CL:0000213: Difference between revisions
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|located_in= | |located_in= | ||
|name=lining cell | |name=lining cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:31, 12 September 2014
| Name: | lining cell |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism." [JB:jb] |
| Synonyms: | "boundary cell" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000215(barrier cell) |
|---|
Children
| is a: | CL:0000077 (mesothelial cell),CL:0000115 (endothelial cell),CL:0000214 (synovial cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 10493-107B7 (mesothelioma cell line:ACC-MESO-1)
- 10494-107B8 (mesothelioma cell line:ACC-MESO-4)
- 10845-111E8 (mesothelioma cell line:NCI-H28)
- 10846-111E9 (mesothelioma cell line:NCI-H226)
- 10847-111F1 (mesothelioma cell line:NCI-H2052)
- 10848-111F2 (mesothelioma cell line:NCI-H2452)
- 10849-111F3 (mesothelioma cell line:Mero-14)
- 10850-111F4 (mesothelioma cell line:Mero-25)
- 10851-111F5 (mesothelioma cell line:Mero-41)
... further results Mouse (Mus musculus)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 10493-107B7 (mesothelioma cell line:ACC-MESO-1)
- 10494-107B8 (mesothelioma cell line:ACC-MESO-4)
- 10845-111E8 (mesothelioma cell line:NCI-H28)
- 10846-111E9 (mesothelioma cell line:NCI-H226)
- 10847-111F1 (mesothelioma cell line:NCI-H2052)
- 10848-111F2 (mesothelioma cell line:NCI-H2452)
- 10849-111F3 (mesothelioma cell line:Mero-14)
- 10850-111F4 (mesothelioma cell line:Mero-25)
- 10851-111F5 (mesothelioma cell line:Mero-41)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000213 (lining cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.38e-90 | FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_072930dc9969cd3fef8b3e480eb8d3b5 | p@chr6:3753188..3753192, - |
| 9.38e-90 | FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_072930dc9969cd3fef8b3e480eb8d3b5 | p@chr6:3753188..3753192, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35106363..35106372,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:35106363..35106372, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:114250006..114250039,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr8:114250006..114250039, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr4:57687477..57687488, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:74684893..74684910,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr12:74684893..74684910, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:60279719..60279737,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr10:60279719..60279737, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr15:97402708..97402712, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr1:163794592..163794593, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:117101788..117101793,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr7:117101788..117101793, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:96429602..96429605,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr13:96429602..96429605, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:114123814..114123821,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr8:114123814..114123821, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:169549462..169549477,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr2:169549462..169549477, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr4:43407825..43407830, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr14:15179132..15179141,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p8@Il3ra |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr1:138241693..138241697, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr6:129180613..129180616, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:163794592..163794593,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr1:163794592..163794593, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr10:93895817..93895819, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:35106749..35106752, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:86691503..86691504,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr12:86691503..86691504, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:92938260..92938264,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr6:92938260..92938264, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:97402708..97402712,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr15:97402708..97402712, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:39297570..39297573,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr18:39297570..39297573, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr1:186559285..186559288, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr11:109223779..109223789, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:117101788..117101793,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr7:117101788..117101793, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:34549876..34549892,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr6:34549876..34549892, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:173044327..173044331,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr1:173044327..173044331, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:38831400..38831402,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr18:38831400..38831402, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:85587155..85587188,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr10:85587155..85587188, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:109031260..109031268,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr7:109031260..109031268, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:65159026..65159034,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr18:65159026..65159034, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:34798597..34798606, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:25364645..25364655,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr12:25364645..25364655, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:34798597..34798606,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:34798597..34798606, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:75375903..75375931,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr5:75375903..75375931, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:93499468..93499494,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr10:93499468..93499494, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:114250006..114250039,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr8:114250006..114250039, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr11:117829935..117829959, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:100890388..100890423,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr4:100890388..100890423, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:8586393..8586401,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr10:8586393..8586401, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35945332..35945335,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:35945332..35945335, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:42915185..42915192,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr9:42915185..42915192, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:113053257..113053258,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr13:113053257..113053258, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:113543694..113543702,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr13:113543694..113543702, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr19:29573929..29573932, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:111108947..111108951,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr8:111108947..111108951, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:87919399..87919406,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr7:87919399..87919406, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr14:101778294..101778296,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr14:101778294..101778296, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:62199266..62199267,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr9:62199266..62199267, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:85586219..85586227,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr10:85586219..85586227, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr3:9705000..9705004,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p4@Pag1 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr5:76329688..76329692, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:124112234..124112240,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr5:124112234..124112240, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:127816016..127816021,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr8:127816016..127816021, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:67870501..67870507,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:67870501..67870507, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:42915185..42915192,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr9:42915185..42915192, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr13:113554186..113554192, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:137570295..137570315,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr1:137570295..137570315, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:33088768..33088773,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr5:33088768..33088773, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr8:89310639..89310641, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35094068..35094092,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:35094068..35094092, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:117829935..117829959,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr11:117829935..117829959, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:5840965..5840966,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr13:5840965..5840966, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:93942324..93942342,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr10:93942324..93942342, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:118133901..118133904,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr7:118133901..118133904, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:33088768..33088773,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr5:33088768..33088773, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:119254092..119254100,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr11:119254092..119254100, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:92938260..92938264,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr6:92938260..92938264, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr18:65159026..65159034, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:62199266..62199267,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr9:62199266..62199267, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr11:118287827..118287833, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:21389022..21389032,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr10:21389022..21389032, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr4:86335502..86335509, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr10:8471698..8471701, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr2:84756280..84756286, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:100890388..100890423,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr4:100890388..100890423, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr9:45920408..45920437, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr2:133323630..133323631, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:173044327..173044331,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr1:173044327..173044331, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:8928284..8928331,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr14:8928284..8928331, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:76329688..76329692,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr5:76329688..76329692, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35106749..35106752,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:35106749..35106752, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:15678147..15678149,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr6:15678147..15678149, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:109223756..109223764,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr11:109223756..109223764, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:68437375..68437378,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr11:68437375..68437378, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr12:86691503..86691504, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:141645056..141645068,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr4:141645056..141645068, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:116223548..116223551,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr9:116223548..116223551, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:93942324..93942342,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr10:93942324..93942342, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr13:113542610..113542614, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:86691530..86691535,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr12:86691530..86691535, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:60398371..60398393,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr18:60398371..60398393, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:32178407..32178408,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr15:32178407..32178408, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35093377..35093381,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:35093377..35093381, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:129407463..129407468,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr2:129407463..129407468, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:24807620..24807650,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:24807620..24807650, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr15:82193340..82193343, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr3:90270007..90270012,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr3:90270007..90270012, + |
