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MCL coexpression mm9:429

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Phase1 CAGE Peaks

 Short description
Mm9::chr15:99553856..99553873,+p@chr15:99553856..99553873
+
Mm9::chr3:14863235..14863254,-p@chr3:14863235..14863254
-
Mm9::chr3:14863476..14863483,+p3@Car3
Mm9::chr3:14863486..14863494,+p5@Car3
Mm9::chr3:14863495..14863521,+p1@Car3
Mm9::chr3:14870039..14870084,+p@chr3:14870039..14870084
+
Mm9::chr3:14870094..14870137,+p@chr3:14870094..14870137
+
Mm9::chr3:14870141..14870163,+p@chr3:14870141..14870163
+
Mm9::chr3:14871545..14871546,+p@chr3:14871545..14871546
+
Mm9::chr3:14871599..14871610,+p@chr3:14871599..14871610
+
Mm9::chr3:14871636..14871653,+p@chr3:14871636..14871653
+
Mm9::chr3:14871661..14871670,+p@chr3:14871661..14871670
+
Mm9::chr3:14871682..14871692,+p@chr3:14871682..14871692
+
Mm9::chr3:14871700..14871705,+p@chr3:14871700..14871705
+
Mm9::chr3:14871709..14871717,+p@chr3:14871709..14871717
+
Mm9::chr3:14871724..14871735,+p@chr3:14871724..14871735
+
Mm9::chr3:14871767..14871772,+p@chr3:14871767..14871772
+
Mm9::chr7:123175510..123175523,+p@chr7:123175510..123175523
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0016151nickel ion binding0.00372541500027393
GO:0004089carbonate dehydratase activity0.00884786062565058
GO:0016836hydro-lyase activity0.0137374678135101
GO:0016835carbon-oxygen lyase activity0.0137374678135101
GO:0006730one-carbon compound metabolic process0.0143428477510546
GO:0016829lyase activity0.0235942950017349



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
exocrine gland5.75e-1125
exocrine system5.75e-1125
liver8.29e-1022
epithelial sac8.29e-1022
digestive gland8.29e-1022
epithelium of foregut-midgut junction8.29e-1022
anatomical boundary8.29e-1022
hepatobiliary system8.29e-1022
foregut-midgut junction8.29e-1022
hepatic diverticulum8.29e-1022
liver primordium8.29e-1022
septum transversum8.29e-1022
liver bud8.29e-1022
digestive tract diverticulum3.52e-0923
sac3.52e-0923


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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