Personal tools

MCL coexpression mm9:87

From FANTOM5_SSTAR

Jump to: navigation, search


Phase1 CAGE Peaks

  Short description
Mm9::chr10:126497219..126497262,- p1@March9
Mm9::chr10:19076194..19076197,+ p2@Olig3
Mm9::chr10:44786879..44786894,+ p3@Prep
Mm9::chr10:79076757..79076800,- p1@C2cd4c
Mm9::chr10:85061471..85061500,+ p@chr10:85061471..85061500
+
Mm9::chr11:104092756..104092767,+ p2@Mapt
Mm9::chr11:104143685..104143706,+ p5@Mapt
Mm9::chr11:104163705..104163726,- p@chr11:104163705..104163726
-
Mm9::chr11:104167954..104167968,+ p@chr11:104167954..104167968
+
Mm9::chr11:104189552..104189556,- p@chr11:104189552..104189556
-
Mm9::chr11:120582766..120582850,+ p1@Rac3
Mm9::chr11:120582857..120582878,+ p2@Rac3
Mm9::chr11:45758412..45758462,- p1@Lsm11
Mm9::chr12:106575132..106575180,+ p1@ENSMUST00000138649
p1@uc007oyg.1
Mm9::chr12:110306566..110306578,- p4@Begain
Mm9::chr12:47799607..47799610,- -
p@chr12:47799607..47799610
Mm9::chr12:47885301..47885305,- p@chr12:47885301..47885305
-
Mm9::chr12:47919065..47919083,- p@chr12:47919065..47919083
-
Mm9::chr12:47919095..47919116,- p@chr12:47919095..47919116
-
Mm9::chr12:47919328..47919344,- p@chr12:47919328..47919344
-
Mm9::chr12:47919483..47919504,- p@chr12:47919483..47919504
-
Mm9::chr12:47919736..47919775,- p3@Nova1
Mm9::chr12:47919913..47919924,- p5@Nova1
Mm9::chr12:47919969..47919991,- p2@Nova1
Mm9::chr12:47920007..47920013,- p7@Nova1
Mm9::chr12:47920030..47920045,- p4@Nova1
Mm9::chr12:47920074..47920083,- p6@Nova1
Mm9::chr12:47920175..47920191,- p1@Nova1
Mm9::chr12:47920231..47920236,- p8@Nova1
Mm9::chr13:104899656..104899699,- p2@Nln
Mm9::chr13:111070862..111070879,- p6@Rab3c
Mm9::chr13:111071199..111071245,- p2@Rab3c
Mm9::chr13:95645555..95645566,+ p3@Otp
Mm9::chr14:119276115..119276118,- p@chr14:119276115..119276118
-
Mm9::chr14:119324684..119324701,- p1@Dzip1
Mm9::chr14:26427427..26427439,+ p22@Zmiz1
Mm9::chr14:55496369..55496389,- p2@Ppp1r3e
Mm9::chr14:55735781..55735817,- p9@Jph4
Mm9::chr14:66044006..66044025,- p1@Pnoc
Mm9::chr14:66044290..66044303,- p2@Pnoc
Mm9::chr14:67433858..67433880,- p@chr14:67433858..67433880
-
Mm9::chr14:67448813..67448819,- p@chr14:67448813..67448819
-
Mm9::chr14:67453139..67453158,- -
p@chr14:67453139..67453158
Mm9::chr14:67487756..67487785,- p5@Dpysl2
Mm9::chr14:67529728..67529798,- p@chr14:67529728..67529798
-
Mm9::chr15:101676842..101676853,- p@chr15:101676842..101676853
-
Mm9::chr15:75397327..75397339,- p6@Ly6h
Mm9::chr15:75397341..75397349,- p8@Ly6h
Mm9::chr15:75397445..75397483,- p3@Ly6h
Mm9::chr15:99500758..99500827,+ p1@Accn2
Mm9::chr15:99500834..99500850,+ p5@Accn2
Mm9::chr16:31428979..31428988,+ p7@Bdh1
Mm9::chr16:42292251..42292266,- p@chr16:42292251..42292266
-
Mm9::chr16:42340697..42340704,- p4@Gap43
Mm9::chr17:37183500..37183545,+ p4@Gabbr1
Mm9::chr17:56110012..56110026,+ p3@Shd
Mm9::chr18:33624019..33624040,- p9@D0H4S114
Mm9::chr18:37975044..37975091,+ p6@Pcdhga11
p6@Pcdhga12
p6@Pcdhga3
p6@Pcdhga8
p6@Pcdhga9
p6@Pcdhgb6
p6@Pcdhgc3
p6@Pcdhgc4
p6@Pcdhgc5
Mm9::chr18:37975098..37975121,+ p10@Pcdhga11
p10@Pcdhga12
p10@Pcdhga3
p10@Pcdhga8
p10@Pcdhga9
p10@Pcdhgb6
p10@Pcdhgc3
p10@Pcdhgc4
p10@Pcdhgc5
Mm9::chr18:62071437..62071508,- p1@Ablim3
Mm9::chr18:86880274..86880286,+ p4@Cbln2
Mm9::chr18:86880451..86880455,+ p1@Cbln2
Mm9::chr18:86881100..86881132,+ p2@Cbln2
Mm9::chr19:8913640..8913651,- p2@Gng3
Mm9::chr1:129574459..129574474,- p3@Tmem163
Mm9::chr1:129574500..129574533,- p2@Tmem163
Mm9::chr1:23768815..23768838,+ p2@B3gat2
Mm9::chr1:23768842..23768857,+ p1@B3gat2
Mm9::chr1:84692581..84692590,- p14@Dner
Mm9::chr1:84692602..84692613,- p12@Dner
Mm9::chr1:84692822..84692836,- p10@Dner
Mm9::chr1:94745160..94745194,+ p@chr1:94745160..94745194
+
Mm9::chr1:94745202..94745249,+ p@chr1:94745202..94745249
+
Mm9::chr1:94745285..94745304,+ p@chr1:94745285..94745304
+
Mm9::chr2:125499419..125499430,+ p@chr2:125499419..125499430
+
Mm9::chr2:156246852..156246859,+ p11@Epb4.1l1
Mm9::chr2:156246865..156246879,+ p8@Epb4.1l1
Mm9::chr2:156246898..156246910,+ p9@Epb4.1l1
Mm9::chr2:157740396..157740407,+ p2@Vstm2l
Mm9::chr2:25097716..25097727,+ p4@Rnf208
Mm9::chr3:148652676..148652715,- p7@Lphn2
Mm9::chr3:4797337..4797364,+ p@chr3:4797337..4797364
+
Mm9::chr3:88004177..88004191,+ p3@ENSMUST00000167043
Mm9::chr3:88004192..88004201,+ p8@ENSMUST00000167043
Mm9::chr3:88004207..88004240,+ p2@ENSMUST00000167043
Mm9::chr3:88004245..88004270,+ p1@ENSMUST00000167043
Mm9::chr3:89263198..89263211,+ p5@Pmvk
Mm9::chr3:95023478..95023490,- p@chr3:95023478..95023490
-
Mm9::chr4:114806709..114806726,- p3@Cyp4x1
Mm9::chr4:129118044..129118067,- p1@Zbtb8b
Mm9::chr4:130348049..130348063,+ p6@Sdc3
Mm9::chr4:130348222..130348235,+ p9@Sdc3
Mm9::chr4:130348395..130348423,+ p2@Sdc3
Mm9::chr4:140924031..140924094,+ p1@Fam131c
Mm9::chr4:41587211..41587266,- p3@Enho
Mm9::chr4:49072311..49072337,+ p3@E130309F12Rik
Mm9::chr4:76096494..76096519,- p@chr4:76096494..76096519
-
Mm9::chr4:76096788..76096815,+ p@chr4:76096788..76096815
+
Mm9::chr4:91030569..91030573,- p@chr4:91030569..91030573
-
Mm9::chr5:137463627..137463638,- p7@Znhit1
Mm9::chr5:151062473..151062486,+ p11@Fry
Mm9::chr5:37633264..37633320,+ p2@Crmp1
Mm9::chr5:37633325..37633330,+ p3@Crmp1
Mm9::chr5:38108433..38108444,- p2@Stk32b
Mm9::chr6:122436375..122436444,- p3@Rimklb
Mm9::chr6:138375213..138375222,- p19@Lmo3
Mm9::chr7:126328062..126328086,- p2@Gpr139
Mm9::chr7:126328112..126328133,- p3@Gpr139
Mm9::chr7:135831964..135831986,+ p1@Inpp5f
Mm9::chr7:135831994..135832014,+ p3@Inpp5f
Mm9::chr7:135832399..135832413,+ p6@Inpp5f
Mm9::chr7:135832680..135832690,+ p@chr7:135832680..135832690
+
Mm9::chr7:145589387..145589469,- p1@Tcerg1l
Mm9::chr7:20437343..20437371,+ p1@Gm19345
Mm9::chr7:20437373..20437394,+ p2@Gm19345
Mm9::chr7:20437403..20437410,+ p3@Gm19345
Mm9::chr7:30089029..30089032,+ p10@Dpf1
Mm9::chr7:31016724..31016735,- p2@Tbcb
Mm9::chr7:53125826..53125843,+ p@chr7:53125826..53125843
+
Mm9::chr7:53126334..53126356,- p3@Grin2d
Mm9::chr7:54387991..54388007,- p10@Ptpn5
Mm9::chr7:54388095..54388120,- p3@Ptpn5
Mm9::chr7:54388961..54388999,- p4@Ptpn5
Mm9::chr7:54389015..54389026,- p11@Ptpn5
Mm9::chr7:58877055..58877073,+ p13@Slc17a6
Mm9::chr7:58877539..58877553,+ p4@Slc17a6
Mm9::chr7:80554269..80554280,+ p@chr7:80554269..80554280
+
Mm9::chr7:87484876..87484896,- p@chr7:87484876..87484896
-
Mm9::chr7:89319756..89319761,+ p4@Sh3gl3
Mm9::chr8:127354916..127354928,+ p@chr8:127354916..127354928
+
Mm9::chr8:34496088..34496153,+ p@chr8:34496088..34496153
+
Mm9::chr8:35953722..35953773,- p@chr8:35953722..35953773
-
Mm9::chr8:73895532..73895543,+ p3@Ocel1
Mm9::chr8:98201645..98201708,+ p2@Ndrg4
Mm9::chr9:106355745..106355766,+ p7@Pcbp4
Mm9::chr9:45198876..45198891,+ p@chr9:45198876..45198891
+
Mm9::chr9:49312416..49312430,- p@chr9:49312416..49312430
-
Mm9::chr9:49376574..49376610,- p@chr9:49376574..49376610
-
Mm9::chr9:58670746..58670773,+ p@chr9:58670746..58670773
+
Mm9::chr9:64949111..64949149,+ p2@Igdcc4
Mm9::chrX:140098908..140098942,+ p1@Pak3
Mm9::chrX:149079031..149079087,- p3@Shroom2
Mm9::chrX:161765029..161765057,- p3@Glra2
Mm9::chrX:161765308..161765353,- p1@Glra2
Mm9::chrX:45872422..45872458,+ p3@Rab33a


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


GO IDGO nameFDR corrected p-value
GO:0043005neuron projection6.5438753596911e-05
GO:0030425dendrite0.00561725477027507
GO:0030424axon0.0103677147115197
GO:0022834ligand-gated channel activity0.0194470630245126
GO:0015276ligand-gated ion channel activity0.0194470630245126
GO:0042995cell projection0.0194790752482849



Relative expression of the co-expression cluster over median
Analyst:





Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset

cell_data
uberon_data


Uber Anatomy
Ontology termp-valuen
regional part of nervous system5.16e-3354
neurectoderm2.08e-3264
neural plate2.08e-3264
presumptive neural plate2.08e-3264
neural tube7.14e-3152
neural rod7.14e-3152
future spinal cord7.14e-3152
neural keel7.14e-3152
central nervous system9.60e-3073
nervous system2.26e-2875
ecto-epithelium8.48e-2873
pre-chordal neural plate2.29e-2649
ectoderm-derived structure2.80e-2695
ectoderm2.80e-2695
presumptive ectoderm2.80e-2695
gray matter1.26e-2534
brain2.15e-2547
future brain2.15e-2547
regional part of brain1.16e-2446
anterior neural tube9.76e-2440
regional part of forebrain8.09e-2339
forebrain8.09e-2339
future forebrain8.09e-2339
structure with developmental contribution from neural crest8.81e-2192
brain grey matter2.62e-2029
regional part of telencephalon2.62e-2029
telencephalon2.62e-2029
cerebral cortex5.35e-1321
cerebral hemisphere5.35e-1321
pallium5.35e-1321
regional part of cerebral cortex3.61e-1017
basal ganglion1.01e-088
nuclear complex of neuraxis1.01e-088
aggregate regional part of brain1.01e-088
collection of basal ganglia1.01e-088
cerebral subcortex1.01e-088
occipital lobe2.14e-0810
visual cortex2.14e-0810
neocortex2.14e-0810
posterior neural tube1.74e-0712
chordal neural plate1.74e-0712
spinal cord2.22e-076
dorsal region element2.22e-076
dorsum2.22e-076


TFBS overrepresentationSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.15.68962
MA0004.10.346933
MA0006.12.93736
MA0007.10.432721
MA0009.10.132208
MA0014.111.4913
MA0017.10.0516899
MA0019.11.21289
MA0024.11.11455
MA0025.10.111175
MA0027.11.27052
MA0028.10.0655462
MA0029.10.0893176
MA0030.10.0931821
MA0031.10.0733978
MA0038.10.316203
MA0040.10.141494
MA0041.10.0242766
MA0042.10.00762743
MA0043.10.212781
MA0046.10.0411803
MA0048.16.19437
MA0050.10.00931059
MA0051.10.0420744
MA0052.10.147657
MA0055.15.36718
MA0056.10
MA0057.11.70584
MA0058.10.03529
MA0059.10.00286884
MA0060.11.29743
MA0061.10.240988
MA0063.10
MA0066.10.291629
MA0067.10.966423
MA0068.11.64141
MA0069.10.617957
MA0070.10.140515
MA0071.10.21041
MA0072.10.134212
MA0073.123.6405
MA0074.10.351591
MA0076.10.0203947
MA0077.10.284799
MA0078.10.135301
MA0081.10.03196
MA0083.10.464202
MA0084.10.387212
MA0087.10.392236
MA0088.10.971145
MA0089.10
MA0090.10.157714
MA0091.10.163367
MA0092.10.0488086
MA0093.10.184907
MA0095.10
MA0098.10
MA0100.10.197637
MA0101.10.0926327
MA0103.10.105687
MA0105.12.26562
MA0106.11.21786
MA0107.10.221684
MA0108.20.12474
MA0109.10
MA0111.10.567926
MA0113.10.21929
MA0114.10.0752961
MA0115.10.215405
MA0116.11.14333
MA0117.10.415741
MA0119.10.34131
MA0122.10.449038
MA0124.10.429949
MA0125.10.103968
MA0130.10
MA0131.10.0349831
MA0132.10
MA0133.10
MA0135.10.0707712
MA0136.10.146698
MA0139.10.614007
MA0140.10.320996
MA0141.10.0885143
MA0142.10.0661422
MA0143.10.00283477
MA0144.10.050321
MA0145.10.0527071
MA0146.11.03362
MA0147.11.73562
MA0148.10.0197494
MA0149.12.71891
MA0062.20.0678195
MA0035.20.0534906
MA0039.26.08471
MA0138.20.367611
MA0002.20.259976
MA0137.20.0844404
MA0104.21.66079
MA0047.20.0378876
MA0112.20.815461
MA0065.21.18618
MA0150.10.000719614
MA0151.10
MA0152.10.184023
MA0153.10.265186
MA0154.10.459406
MA0155.14.04027
MA0156.10.0400929
MA0157.10.288352
MA0158.10
MA0159.10.257543
MA0160.10.174279
MA0161.10
MA0162.115.2265
MA0163.16.38696
MA0164.10.0281517
MA0080.20.0573992
MA0018.20.160384
MA0099.20.00554279
MA0079.225.9942
MA0102.20.428243
MA0258.10.328549
MA0259.11.16974
MA0442.10