UBERON:0002020
From FANTOM5_SSTAR
| Name: | gray matter | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Heterogeneous cluster of neural somas in the brain and the spinal cord." [Wikipedia:Gray_matter] | ||
| Xrefs: |
| ||
| Synonyms: |
"gray mater" RELATED [ZFA:0001681] "gray matter" EXACT [] "grey matter" EXACT [] "grey substance" EXACT [] "neuronal grey matter" EXACT [EHDAA2:0004658] "substantia grisea" EXACT [FMA:67242, FMA:TA] | ||
| Alt_id: | UBERON:FMA_67242-MA_0001112 | ||
| Subset: |
uberon_slim vertebrate_core |
200px-Spinal_nerve.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0011215(central nervous system cell part cluster) |
|---|---|
| part_of: | UBERON:0001017(central nervous system) |
Children
| is a: | UBERON:0002315 (gray matter of spinal cord),UBERON:0003528 (brain grey matter),UBERON:0007245 (nuclear complex of neuraxis) |
|---|---|
| part of: | UBERON:0016548 (central nervous system gray matter layer) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
- 10040-101F4 (frontal lobe, adult, pool1)
- 10071-101I8 (duodenum, fetal, donor1)
- 10072-101I9 (parietal lobe, fetal, donor1)
- 10073-102A1 (occipital lobe, fetal, donor1)
... further results Mouse (Mus musculus)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
- 10040-101F4 (frontal lobe, adult, pool1)
- 10071-101I8 (duodenum, fetal, donor1)
- 10072-101I9 (parietal lobe, fetal, donor1)
- 10073-102A1 (occipital lobe, fetal, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002020 (gray matter), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.77e-120 | FFCP PHASE2:Hg19::chr11:49582389..49582417,+#_470c86f0784c4b493a0511b806ac2f7a | p1@ENST00000527477, p1@ENST00000530858 |
| 2.77e-120 | FFCP PHASE1:Hg19::chr11:49582389..49582417,+#_470c86f0784c4b493a0511b806ac2f7a | p1@ENST00000527477, p1@ENST00000530858 |
| 3.69e-119 | FFCP PHASE2:Hg19::chr14:24047743..24047754,-#_2ea7877c67c09ae33c18909fbc52e19e | p12@JPH4 |
| 3.69e-119 | FFCP PHASE1:Hg19::chr14:24047743..24047754,-#_2ea7877c67c09ae33c18909fbc52e19e | p12@JPH4 |
| 3.97e-118 | FFCP PHASE2:Hg19::chr12:11652664..11652681,+#_da807845d601ffe55082aca6b021b186 | p@chr12:11652664..11652681, + |
| 3.97e-118 | FFCP PHASE1:Hg19::chr12:11652664..11652681,+#_da807845d601ffe55082aca6b021b186 | p@chr12:11652664..11652681, + |
| 2.4e-117 | FFCP PHASE1:Hg19::chr4:6474472..6474528,-#_01b52e2cdaf3620c6dba7aa286fbf654 | p6@PPP2R2C |
| 2.4e-117 | FFCP PHASE2:Hg19::chr4:6474472..6474528,-#_01b52e2cdaf3620c6dba7aa286fbf654 | p6@PPP2R2C |
| 2.24e-116 | FFCP PHASE1:Hg19::chr2:210444748..210444770,+#_24c73b958ddbb82c47a9dbb7bd635a9f | p20@MAP2 |
| 2.24e-116 | FFCP PHASE2:Hg19::chr2:210444748..210444770,+#_24c73b958ddbb82c47a9dbb7bd635a9f | p20@MAP2 |
| 6.97e-116 | FFCP PHASE1:Hg19::chr7:150748288..150748337,+#_7690847063fc481ca7292f3df745d463 | p1@ACCN3 |
| 6.97e-116 | FFCP PHASE2:Hg19::chr7:150748288..150748337,+#_7690847063fc481ca7292f3df745d463 | p1@ACCN3 |
| 4.01e-115 | FFCP PHASE2:Hg19::chr19:54462732..54462743,+#_8f73de82481c4eaccaec2dc3b13c461b | p@chr19:54462732..54462743, + |
| 4.01e-115 | FFCP PHASE1:Hg19::chr19:54462732..54462743,+#_8f73de82481c4eaccaec2dc3b13c461b | p@chr19:54462732..54462743, + |
| 1.14e-114 | FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_cf5ea7b585d0ac7753c7f4e8f09b8663 | p3@GRIN2B |
| 1.14e-114 | FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_cf5ea7b585d0ac7753c7f4e8f09b8663 | p3@GRIN2B |
| 3.44e-114 | FFCP PHASE1:Hg19::chr19:55794942..55794982,+#_95ba889863eabdff12b54cd5c19480e8 | p@chr19:55794942..55794982, + |
| 3.44e-114 | FFCP PHASE2:Hg19::chr19:55794942..55794982,+#_95ba889863eabdff12b54cd5c19480e8 | p@chr19:55794942..55794982, + |
| 4.09e-114 | FFCP PHASE1:Hg19::chr2:115200192..115200244,+#_b209b07002ff1a3a7d197b76d489138f | p3@DPP10 |
| 4.09e-114 | FFCP PHASE2:Hg19::chr2:115200192..115200244,+#_b209b07002ff1a3a7d197b76d489138f | p3@DPP10 |
| 5.07e-114 | FFCP PHASE1:Hg19::chr19:54462276..54462325,+#_1a1b6c1446a4594b731f852fc0763b93 | p@chr19:54462276..54462325, + |
| 5.07e-114 | FFCP PHASE2:Hg19::chr19:54462276..54462325,+#_1a1b6c1446a4594b731f852fc0763b93 | p@chr19:54462276..54462325, + |
| 1.45e-113 | FFCP PHASE2:Hg19::chr16:24267508..24267525,+#_59b0d97de39b6d8f4cd38b1daa12a787 | p4@CACNG3 |
| 1.45e-113 | FFCP PHASE1:Hg19::chr16:24267508..24267525,+#_59b0d97de39b6d8f4cd38b1daa12a787 | p4@CACNG3 |
| 2.01e-113 | FFCP PHASE2:Hg19::chr20:1975321..1975338,-#_545fb54463dea4caa7e34dad1c259d37 | p3@PDYN |
| 2.01e-113 | FFCP PHASE1:Hg19::chr20:1975321..1975338,-#_545fb54463dea4caa7e34dad1c259d37 | p3@PDYN |
| 9.5e-113 | FFCP PHASE2:Hg19::chr5:160975135..160975218,-#_4ef46f7019fe253281a1f4c65a6ae54c | p3@GABRB2 |
| 9.5e-113 | FFCP PHASE1:Hg19::chr5:160975135..160975218,-#_4ef46f7019fe253281a1f4c65a6ae54c | p3@GABRB2 |
| 1.47e-112 | FFCP PHASE2:Hg19::chr11:133402367..133402378,-#_3182ca22496273652175177ce3b13086 | p8@OPCML |
| 1.47e-112 | FFCP PHASE1:Hg19::chr11:133402367..133402378,-#_3182ca22496273652175177ce3b13086 | p8@OPCML |
| 2.02e-112 | FFCP PHASE1:Hg19::chr12:14134636..14134651,-#_d2e3948bf81dfae6f4edee89166d47bc | p@chr12:14134636..14134651, - |
| 2.02e-112 | FFCP PHASE2:Hg19::chr12:14134636..14134651,-#_d2e3948bf81dfae6f4edee89166d47bc | p@chr12:14134636..14134651, - |
| 4.68e-112 | FFCP PHASE2:Hg19::chr4:6474536..6474563,-#_d3d739312bd747754f0ebcd4df0e95b6 | p9@PPP2R2C |
| 4.68e-112 | FFCP PHASE1:Hg19::chr4:6474536..6474563,-#_d3d739312bd747754f0ebcd4df0e95b6 | p9@PPP2R2C |
| 2.32e-111 | FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_5384a56eeb47b45f7c7ef3b951f424c2 | p5@ST8SIA3 |
| 2.32e-111 | FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_5384a56eeb47b45f7c7ef3b951f424c2 | p5@ST8SIA3 |
| 2.51e-111 | FFCP PHASE1:Hg19::chr19:54462535..54462548,+#_ea5ea24ea582345059feec7cb3ffd1e4 | p@chr19:54462535..54462548, + |
| 2.51e-111 | FFCP PHASE2:Hg19::chr19:54462535..54462548,+#_ea5ea24ea582345059feec7cb3ffd1e4 | p@chr19:54462535..54462548, + |
| 4.73e-111 | FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_224ac3202b362816628e8520fa296bde | p5@OPCML |
| 4.73e-111 | FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_224ac3202b362816628e8520fa296bde | p5@OPCML |
| 8.62e-111 | FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_8e9667d6ed1964b4a4bb8459d64e40be | p@chr5:80255907..80255942, + |
| 8.62e-111 | FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_8e9667d6ed1964b4a4bb8459d64e40be | p@chr5:80255907..80255942, + |
| 2.43e-110 | FFCP PHASE1:Hg19::chr6:62390886..62390903,-#_8f4cd3850d82c6f8375fdbabc429906c | p1@ENST00000511849 |
| 2.43e-110 | FFCP PHASE2:Hg19::chr6:62390886..62390903,-#_8f4cd3850d82c6f8375fdbabc429906c | p1@ENST00000511849 |
| 3.36e-110 | FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_6fc1c35a64b5022b37b539a21ca0a8fe | p1@NR2E1 |
| 3.36e-110 | FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_6fc1c35a64b5022b37b539a21ca0a8fe | p1@NR2E1 |
| 5.09e-110 | FFCP PHASE1:Hg19::chr9:112629512..112629528,+#_e01d911e203b8ba9aae3be9f0baa27f2 | p7@PALM2 |
| 5.09e-110 | FFCP PHASE2:Hg19::chr9:112629512..112629528,+#_e01d911e203b8ba9aae3be9f0baa27f2 | p7@PALM2 |
| 8.14e-110 | FFCP PHASE1:Hg19::chrX:152939089..152939119,-#_414c4626ba585183a81ed540159c3566 | p2@PNCK |
| 8.14e-110 | FFCP PHASE2:Hg19::chrX:152939089..152939119,-#_414c4626ba585183a81ed540159c3566 | p2@PNCK |
| 3.28e-109 | FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_242bb85c96cec9626d622f406dc08787 | p2@CDH9 |
| 3.28e-109 | FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_242bb85c96cec9626d622f406dc08787 | p2@CDH9 |
| 8.01e-109 | FFCP PHASE2:Hg19::chr19:54462010..54462060,+#_7f5c0a1d7fe789db57c57e3ad8252007 | p@chr19:54462010..54462060, + |
| 8.01e-109 | FFCP PHASE1:Hg19::chr19:54462010..54462060,+#_7f5c0a1d7fe789db57c57e3ad8252007 | p@chr19:54462010..54462060, + |
| 8.43e-109 | FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_5f4b3a1abc3ccf7b08d0f3f86f49163f | p14@PALM2-AKAP2 |
| 8.43e-109 | FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_5f4b3a1abc3ccf7b08d0f3f86f49163f | p14@PALM2-AKAP2 |
| 1.04e-108 | FFCP PHASE1:Hg19::chr15:80735246..80735321,+#_4059d0fec73f1ad2fa60f0316622c0ce | p3@ARNT2 |
| 1.04e-108 | FFCP PHASE2:Hg19::chr15:80735246..80735321,+#_4059d0fec73f1ad2fa60f0316622c0ce | p3@ARNT2 |
| 1.61e-108 | FFCP PHASE2:Hg19::chr11:89867681..89867695,+#_abd96a01521673d735911ab797b97fd9 | p2@NAALAD2 |
| 1.61e-108 | FFCP PHASE1:Hg19::chr11:89867681..89867695,+#_abd96a01521673d735911ab797b97fd9 | p2@NAALAD2 |
| 2.01e-108 | FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_a271d6ea2795e018df2e5fd35a114995 | p8@LRRC7 |
| 2.01e-108 | FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_a271d6ea2795e018df2e5fd35a114995 | p8@LRRC7 |
| 2.37e-108 | FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_af38c7c68b2d93f88badfdb486302243 | p@chr11:132982177..132982181, - |
| 2.37e-108 | FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_af38c7c68b2d93f88badfdb486302243 | p@chr11:132982177..132982181, - |
| 3.44e-108 | FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_89713d873dfcf0fe4b3cf2911e42e0d0 | p2@TIAM2 |
| 3.44e-108 | FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_89713d873dfcf0fe4b3cf2911e42e0d0 | p2@TIAM2 |
| 3.59e-108 | FFCP PHASE1:Hg19::chr19:54462560..54462571,+#_653db98cb04976597a72d7315f469b11 | p@chr19:54462560..54462571, + |
| 3.59e-108 | FFCP PHASE2:Hg19::chr19:54462560..54462571,+#_653db98cb04976597a72d7315f469b11 | p@chr19:54462560..54462571, + |
| 4.72e-108 | FFCP PHASE1:Hg19::chr17:77090555..77090587,-#_849bdd5cdbbc25369b232d0fe9e38aed | p@chr17:77090555..77090587, - |
| 4.72e-108 | FFCP PHASE2:Hg19::chr17:77090555..77090587,-#_849bdd5cdbbc25369b232d0fe9e38aed | p@chr17:77090555..77090587, - |
| 8.45e-108 | FFCP PHASE2:Hg19::chr2:8595510..8595529,-#_c0aabc4f675394a6af138790d92e378c | p@chr2:8595510..8595529, - |
| 8.45e-108 | FFCP PHASE1:Hg19::chr2:8595510..8595529,-#_c0aabc4f675394a6af138790d92e378c | p@chr2:8595510..8595529, - |
| 1.02e-107 | FFCP PHASE1:Hg19::chr20:1975298..1975316,-#_51fe512658afe0fb0bf5a36f5e72b23f | p2@PDYN |
| 1.02e-107 | FFCP PHASE2:Hg19::chr20:1975298..1975316,-#_51fe512658afe0fb0bf5a36f5e72b23f | p2@PDYN |
| 1.13e-107 | FFCP PHASE2:Hg19::chr4:46392290..46392324,-#_39b3fdbb653ad25f3596192faaf6ca8f | p13@GABRA2 |
| 1.13e-107 | FFCP PHASE1:Hg19::chr4:46392290..46392324,-#_39b3fdbb653ad25f3596192faaf6ca8f | p13@GABRA2 |
| 1.19e-107 | FFCP PHASE2:Hg19::chr16:56390359..56390376,+#_f1d5e0ee4b19ae76848be896da10608b | p@chr16:56390359..56390376, + |
| 1.19e-107 | FFCP PHASE1:Hg19::chr16:56390359..56390376,+#_f1d5e0ee4b19ae76848be896da10608b | p@chr16:56390359..56390376, + |
| 1.24e-107 | FFCP PHASE1:Hg19::chr1:156119798..156119834,+#_68f22b0baf990ffac19771cb85de21cd | p5@SEMA4A |
| 1.24e-107 | FFCP PHASE2:Hg19::chr1:156119798..156119834,+#_68f22b0baf990ffac19771cb85de21cd | p5@SEMA4A |
| 1.31e-107 | FFCP PHASE1:Hg19::chr7:54609764..54609789,+#_7f0013ff6e29f5a4dc5ef45f5b2a578f | p8@VSTM2A |
| 1.31e-107 | FFCP PHASE2:Hg19::chr7:54609764..54609789,+#_7f0013ff6e29f5a4dc5ef45f5b2a578f | p8@VSTM2A |
| 1.91e-107 | FFCP PHASE2:Hg19::chr12:14134689..14134704,-#_98b775a2353fd6cda4b273a099e6d51a | p@chr12:14134689..14134704, - |
| 1.91e-107 | FFCP PHASE1:Hg19::chr12:14134689..14134704,-#_98b775a2353fd6cda4b273a099e6d51a | p@chr12:14134689..14134704, - |
| 2.32e-107 | FFCP PHASE1:Hg19::chr12:14133820..14133830,-#_74ed83e5da24d761171114471f118962 | p@chr12:14133820..14133830, - |
| 2.32e-107 | FFCP PHASE2:Hg19::chr12:14133820..14133830,-#_74ed83e5da24d761171114471f118962 | p@chr12:14133820..14133830, - |
| 2.8e-107 | FFCP PHASE2:Hg19::chr12:57957885..57957898,+#_11b6e2c38e20193944049779f3320e6f | p@chr12:57957885..57957898, + |
| 2.8e-107 | FFCP PHASE1:Hg19::chr12:57957885..57957898,+#_11b6e2c38e20193944049779f3320e6f | p@chr12:57957885..57957898, + |
| 3.92e-107 | FFCP PHASE2:Hg19::chr6:101847075..101847092,+#_563b639352a0bf929926da1b562bece6 | p5@GRIK2 |
| 3.92e-107 | FFCP PHASE1:Hg19::chr6:101847075..101847092,+#_563b639352a0bf929926da1b562bece6 | p5@GRIK2 |
| 4.4e-107 | FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_a0608fe045ab65a46c4d1680d37c4ce2 | p8@PRKCZ |
| 4.4e-107 | FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_a0608fe045ab65a46c4d1680d37c4ce2 | p8@PRKCZ |
| 8.12e-107 | FFCP PHASE2:Hg19::chr20:34743645..34743687,-#_646a56b594ddd821d4cd8102714741ac | p1@ENST00000441208, p1@uc002xfa.1 |
| 8.12e-107 | FFCP PHASE1:Hg19::chr20:34743645..34743687,-#_646a56b594ddd821d4cd8102714741ac | p1@ENST00000441208, p1@uc002xfa.1 |
| 8.19e-107 | FFCP PHASE1:Hg19::chr2:196990526..196990535,-#_bcc5a8694c6aab54af154e3d2bea193b | p@chr2:196990526..196990535, - |
| 8.19e-107 | FFCP PHASE2:Hg19::chr2:196990526..196990535,-#_bcc5a8694c6aab54af154e3d2bea193b | p@chr2:196990526..196990535, - |
| 8.66e-107 | FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_1562fdbbae921ba7c7e852f936df3034 | p9@GPM6B |
| 8.66e-107 | FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_1562fdbbae921ba7c7e852f936df3034 | p9@GPM6B |
| 1.08e-106 | FFCP PHASE2:Hg19::chr16:24267634..24267671,+#_99a918dddd2db880dde12081a52491ff | p2@CACNG3 |
| 1.08e-106 | FFCP PHASE1:Hg19::chr16:24267634..24267671,+#_99a918dddd2db880dde12081a52491ff | p2@CACNG3 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Multi-tissue comprised of neurons, dendrites, axon terminals, glial cells, and capillaries.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
