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CL:0000624

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Name:CD4-positive, alpha-beta T cell
Namespace:FANTOM
Definition:"A mature alpha-beta T cell that expresses an alpha-beta T cell receptor and the CD4 coreceptor." [GOC:add, ISBN:0781735149]
Synonyms: "CD4-positive, alpha-beta T lymphocyte" EXACT []
"CD4-positive, alpha-beta T-cell" EXACT []
"CD4-positive, alpha-beta T-lymphocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000791(mature alpha-beta T cell)
disjoint_from:CL:0000625(CD8-positive, alpha-beta T cell)



Children


is a:CL:0000792 (CD4-positive, CD25-positive, alpha-beta regulatory T cell),CL:0000895 (naive thymus-derived CD4-positive, alpha-beta T cell),CL:0000896 (activated CD4-positive, alpha-beta T cell),CL:0000897 (CD4-positive, alpha-beta memory T cell),CL:0002436 (mature CD4 single-positive thymocyte)
derives from:FF:0000031 (CD4-positive T cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11225-116C1 (CD4+ T Cells, donor1)
  • 11306-117C1 (CD4+ T Cells, donor2)
  • 11382-118B5 (CD4+ T Cells, donor3)
  • 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
  • 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
  • 11786-124B4 (CD4+CD25-CD45RA- memory conventional T cells, donor1)
  • 11813-124E4 (CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J))
  • 11814-124E5 (CD4+CD25+ regulatory T cells, pool1 (C57BL_6J))
  • 11815-124E6 (CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J))
  • 11816-124E7 (CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J))

... further results Mouse (Mus musculus)

  • 11225-116C1 (CD4+ T Cells, donor1)
  • 11306-117C1 (CD4+ T Cells, donor2)
  • 11382-118B5 (CD4+ T Cells, donor3)
  • 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
  • 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
  • 11786-124B4 (CD4+CD25-CD45RA- memory conventional T cells, donor1)
  • 11813-124E4 (CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J))
  • 11814-124E5 (CD4+CD25+ regulatory T cells, pool1 (C57BL_6J))
  • 11815-124E6 (CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J))
  • 11816-124E7 (CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J))

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000624 (CD4-positive, alpha-beta T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.36e-91FFCP PHASE1:Hg19::chr22:45713951..45713952,+#_084a2c74ab4560894843a858a4ec27dcp18@FAM118A
4.36e-91FFCP PHASE2:Hg19::chr22:45713951..45713952,+#_084a2c74ab4560894843a858a4ec27dcp18@FAM118A
2.39e-90FFCP PHASE1:Hg19::chr2:191535264..191535276,-#_e702e91bea83b82dc4c51cefa4f944e3p@chr2:191535264..191535276, -
2.39e-90FFCP PHASE2:Hg19::chr2:191535264..191535276,-#_e702e91bea83b82dc4c51cefa4f944e3p@chr2:191535264..191535276, -
1.32e-86FFCP PHASE2:Mm9::chr13:105412781..105412798,+#_2306390a5effc3d6144221806c0a0064p@chr13:105412781..105412798, +
1.32e-86FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_2306390a5effc3d6144221806c0a0064p@chr14:54817583..54817593, -
1.32e-86FFCP PHASE1:Mm9::chr5:123465978..123465989,-#_2306390a5effc3d6144221806c0a0064p@chr5:123465978..123465989, -
1.32e-86FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_2306390a5effc3d6144221806c0a0064p@chr1:140069290..140069308, +
1.32e-86FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_2306390a5effc3d6144221806c0a0064p4@ENSMUST00000148466, p4@uc008zmw.1
1.32e-86FFCP PHASE1:Mm9::chr13:105412781..105412798,+#_2306390a5effc3d6144221806c0a0064p@chr13:105412781..105412798, +
1.32e-86FFCP PHASE2:Mm9::chr5:123439274..123439290,+#_2306390a5effc3d6144221806c0a0064p4@ENSMUST00000148466, p4@uc008zmw.1
1.32e-86FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_2306390a5effc3d6144221806c0a0064p@chr14:54817583..54817593, -
1.32e-86FFCP PHASE2:Mm9::chr5:123465978..123465989,-#_2306390a5effc3d6144221806c0a0064p@chr5:123465978..123465989, -
1.32e-86FFCP PHASE1:Mm9::chr1:140069290..140069308,+#_2306390a5effc3d6144221806c0a0064p@chr1:140069290..140069308, +
1.32e-86FFCP PHASE1:Mm9::chr4:32328217..32328228,-#_2306390a5effc3d6144221806c0a0064p@chr4:32328217..32328228, -
1.32e-86FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_2306390a5effc3d6144221806c0a0064p@chr4:32328217..32328228, -
5.08e-85FFCP PHASE1:Hg19::chr21:32554632..32554638,+#_d8dbd009a6f4216aef2e7569707cb6bfp@chr21:32554632..32554638, +
5.08e-85FFCP PHASE2:Hg19::chr21:32554632..32554638,+#_d8dbd009a6f4216aef2e7569707cb6bfp@chr21:32554632..32554638, +
1.61e-84FFCP PHASE2:Hg19::chr15:63965111..63965141,-#_36558a688d1c50bf49b84d2beaa052e6p@chr15:63965111..63965141, -
1.61e-84FFCP PHASE1:Hg19::chr15:63965111..63965141,-#_36558a688d1c50bf49b84d2beaa052e6p@chr15:63965111..63965141, -
3.32e-84FFCP PHASE2:Hg19::chr10:33403568..33403605,+#_31222dc6dd725ccc4adfc1fb64c30ec8p@chr10:33403568..33403605, +
3.32e-84FFCP PHASE1:Hg19::chr10:33403568..33403605,+#_31222dc6dd725ccc4adfc1fb64c30ec8p@chr10:33403568..33403605, +
9.08e-84FFCP PHASE1:Hg19::chr17:46517705..46517712,+#_012e8ea020ce5f5836c0030b070b8b50p@chr17:46517705..46517712, +
9.08e-84FFCP PHASE2:Hg19::chr17:46517705..46517712,+#_012e8ea020ce5f5836c0030b070b8b50p@chr17:46517705..46517712, +
9.89e-82FFCP PHASE1:Hg19::chr3:73010101..73010107,+#_6c7ea96957de61ab35a1246ede476f85p@chr3:73010101..73010107, +
9.89e-82FFCP PHASE2:Hg19::chr3:73010101..73010107,+#_6c7ea96957de61ab35a1246ede476f85p@chr3:73010101..73010107, +
1.17e-81FFCP PHASE1:Hg19::chr21:32568033..32568068,-#_50ffdf99088f654507da6fce1eec098ep@chr21:32568033..32568068, -
1.17e-81FFCP PHASE2:Hg19::chr21:32568033..32568068,-#_50ffdf99088f654507da6fce1eec098ep@chr21:32568033..32568068, -
9.13e-79FFCP PHASE1:Hg19::chr20:57739225..57739236,-#_ba68a7932cd19f2b258291f01c204e11p@chr20:57739225..57739236, -
9.13e-79FFCP PHASE2:Hg19::chr20:57739225..57739236,-#_ba68a7932cd19f2b258291f01c204e11p@chr20:57739225..57739236, -
1.79e-78FFCP PHASE1:Hg19::chr20:35627331..35627342,+#_0c7d52965c746a0c134603f33e66a1ffp@chr20:35627331..35627342, +
1.79e-78FFCP PHASE2:Hg19::chr20:35627331..35627342,+#_0c7d52965c746a0c134603f33e66a1ffp@chr20:35627331..35627342, +
2.02e-77FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_118ee6a72ec097687b9b2794e2318c0fp3@Tnfrsf25
2.02e-77FFCP PHASE1:Mm9::chr6:48627672..48627688,+#_118ee6a72ec097687b9b2794e2318c0fp@chr6:48627672..48627688, +
2.02e-77FFCP PHASE2:Mm9::chr16:23175296..23175310,+#_118ee6a72ec097687b9b2794e2318c0fp3@uc007ytl.1
2.02e-77FFCP PHASE1:Mm9::chr16:23175296..23175310,+#_118ee6a72ec097687b9b2794e2318c0fp3@uc007ytl.1
2.02e-77FFCP PHASE2:Mm9::chr6:48627672..48627688,+#_118ee6a72ec097687b9b2794e2318c0fp@chr6:48627672..48627688, +
2.02e-77FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_118ee6a72ec097687b9b2794e2318c0fp3@Tnfrsf25
2.53e-77FFCP PHASE2:Mm9::chr4:32350855..32350868,+#_6f67465b4c7925ad19e15c0ac9c458fep@chr4:32350855..32350868, +
2.53e-77FFCP PHASE2:Mm9::chrX:54465221..54465232,+#_6f67465b4c7925ad19e15c0ac9c458fep4@Cd40lg
2.53e-77FFCP PHASE1:Mm9::chr4:32350855..32350868,+#_6f67465b4c7925ad19e15c0ac9c458fep@chr4:32350855..32350868, +
2.53e-77FFCP PHASE1:Mm9::chrX:54465221..54465232,+#_6f67465b4c7925ad19e15c0ac9c458fep4@Cd40lg
3.18e-77FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_ef657d5843b8b2ff463ba18423c72912p1@ENSMUST00000103733
3.18e-77FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_ef657d5843b8b2ff463ba18423c72912p1@ENSMUST00000103733
3.99e-77FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_88f725aef410afaa26066fd418122d87p@chr19:10869146..10869168, -
3.99e-77FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_88f725aef410afaa26066fd418122d87p@chr19:10869146..10869168, -
3.99e-77FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_88f725aef410afaa26066fd418122d87p@chr11:99015330..99015341, -
3.99e-77FFCP PHASE2:Mm9::chr9:14707004..14707015,-#_88f725aef410afaa26066fd418122d87p5@Folr4
3.99e-77FFCP PHASE1:Mm9::chr9:14707004..14707015,-#_88f725aef410afaa26066fd418122d87p5@Folr4
3.99e-77FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_88f725aef410afaa26066fd418122d87p@chr11:99015330..99015341, -
6.27e-77FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_5d8f3b39fbd2342b487191d78372acccp1@uc007tsm.1
6.27e-77FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_5d8f3b39fbd2342b487191d78372acccp@chr6:48637679..48637692, +
6.27e-77FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_5d8f3b39fbd2342b487191d78372acccp@chr6:48637679..48637692, +
6.27e-77FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_5d8f3b39fbd2342b487191d78372acccp1@uc007tsm.1
9.87e-77FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_58fa01bc290e81d261d3652a20dfe017p@chr4:32339511..32339518, +
9.87e-77FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_58fa01bc290e81d261d3652a20dfe017p@chr4:32339511..32339518, +
7.4e-76FFCP PHASE1:Mm9::chr6:125215345..125215360,-#_6c8b9891ce1efa066985b2c08014fb49p@chr6:125215345..125215360, -
7.4e-76FFCP PHASE2:Mm9::chr13:30925425..30925436,-#_6c8b9891ce1efa066985b2c08014fb49p@chr13:30925425..30925436, -
7.4e-76FFCP PHASE2:Mm9::chr14:54795946..54795960,+#_6c8b9891ce1efa066985b2c08014fb49p1@ENSMUST00000103701
7.4e-76FFCP PHASE2:Mm9::chr16:93777453..93777464,+#_6c8b9891ce1efa066985b2c08014fb49p@chr16:93777453..93777464, +
7.4e-76FFCP PHASE1:Mm9::chr16:93777453..93777464,+#_6c8b9891ce1efa066985b2c08014fb49p@chr16:93777453..93777464, +
7.4e-76FFCP PHASE1:Mm9::chr14:54795946..54795960,+#_6c8b9891ce1efa066985b2c08014fb49p1@ENSMUST00000103701
7.4e-76FFCP PHASE2:Mm9::chr6:125215345..125215360,-#_6c8b9891ce1efa066985b2c08014fb49p@chr6:125215345..125215360, -
7.4e-76FFCP PHASE1:Mm9::chr13:30925425..30925436,-#_6c8b9891ce1efa066985b2c08014fb49p@chr13:30925425..30925436, -
1.22e-75FFCP PHASE1:Hg19::chr1:6523897..6523925,+#_85034f7d4e352236ebb7bb33c9ff4197p@chr1:6523897..6523925, +
1.22e-75FFCP PHASE2:Hg19::chr1:6523897..6523925,+#_85034f7d4e352236ebb7bb33c9ff4197p@chr1:6523897..6523925, +
1.48e-75FFCP PHASE2:Hg19::chr18:13276704..13276707,-#_deaf99a64b93e335d213284fa987560dp@chr18:13276704..13276707, -
1.48e-75FFCP PHASE1:Hg19::chr18:13276704..13276707,-#_deaf99a64b93e335d213284fa987560dp@chr18:13276704..13276707, -
1.79e-75FFCP PHASE1:Hg19::chr5:176867600..176867609,+#_0da5778435cece717068ed1ce8bd374fp@chr5:176867600..176867609, +
1.79e-75FFCP PHASE2:Hg19::chr5:176867600..176867609,+#_0da5778435cece717068ed1ce8bd374fp@chr5:176867600..176867609, +
2.81e-75FFCP PHASE1:Hg19::chrX:118822985..118823001,+#_1b3fd4b19296a304ff078f9188006192p@chrX:118822985..118823001, +
2.81e-75FFCP PHASE2:Hg19::chrX:118822985..118823001,+#_1b3fd4b19296a304ff078f9188006192p@chrX:118822985..118823001, +
5.18e-75FFCP PHASE1:Hg19::chr10:104372787..104372796,-#_9da11cba03576903039ddee735a1e73ap@chr10:104372787..104372796, -
5.18e-75FFCP PHASE2:Hg19::chr10:104372787..104372796,-#_9da11cba03576903039ddee735a1e73ap@chr10:104372787..104372796, -
5.66e-75FFCP PHASE1:Hg19::chr18:13382698..13382707,+#_9744da95279f519a6cfdb88bac4080b0p@chr18:13382698..13382707, +
5.66e-75FFCP PHASE2:Hg19::chr18:13382698..13382707,+#_9744da95279f519a6cfdb88bac4080b0p@chr18:13382698..13382707, +
8.29e-75FFCP PHASE1:Hg19::chr12:25530605..25530613,+#_54e6da9179e86eab7112869c823a602fp@chr12:25530605..25530613, +
8.29e-75FFCP PHASE2:Hg19::chr12:25530605..25530613,+#_54e6da9179e86eab7112869c823a602fp@chr12:25530605..25530613, +
9.54e-75FFCP PHASE1:Hg19::chr6:16652333..16652336,+#_610dfe3fffa4c562e2d6d5be45d9d09dp@chr6:16652333..16652336, +
9.54e-75FFCP PHASE2:Hg19::chr6:16652333..16652336,+#_610dfe3fffa4c562e2d6d5be45d9d09dp@chr6:16652333..16652336, +
3.75e-74FFCP PHASE1:Hg19::chr6:143222105..143222116,+#_5cefd6681e235c69f61065607c565d1ap@chr6:143222105..143222116, +
3.75e-74FFCP PHASE2:Hg19::chr6:143222105..143222116,+#_5cefd6681e235c69f61065607c565d1ap@chr6:143222105..143222116, +
7.67e-74FFCP PHASE2:Hg19::chr5:141484393..141484402,+#_18bee9cfebd6a3227678605812d75d33p@chr5:141484393..141484402, +
7.67e-74FFCP PHASE1:Hg19::chr5:141484393..141484402,+#_18bee9cfebd6a3227678605812d75d33p@chr5:141484393..141484402, +
4.46e-73FFCP PHASE1:Hg19::chr2:162868437..162868456,+#_00a087749dbd708ee201fa925d94286dp@chr2:162868437..162868456, +
4.46e-73FFCP PHASE2:Hg19::chr2:162868437..162868456,+#_00a087749dbd708ee201fa925d94286dp@chr2:162868437..162868456, +
4.09e-70FFCP PHASE2:Hg19::chr20:5826953..5826990,-#_c61392b3e914c724d70fd7473debc559p@chr20:5826953..5826990, -
4.09e-70FFCP PHASE1:Hg19::chr20:5826953..5826990,-#_c61392b3e914c724d70fd7473debc559p@chr20:5826953..5826990, -
4.51e-70FFCP PHASE1:Mm9::chr14:54038027..54038068,+#_b9bbeb22a35b843344b53226cab324d4p1@uc007tsb.1
4.51e-70FFCP PHASE2:Mm9::chr14:54038027..54038068,+#_b9bbeb22a35b843344b53226cab324d4p1@uc007tsb.1
5.54e-70FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_46b8d2f100bbf7a8011966829737c71fp1@ENSMUST00000103714
5.54e-70FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_46b8d2f100bbf7a8011966829737c71fp1@ENSMUST00000103714
6.8e-70FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_4a4230269a74d44b75891d4591d73529p@chr14:56207154..56207165, -
6.8e-70FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_4a4230269a74d44b75891d4591d73529p@chr14:56207154..56207165, -
6.8e-70FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_4a4230269a74d44b75891d4591d73529p@chr5:123440486..123440504, -
6.8e-70FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_4a4230269a74d44b75891d4591d73529p@chr5:123440486..123440504, -
8.34e-70FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_5127948de956b1ce7835995d1880ced8p@chr5:123440767..123440778, +
8.34e-70FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_5127948de956b1ce7835995d1880ced8p@chr7:31935025..31935037, +
8.34e-70FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_5127948de956b1ce7835995d1880ced8p@chr8:84082784..84082795, +
8.34e-70FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_5127948de956b1ce7835995d1880ced8p@chr5:123440767..123440778, +

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