Personal tools

UBERON:0004339

From FANTOM5_SSTAR

Revision as of 17:04, 26 June 2012 by Autoedit (talk | contribs) (Created page with "{{UBERON |id=UBERON:0004339 |name=calvarium |namespace= |def="the upper domelike portion of the skull[MP]. the upper part of the cranium and surrounds the cranial cavity c...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:calvarium
Definition:"the upper domelike portion of the skull[MP]. the upper part of the cranium and surrounds the cranial cavity containing the brain. It is formed from frontal, parietal, temporal and occipital bones." [MP:0000076, Wikipedia:Calvaria_(skull)]
Xrefs:
links:

EHDAA2:0002167
EHDAA:9538
EMAPA:18016
FMA:52800
ncithesaurus:Skullcap
SCTID:140592008
VHOG:0000331

ZFA:0005606
Synonyms: "calva" EXACT [FMA:52800]
"calvaria" EXACT PLURAL [ZFA:0005606]
"skullcap" RELATED [ZFA:0005606]
"vault of skull" EXACT [EHDAA2:0002167]
Comments:calvaria part_of neurocranium in FMA, but no definition. MP class now merged. Gray's Anatomy's list includes the Ethmoid and Sphenoid bone in the Calvaria. Some books state that calvaria consists of just the frontal bone, parietal bone, temporal bone, and occipital bone. Note vault may not be precisely equivalent to calvaria

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004765(skeletal element)



Children

part of:UBERON:0001678 (temporal bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004339 (calvarium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp10@Sec11a
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr2:170417150..170417155, -
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp3@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp1@Otog
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp2@Strc
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp9@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr13:37195838..37195870, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr11:11599532..11599539, -
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp2@Otof
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_a0c1b949a061bbcbc3b9b3e2beee00ccp@chr12:109905468..109905474, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004339&oldid=1835987"