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FANTOM5 SSTAR (Semantic catalog of Samples, Transcription initiation And Regulators) provide a way to explore samples, transcriptional initiations, and regulators analyzed in the FANTOM5 project. If you have any questions or comments, please contact to fantom@gsc.riken.jp

 

Search genes
		Examples	Browse
Samples	Details of profiled samples (incl. primary cells, cell lines, and tissues)	Smooth Muscle Cells - Aortic, donor0	human mouse
Sample classifications	Samples profiled in FANTOM5 are systematically classified by defining FANTON5 sample ontology (FF), consisting of Cell type (CL), Diseases (DOID), and Anatomy (UBERON).	smooth muscle cell	Cell Type (CL) Disease (DOID) Anatomy (UBERON) FANTOM5 (FF)
Co-expression	CAGE peaks (TSS regions) are grouped based on expression, by using MCL	C18 (in human)	Human Mouse
Motifs	de-novo motifs discovered in the proximal region to the CAGE peaks, which are grouped by MacroApe	FOXD1_si	MacroAPE
Transcription factors	Transcription factors.	SOX2	human mouse