Personal tools

UBERON:0001173

From FANTOM5_SSTAR

Revision as of 17:16, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:biliary tree
Namespace:FANTOM
Definition:"Hollow tree organ, the organ parts of which consists of the bile ducts[FMA]." [FMA:14665, Wikipedia:Biliary_tract]
Xrefs:
links:

AAO:0011020
FMA:14665
GAID:279
MA:0001273
MESH:A.03.159
ncithesaurus:Biliary_Tract
SCTID:181267003

XAO:0000455
Synonyms: "biliary tract" EXACT []
Alt_id: UBERON:FMA_14665-XAO_0000455
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004119(endoderm-derived structure),UBERON:0013765(digestive system element)
develops_from:UBERON:0004912(biliary bud)
part_of:UBERON:0002294(biliary system)



Children

part of:UBERON:0001174 (common bile duct),UBERON:0002110 (gallbladder),UBERON:0002394 (bile duct),UBERON:0005171 (hepatic duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001173 (biliary tree), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.07e-86FFCP PHASE2:Mm9::chr16:30944451..30944485,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr16:30944451..30944485, +
3.07e-86FFCP PHASE2:Mm9::chr15:82209805..82209851,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr15:82209805..82209851, +
3.07e-86FFCP PHASE1:Mm9::chr9:42915101..42915106,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr7:118133901..118133904,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr7:118133901..118133904, -
3.07e-86FFCP PHASE1:Mm9::chr6:15678147..15678149,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr6:15678147..15678149, -
3.07e-86FFCP PHASE1:Mm9::chr16:91441786..91441787,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr16:91441786..91441787, -
3.07e-86FFCP PHASE1:Mm9::chr11:117737077..117737096,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:117737077..117737096, -
3.07e-86FFCP PHASE2:Mm9::chr9:45920408..45920437,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr9:45920408..45920437, -
3.07e-86FFCP PHASE2:Mm9::chr16:11009028..11009039,+#_5703c93ecdfe5914d53ea23a4cc8b84cp4@Gm4262
3.07e-86FFCP PHASE2:Mm9::chr4:57687477..57687488,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr4:57687477..57687488, +
3.07e-86FFCP PHASE1:Mm9::chr7:109031260..109031268,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr7:109031260..109031268, +
3.07e-86FFCP PHASE1:Mm9::chr17:35945332..35945335,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:35945332..35945335, +
3.07e-86FFCP PHASE2:Mm9::chr11:48685851..48685860,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:48685851..48685860, -
3.07e-86FFCP PHASE2:Mm9::chr11:115280630..115280662,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:115280630..115280662, +
3.07e-86FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr5:32912678..32912687, +
3.07e-86FFCP PHASE2:Mm9::chr18:5125608..5125613,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr18:5125608..5125613, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585949..85585969,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr10:85585949..85585969, -
3.07e-86FFCP PHASE1:Mm9::chr8:25530071..25530072,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr8:25530071..25530072, +
3.07e-86FFCP PHASE1:Mm9::chr4:100890388..100890423,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr4:100890388..100890423, +
3.07e-86FFCP PHASE1:Mm9::chr6:91441074..91441080,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr6:91441074..91441080, -
3.07e-86FFCP PHASE1:Mm9::chr17:35094068..35094092,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:35094068..35094092, -
3.07e-86FFCP PHASE2:Mm9::chr8:114123814..114123821,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr8:114123814..114123821, -
3.07e-86FFCP PHASE2:Mm9::chr11:88890706..88890745,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:88890706..88890745, +
3.07e-86FFCP PHASE1:Mm9::chr6:129180613..129180616,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chr3:121593688..121593695,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr3:121593688..121593695, +
3.07e-86FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr15:32178407..32178408, -
3.07e-86FFCP PHASE1:Mm9::chr12:85288471..85288502,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr12:85288471..85288502, +
3.07e-86FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:48822294..48822295, -
3.07e-86FFCP PHASE2:Mm9::chr17:28107053..28107062,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:28107053..28107062, -
3.07e-86FFCP PHASE1:Mm9::chr1:132405466..132405470,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr1:132405466..132405470, +
3.07e-86FFCP PHASE1:Mm9::chr14:101778294..101778296,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr14:101778294..101778296, +
3.07e-86FFCP PHASE1:Mm9::chr12:87046930..87046933,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr12:87046930..87046933, +
3.07e-86FFCP PHASE2:Mm9::chr16:85801525..85801529,-#_5703c93ecdfe5914d53ea23a4cc8b84cp6@Adamts1
3.07e-86FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr5:76329688..76329692, -
3.07e-86FFCP PHASE2:Mm9::chr15:97402708..97402712,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr15:97402708..97402712, +
3.07e-86FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr4:141645056..141645068,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr4:141645056..141645068, +
3.07e-86FFCP PHASE2:Mm9::chr11:54785454..54785456,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:54785454..54785456, -
3.07e-86FFCP PHASE2:Mm9::chr11:118287827..118287833,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:118287827..118287833, -
3.07e-86FFCP PHASE1:Mm9::chr8:114250006..114250039,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr8:114250006..114250039, -
3.07e-86FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr4:57687477..57687488, +
3.07e-86FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr15:97402708..97402712, +
3.07e-86FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr1:163794592..163794593, +
3.07e-86FFCP PHASE2:Mm9::chr4:86335502..86335509,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr4:86335502..86335509, +
3.07e-86FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr7:117101788..117101793,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr7:117101788..117101793, +
3.07e-86FFCP PHASE1:Mm9::chr2:169549462..169549477,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr2:169549462..169549477, +
3.07e-86FFCP PHASE2:Mm9::chr12:8400090..8400093,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr12:8400090..8400093, +
3.07e-86FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr1:138241693..138241697, +
3.07e-86FFCP PHASE2:Mm9::chr13:113543694..113543702,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr13:113543694..113543702, -
3.07e-86FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr10:93895817..93895819, -
3.07e-86FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:35106749..35106752, -
3.07e-86FFCP PHASE2:Mm9::chr8:114250006..114250039,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr8:114250006..114250039, -
3.07e-86FFCP PHASE2:Mm9::chr11:117737077..117737096,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:117737077..117737096, -
3.07e-86FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr1:186559285..186559288, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:109223779..109223789, -
3.07e-86FFCP PHASE2:Mm9::chr17:35096519..35096524,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:35096519..35096524, +
3.07e-86FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr8:86713876..86713879, +
3.07e-86FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr16:28911901..28911906,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr16:28911901..28911906, -
3.07e-86FFCP PHASE1:Mm9::chr6:34549876..34549892,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr6:34549876..34549892, -
3.07e-86FFCP PHASE2:Mm9::chr15:90508949..90508955,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr15:90508949..90508955, -
3.07e-86FFCP PHASE1:Mm9::chr18:38831400..38831402,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr18:38831400..38831402, -
3.07e-86FFCP PHASE1:Mm9::chr10:85587155..85587188,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr10:85587155..85587188, +
3.07e-86FFCP PHASE2:Mm9::chr5:114422970..114422985,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr5:114422970..114422985, -
3.07e-86FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:34798597..34798606, +
3.07e-86FFCP PHASE1:Mm9::chr12:25364645..25364655,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr12:25364645..25364655, +
3.07e-86FFCP PHASE1:Mm9::chr11:68437375..68437378,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:68437375..68437378, +
3.07e-86FFCP PHASE2:Mm9::chr7:87919399..87919406,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr7:87919399..87919406, +
3.07e-86FFCP PHASE2:Mm9::chr18:35900327..35900366,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr18:35900327..35900366, +
3.07e-86FFCP PHASE2:Mm9::chr12:100752983..100752984,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr12:100752983..100752984, +
3.07e-86FFCP PHASE2:Mm9::chr2:133323630..133323631,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr9:42915185..42915192,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr9:42915185..42915192, -
3.07e-86FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr13:113542610..113542614, +
3.07e-86FFCP PHASE2:Mm9::chr17:34796428..34796430,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:34796428..34796430, -
3.07e-86FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr19:29573929..29573932, +
3.07e-86FFCP PHASE2:Mm9::chr5:64344878..64344887,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr5:64344878..64344887, -
3.07e-86FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chr12:86691503..86691504,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr12:86691503..86691504, -
3.07e-86FFCP PHASE2:Mm9::chr6:92938260..92938264,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr6:92938260..92938264, -
3.07e-86FFCP PHASE2:Mm9::chr18:39297570..39297573,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr18:39297570..39297573, -
3.07e-86FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr8:89310639..89310641, -
3.07e-86FFCP PHASE1:Mm9::chr8:111108947..111108951,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr8:111108947..111108951, +
3.07e-86FFCP PHASE1:Mm9::chr5:33088768..33088773,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr5:33088768..33088773, +
3.07e-86FFCP PHASE2:Mm9::chr18:65159026..65159034,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr18:44793802..44793835,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr18:44793802..44793835, +
3.07e-86FFCP PHASE1:Mm9::chr6:92938260..92938264,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr6:92938260..92938264, -
3.07e-86FFCP PHASE1:Mm9::chr9:62199266..62199267,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr17:35093616..35093631,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:35093616..35093631, -
3.07e-86FFCP PHASE1:Mm9::chr13:5840965..5840966,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr13:5840965..5840966, +
3.07e-86FFCP PHASE2:Mm9::chr1:173044327..173044331,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr1:173044327..173044331, +
3.07e-86FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:118287827..118287833, -
3.07e-86FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr4:86335502..86335509, +
3.07e-86FFCP PHASE2:Mm9::chr13:113053257..113053258,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr13:113053257..113053258, +
3.07e-86FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr10:8471698..8471701, +
3.07e-86FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr2:84756280..84756286, +
3.07e-86FFCP PHASE2:Mm9::chr18:60398371..60398393,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr18:60398371..60398393, -
3.07e-86FFCP PHASE2:Mm9::chr8:89310639..89310641,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr8:89310639..89310641, -
3.07e-86FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr9:45920408..45920437, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Hollow tree organ, the organ parts of which consist of the bile ducts.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001173&oldid=3277208"