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MCL coexpression mm9:2424

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Phase1 CAGE Peaks

 Short description
Mm9::chr5:33088966..33088990,-p3@Pisd
Mm9::chr7:133903127..133903165,+p1@Mapk3
Mm9::chr7:134158099..134158119,-p2@Mvp
Mm9::chr7:52317763..52317806,-p1@Prrg2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0004609phosphatidylserine decarboxylase activity0.0328875546140376
GO:0001784phosphotyrosine binding0.0328875546140376
GO:0045309protein phosphorylated amino acid binding0.0328875546140376
GO:0043330response to exogenous dsRNA0.0328875546140376
GO:0031663lipopolysaccharide-mediated signaling pathway0.0328875546140376
GO:0032496response to lipopolysaccharide0.0328875546140376
GO:0051219phosphoprotein binding0.0328875546140376
GO:0004707MAP kinase activity0.0328875546140376
GO:0043331response to dsRNA0.0328875546140376
GO:0002237response to molecule of bacterial origin0.0386933980653405
GO:0019233sensory perception of pain0.049278644848648
GO:0016831carboxy-lyase activity0.049278644848648



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
intestine4.17e-1231
gastrointestinal system8.79e-1247
mucosa3.71e-0815
organ component layer3.17e-0724
intestinal mucosa3.54e-0713
anatomical wall3.54e-0713
wall of intestine3.54e-0713
gastrointestinal system mucosa3.54e-0713


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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