FF:13553-145I7

Name:	COBL-a rinderpest infection
Species:	Human (Homo sapiens)
Library ID:	CNhs14419
Sample type:	time courses
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information strain UNDEFINED_STRAIN tissue UNDEFINED_TISSUE_TYPE dev stage UNDEFINED_DEV_STAGE sex UNDEFINED_SEX_TYPE age NA cell type UNDEFINED_CELL_TYPE cell line COBL-a company NA collaboration UNDEFINED_COLLABORATION External link for information [{{{sample_info_link}}} {{{sample_info_link}}}] RNA information lot number NA catalog number NA sample type total RNA extraction protocol (Details) NA

CAGE Accession numbers
Method Sample accession id CAGE  SAMD00022169 Library accession numbers Library id Method Exp. accession id Run accession id CNhs14419 CAGE DRX023417 DRR025812 Accession ID Hg19 Library id BAM CTSS CNhs14419 DRZ004237 DRZ005064 Accession ID Hg38 Library id BAM CTSS CNhs14419 DRZ008978 DRZ009805

Download raw sequence, BAM & CTSS
Hg19 Fasta BAM CTSS download download donwload Hg38 BAM CTSS download donwload

RNA-Seq Accession numbers
Method Sample accession id sRNA-Seq  SAMD00022169 Library accession numbers Library id Method Exp. accession id Run accession id SRhi10066.CCGTCC sRNA-Seq DRX037327 DRR041693 Accession ID Hg19 Library id BAM CTSS SRhi10066.CCGTCC DRZ007335 Accession ID Hg38 Library id BAM CTSS SRhi10066.CCGTCC

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>dataNo results for this sample

Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

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JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs14419This sample isn't target for the analysis

FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs14419This sample isn't target for the analysis

de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs14419

FANTOM5 (FF) ontology

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Direct parent terms

is_a relathionship
FF:0000210 human sample
FF:0000357 0 hr sample
FF:0200009 COBL-a rinderpest infection sample

Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
0050117 (disease by infectious agent)

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000357 (0 hr sample)
0200010 (rinderpest infection sample)
0200009 (COBL-a rinderpest infection sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA