trunk region element9.32e-0779


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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