MCL coexpression mm9:87

Phase1 CAGE Peaks

	Short description
Mm9::chr10:126497219..126497262,-	p1@March9
Mm9::chr10:19076194..19076197,+	p2@Olig3
Mm9::chr10:44786879..44786894,+	p3@Prep
Mm9::chr10:79076757..79076800,-	p1@C2cd4c
Mm9::chr10:85061471..85061500,+	p@chr10:85061471..85061500 +
Mm9::chr11:104092756..104092767,+	p2@Mapt
Mm9::chr11:104143685..104143706,+	p5@Mapt
Mm9::chr11:104163705..104163726,-	p@chr11:104163705..104163726 -
Mm9::chr11:104167954..104167968,+	p@chr11:104167954..104167968 +
Mm9::chr11:104189552..104189556,-	p@chr11:104189552..104189556 -
Mm9::chr11:120582766..120582850,+	p1@Rac3
Mm9::chr11:120582857..120582878,+	p2@Rac3
Mm9::chr11:45758412..45758462,-	p1@Lsm11
Mm9::chr12:106575132..106575180,+	p1@ENSMUST00000138649 p1@uc007oyg.1
Mm9::chr12:110306566..110306578,-	p4@Begain
Mm9::chr12:47799607..47799610,-	p@chr12:47799607..47799610 -
Mm9::chr12:47885301..47885305,-	p@chr12:47885301..47885305 -
Mm9::chr12:47919065..47919083,-	p@chr12:47919065..47919083 -
Mm9::chr12:47919095..47919116,-	p@chr12:47919095..47919116 -
Mm9::chr12:47919328..47919344,-	p@chr12:47919328..47919344 -
Mm9::chr12:47919483..47919504,-	p@chr12:47919483..47919504 -
Mm9::chr12:47919736..47919775,-	p3@Nova1
Mm9::chr12:47919913..47919924,-	p5@Nova1
Mm9::chr12:47919969..47919991,-	p2@Nova1
Mm9::chr12:47920007..47920013,-	p7@Nova1
Mm9::chr12:47920030..47920045,-	p4@Nova1
Mm9::chr12:47920074..47920083,-	p6@Nova1
Mm9::chr12:47920175..47920191,-	p1@Nova1
Mm9::chr12:47920231..47920236,-	p8@Nova1
Mm9::chr13:104899656..104899699,-	p2@Nln
Mm9::chr13:111070862..111070879,-	p6@Rab3c
Mm9::chr13:111071199..111071245,-	p2@Rab3c
Mm9::chr13:95645555..95645566,+	p3@Otp
Mm9::chr14:119276115..119276118,-	p@chr14:119276115..119276118 -
Mm9::chr14:119324684..119324701,-	p1@Dzip1
Mm9::chr14:26427427..26427439,+	p22@Zmiz1
Mm9::chr14:55496369..55496389,-	p2@Ppp1r3e
Mm9::chr14:55735781..55735817,-	p9@Jph4
Mm9::chr14:66044006..66044025,-	p1@Pnoc
Mm9::chr14:66044290..66044303,-	p2@Pnoc
Mm9::chr14:67433858..67433880,-	p@chr14:67433858..67433880 -
Mm9::chr14:67448813..67448819,-	p@chr14:67448813..67448819 -
Mm9::chr14:67453139..67453158,-	p@chr14:67453139..67453158 -
Mm9::chr14:67487756..67487785,-	p5@Dpysl2
Mm9::chr14:67529728..67529798,-	p@chr14:67529728..67529798 -
Mm9::chr15:101676842..101676853,-	p@chr15:101676842..101676853 -
Mm9::chr15:75397327..75397339,-	p6@Ly6h
Mm9::chr15:75397341..75397349,-	p8@Ly6h
Mm9::chr15:75397445..75397483,-	p3@Ly6h
Mm9::chr15:99500758..99500827,+	p1@Accn2
Mm9::chr15:99500834..99500850,+	p5@Accn2
Mm9::chr16:31428979..31428988,+	p7@Bdh1
Mm9::chr16:42292251..42292266,-	p@chr16:42292251..42292266 -
Mm9::chr16:42340697..42340704,-	p4@Gap43
Mm9::chr17:37183500..37183545,+	p4@Gabbr1
Mm9::chr17:56110012..56110026,+	p3@Shd
Mm9::chr18:33624019..33624040,-	p9@D0H4S114
Mm9::chr18:37975044..37975091,+	p6@Pcdhga11 p6@Pcdhga12 p6@Pcdhga3 p6@Pcdhga8 p6@Pcdhga9 p6@Pcdhgb6 p6@Pcdhgc3 p6@Pcdhgc4 p6@Pcdhgc5
Mm9::chr18:37975098..37975121,+	p10@Pcdhga11 p10@Pcdhga12 p10@Pcdhga3 p10@Pcdhga8 p10@Pcdhga9 p10@Pcdhgb6 p10@Pcdhgc3 p10@Pcdhgc4 p10@Pcdhgc5
Mm9::chr18:62071437..62071508,-	p1@Ablim3
Mm9::chr18:86880274..86880286,+	p4@Cbln2
Mm9::chr18:86880451..86880455,+	p1@Cbln2
Mm9::chr18:86881100..86881132,+	p2@Cbln2
Mm9::chr19:8913640..8913651,-	p2@Gng3
Mm9::chr1:129574459..129574474,-	p3@Tmem163
Mm9::chr1:129574500..129574533,-	p2@Tmem163
Mm9::chr1:23768815..23768838,+	p2@B3gat2
Mm9::chr1:23768842..23768857,+	p1@B3gat2
Mm9::chr1:84692581..84692590,-	p14@Dner
Mm9::chr1:84692602..84692613,-	p12@Dner
Mm9::chr1:84692822..84692836,-	p10@Dner
Mm9::chr1:94745160..94745194,+	p@chr1:94745160..94745194 +
Mm9::chr1:94745202..94745249,+	p@chr1:94745202..94745249 +
Mm9::chr1:94745285..94745304,+	p@chr1:94745285..94745304 +
Mm9::chr2:125499419..125499430,+	p@chr2:125499419..125499430 +
Mm9::chr2:156246852..156246859,+	p11@Epb4.1l1
Mm9::chr2:156246865..156246879,+	p8@Epb4.1l1
Mm9::chr2:156246898..156246910,+	p9@Epb4.1l1
Mm9::chr2:157740396..157740407,+	p2@Vstm2l
Mm9::chr2:25097716..25097727,+	p4@Rnf208
Mm9::chr3:148652676..148652715,-	p7@Lphn2
Mm9::chr3:4797337..4797364,+	p@chr3:4797337..4797364 +
Mm9::chr3:88004177..88004191,+	p3@ENSMUST00000167043
Mm9::chr3:88004192..88004201,+	p8@ENSMUST00000167043
Mm9::chr3:88004207..88004240,+	p2@ENSMUST00000167043
Mm9::chr3:88004245..88004270,+	p1@ENSMUST00000167043
Mm9::chr3:89263198..89263211,+	p5@Pmvk
Mm9::chr3:95023478..95023490,-	p@chr3:95023478..95023490 -
Mm9::chr4:114806709..114806726,-	p3@Cyp4x1
Mm9::chr4:129118044..129118067,-	p1@Zbtb8b
Mm9::chr4:130348049..130348063,+	p6@Sdc3
Mm9::chr4:130348222..130348235,+	p9@Sdc3
Mm9::chr4:130348395..130348423,+	p2@Sdc3
Mm9::chr4:140924031..140924094,+	p1@Fam131c
Mm9::chr4:41587211..41587266,-	p3@Enho
Mm9::chr4:49072311..49072337,+	p3@E130309F12Rik
Mm9::chr4:76096494..76096519,-	p@chr4:76096494..76096519 -
Mm9::chr4:76096788..76096815,+	p@chr4:76096788..76096815 +
Mm9::chr4:91030569..91030573,-	p@chr4:91030569..91030573 -
Mm9::chr5:137463627..137463638,-	p7@Znhit1
Mm9::chr5:151062473..151062486,+	p11@Fry
Mm9::chr5:37633264..37633320,+	p2@Crmp1
Mm9::chr5:37633325..37633330,+	p3@Crmp1
Mm9::chr5:38108433..38108444,-	p2@Stk32b
Mm9::chr6:122436375..122436444,-	p3@Rimklb
Mm9::chr6:138375213..138375222,-	p19@Lmo3
Mm9::chr7:126328062..126328086,-	p2@Gpr139
Mm9::chr7:126328112..126328133,-	p3@Gpr139
Mm9::chr7:135831964..135831986,+	p1@Inpp5f
Mm9::chr7:135831994..135832014,+	p3@Inpp5f
Mm9::chr7:135832399..135832413,+	p6@Inpp5f
Mm9::chr7:135832680..135832690,+	p@chr7:135832680..135832690 +
Mm9::chr7:145589387..145589469,-	p1@Tcerg1l
Mm9::chr7:20437343..20437371,+	p1@Gm19345
Mm9::chr7:20437373..20437394,+	p2@Gm19345
Mm9::chr7:20437403..20437410,+	p3@Gm19345
Mm9::chr7:30089029..30089032,+	p10@Dpf1
Mm9::chr7:31016724..31016735,-	p2@Tbcb
Mm9::chr7:53125826..53125843,+	p@chr7:53125826..53125843 +
Mm9::chr7:53126334..53126356,-	p3@Grin2d
Mm9::chr7:54387991..54388007,-	p10@Ptpn5
Mm9::chr7:54388095..54388120,-	p3@Ptpn5
Mm9::chr7:54388961..54388999,-	p4@Ptpn5
Mm9::chr7:54389015..54389026,-	p11@Ptpn5
Mm9::chr7:58877055..58877073,+	p13@Slc17a6
Mm9::chr7:58877539..58877553,+	p4@Slc17a6
Mm9::chr7:80554269..80554280,+	p@chr7:80554269..80554280 +
Mm9::chr7:87484876..87484896,-	p@chr7:87484876..87484896 -
Mm9::chr7:89319756..89319761,+	p4@Sh3gl3
Mm9::chr8:127354916..127354928,+	p@chr8:127354916..127354928 +
Mm9::chr8:34496088..34496153,+	p@chr8:34496088..34496153 +
Mm9::chr8:35953722..35953773,-	p@chr8:35953722..35953773 -
Mm9::chr8:73895532..73895543,+	p3@Ocel1
Mm9::chr8:98201645..98201708,+	p2@Ndrg4
Mm9::chr9:106355745..106355766,+	p7@Pcbp4
Mm9::chr9:45198876..45198891,+	p@chr9:45198876..45198891 +
Mm9::chr9:49312416..49312430,-	p@chr9:49312416..49312430 -
Mm9::chr9:49376574..49376610,-	p@chr9:49376574..49376610 -
Mm9::chr9:58670746..58670773,+	p@chr9:58670746..58670773 +
Mm9::chr9:64949111..64949149,+	p2@Igdcc4
Mm9::chrX:140098908..140098942,+	p1@Pak3
Mm9::chrX:149079031..149079087,-	p3@Shroom2
Mm9::chrX:161765029..161765057,-	p3@Glra2
Mm9::chrX:161765308..161765353,-	p1@Glra2
Mm9::chrX:45872422..45872458,+	p3@Rab33a

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0043005	neuron projection	6.5438753596911e-05
GO:0030425	dendrite	0.00561725477027507
GO:0030424	axon	0.0103677147115197
GO:0022834	ligand-gated channel activity	0.0194470630245126
GO:0015276	ligand-gated ion channel activity	0.0194470630245126
GO:0042995	cell projection	0.0194790752482849

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

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Cell Type

Ontology term	p-value	n

Uber Anatomy

Ontology term	p-value	n

Disease

Ontology term	p-value	n

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
{{{tfbs_overrepresentation_jaspar}}}