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{{CL
{{CL
|id=CL:0002563
|alt_id=
|name=intestinal epithelial cell
|namespace=cell
|def="An epithelial cell of the intestine." [GOC:tfm]
|xref=
|is_a=CL:0002251
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-01T05:18:31Z
|def="An epithelial cell of the intestine." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002563
|is_a=CL:0002251
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=intestinal epithelial cell
|namespace=FANTOM
|obo_creation_date=2011-03-01T05:18:31Z
|part_of=UBERON:0000160;;UBERON:0001277
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:44, 12 September 2014

Name:intestinal epithelial cell
Namespace:FANTOM
Definition:"An epithelial cell of the intestine." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-01T05:18:31Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002251(epithelial cell of alimentary canal)
part_of:UBERON:0000160(intestine),UBERON:0001277(intestinal epithelium)



Children


is a:CL:0000510 (paneth cell),CL:0000584 (enterocyte),CL:0002250 (intestinal crypt stem cell),CL:0002253 (epithelial cell of large intestine),CL:0002254 (epithelial cell of small intestine),FF:10812-111B2 (normal intestinal epithelial cell line:FHs 74 Int)
derives from:FF:0000080 (human intestinal epithelial cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002563 (intestinal epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr9:35801527..35801540,+#_c35a4a1d679d06f5c12f69d85cb10c04p@chr9:35801527..35801540, +
1.55e-98FFCP PHASE1:Hg19::chr9:35801527..35801540,+#_c35a4a1d679d06f5c12f69d85cb10c04p@chr9:35801527..35801540, +
4.97e-77FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_d57631713a92003e5a6389d16c123e5ap@chr8:122335239..122335244, +
4.97e-77FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_d57631713a92003e5a6389d16c123e5ap@chr8:122335239..122335244, +
1.86e-71FFCP PHASE2:Mm9::chr17:57201412..57201418,-#_59b7d83028f9c815e901000a187c277fp@chr17:57201412..57201418, -
1.86e-71FFCP PHASE1:Mm9::chr17:57201412..57201418,-#_59b7d83028f9c815e901000a187c277fp@chr17:57201412..57201418, -
1.41e-68FFCP PHASE1:Mm9::chr4:155434167..155434177,+#_66379793841825f8f723bf87bbb74b69p@chr4:155434167..155434177, +
1.41e-68FFCP PHASE2:Mm9::chr4:155434167..155434177,+#_66379793841825f8f723bf87bbb74b69p@chr4:155434167..155434177, +
1.7e-67FFCP PHASE1:Mm9::chr8:64192378..64192389,+#_903fc1a77cfcda86161f05096b032e4bp@chr8:64192378..64192389, +
1.7e-67FFCP PHASE2:Mm9::chr8:64192378..64192389,+#_903fc1a77cfcda86161f05096b032e4bp@chr8:64192378..64192389, +
2.4e-66FFCP PHASE2:Hg19::chr6:22919616..22919625,-#_ef9e60aa605308fb2b70b85a9d17f6f9p@chr6:22919616..22919625, -
2.4e-66FFCP PHASE1:Hg19::chr13:46093155..46093164,+#_ef9e60aa605308fb2b70b85a9d17f6f9p@chr13:46093155..46093164, +
2.4e-66FFCP PHASE2:Hg19::chr9:129830560..129830568,+#_ef9e60aa605308fb2b70b85a9d17f6f9p@chr9:129830560..129830568, +
2.4e-66FFCP PHASE1:Hg19::chr6:22919616..22919625,-#_ef9e60aa605308fb2b70b85a9d17f6f9p@chr6:22919616..22919625, -
2.4e-66FFCP PHASE2:Hg19::chr7:117329764..117329777,+#_ef9e60aa605308fb2b70b85a9d17f6f9p1@ENST00000429014
2.4e-66FFCP PHASE1:Hg19::chr9:129830560..129830568,+#_ef9e60aa605308fb2b70b85a9d17f6f9p@chr9:129830560..129830568, +
2.4e-66FFCP PHASE2:Hg19::chr2:127873614..127873626,+#_ef9e60aa605308fb2b70b85a9d17f6f9p@chr2:127873614..127873626, +
2.4e-66FFCP PHASE1:Hg19::chr7:117329764..117329777,+#_ef9e60aa605308fb2b70b85a9d17f6f9p1@ENST00000429014
2.4e-66FFCP PHASE2:Hg19::chr1:111023361..111023366,+#_ef9e60aa605308fb2b70b85a9d17f6f9p1@CYMP
2.4e-66FFCP PHASE2:Hg19::chr18:7034928..7034943,-#_ef9e60aa605308fb2b70b85a9d17f6f9p@chr18:7034928..7034943, -
2.4e-66FFCP PHASE1:Hg19::chr2:127873614..127873626,+#_ef9e60aa605308fb2b70b85a9d17f6f9p@chr2:127873614..127873626, +
2.4e-66FFCP PHASE1:Hg19::chr1:111023361..111023366,+#_ef9e60aa605308fb2b70b85a9d17f6f9p1@CYMP
2.4e-66FFCP PHASE2:Hg19::chr13:46093155..46093164,+#_ef9e60aa605308fb2b70b85a9d17f6f9p@chr13:46093155..46093164, +
2.4e-66FFCP PHASE1:Hg19::chr18:7034928..7034943,-#_ef9e60aa605308fb2b70b85a9d17f6f9p@chr18:7034928..7034943, -
3.35e-66FFCP PHASE1:Hg19::chrX:21849506..21849512,-#_5767680774b505ef73ead78f95e8cb26p@chrX:21849506..21849512, -
3.35e-66FFCP PHASE2:Hg19::chr20:17691468..17691474,-#_5767680774b505ef73ead78f95e8cb26p@chr20:17691468..17691474, -
3.35e-66FFCP PHASE1:Hg19::chr20:17691468..17691474,-#_5767680774b505ef73ead78f95e8cb26p@chr20:17691468..17691474, -
3.35e-66FFCP PHASE2:Hg19::chr2:205409703..205409714,+#_5767680774b505ef73ead78f95e8cb26p@chr2:205409703..205409714, +
3.35e-66FFCP PHASE2:Hg19::chr1:6420713..6420725,-#_5767680774b505ef73ead78f95e8cb26p16@ACOT7
3.35e-66FFCP PHASE2:Hg19::chrX:21849506..21849512,-#_5767680774b505ef73ead78f95e8cb26p@chrX:21849506..21849512, -
3.35e-66FFCP PHASE1:Hg19::chr2:205409703..205409714,+#_5767680774b505ef73ead78f95e8cb26p@chr2:205409703..205409714, +
3.35e-66FFCP PHASE1:Hg19::chr1:6420713..6420725,-#_5767680774b505ef73ead78f95e8cb26p16@ACOT7
4.67e-66FFCP PHASE2:Hg19::chr2:28340361..28340371,+#_34be8e77302a9cfe3351a13f89fb6568p@chr2:28340361..28340371, +
4.67e-66FFCP PHASE2:Hg19::chr9:138591077..138591111,-#_34be8e77302a9cfe3351a13f89fb6568p@chr9:138591077..138591111, -
4.67e-66FFCP PHASE1:Hg19::chr11:89925073..89925074,+#_34be8e77302a9cfe3351a13f89fb6568p@chr11:89925073..89925074, +
4.67e-66FFCP PHASE1:Hg19::chr2:28340361..28340371,+#_34be8e77302a9cfe3351a13f89fb6568p@chr2:28340361..28340371, +
4.67e-66FFCP PHASE1:Hg19::chr9:138591077..138591111,-#_34be8e77302a9cfe3351a13f89fb6568p@chr9:138591077..138591111, -
4.67e-66FFCP PHASE2:Hg19::chr11:89925073..89925074,+#_34be8e77302a9cfe3351a13f89fb6568p@chr11:89925073..89925074, +
3.55e-65FFCP PHASE1:Mm9::chr3:122215917..122215967,-#_43031b48511fef8b81b32f456a92053ap@chr3:122215917..122215967, -
3.55e-65FFCP PHASE2:Mm9::chr3:122215917..122215967,-#_43031b48511fef8b81b32f456a92053ap@chr3:122215917..122215967, -
7.03e-65FFCP PHASE1:Mm9::chr2:143738263..143738267,+#_df90084f72cbd9d7e133a801de0db761p@chr2:143738263..143738267, +
7.03e-65FFCP PHASE2:Mm9::chr2:143738263..143738267,+#_df90084f72cbd9d7e133a801de0db761p@chr2:143738263..143738267, +
2.43e-61FFCP PHASE1:Mm9::chr5:135465906..135465912,+#_e3397b2b7c7422c22cfdca408fe31b0cp@chr5:135465906..135465912, +
2.43e-61FFCP PHASE2:Mm9::chr5:135465906..135465912,+#_e3397b2b7c7422c22cfdca408fe31b0cp@chr5:135465906..135465912, +
5.84e-61FFCP PHASE2:Mm9::chr7:4101973..4101978,-#_b1922694029fc345db5aea588adfed4bp4@Leng9
5.84e-61FFCP PHASE1:Mm9::chr7:4101973..4101978,-#_b1922694029fc345db5aea588adfed4bp4@Leng9
1.29e-60FFCP PHASE2:Mm9::chr7:4101821..4101832,-#_48e4b2385c7109b6805e555a696a06e2p5@Leng9
1.29e-60FFCP PHASE1:Mm9::chr7:4101821..4101832,-#_48e4b2385c7109b6805e555a696a06e2p5@Leng9
5.24e-58FFCP PHASE1:Mm9::chr12:86771033..86771037,-#_aba62ed15d3669a8eba30dc4be302978p@chr12:86771033..86771037, -
5.24e-58FFCP PHASE2:Mm9::chr12:86771033..86771037,-#_aba62ed15d3669a8eba30dc4be302978p@chr12:86771033..86771037, -
6.35e-57FFCP PHASE1:Mm9::chr5:145119593..145119596,+#_25f7bdc0b7f2a73cf16eec6ec95d22a1p@chr5:145119593..145119596, +
6.35e-57FFCP PHASE2:Mm9::chr5:145119593..145119596,+#_25f7bdc0b7f2a73cf16eec6ec95d22a1p@chr5:145119593..145119596, +
8.86e-57FFCP PHASE1:Mm9::chr13:49066571..49066574,-#_38c9fbc95c8d508ff95f0547129a8065p@chr13:49066571..49066574, -
8.86e-57FFCP PHASE2:Mm9::chr13:49066571..49066574,-#_38c9fbc95c8d508ff95f0547129a8065p@chr13:49066571..49066574, -
1.46e-56FFCP PHASE2:Mm9::chr11:96797681..96797709,-#_1dabb16b761ef9a71455f8b9fcdefe1ep@chr11:96797681..96797709, -
1.46e-56FFCP PHASE1:Mm9::chr11:96797681..96797709,-#_1dabb16b761ef9a71455f8b9fcdefe1ep@chr11:96797681..96797709, -
2.19e-56FFCP PHASE1:Mm9::chr18:36576247..36576252,-#_198e3679efa7d9cbd628d4f99305cf1bp@chr18:36576247..36576252, -
2.19e-56FFCP PHASE2:Mm9::chr18:36576247..36576252,-#_198e3679efa7d9cbd628d4f99305cf1bp@chr18:36576247..36576252, -
5.47e-56FFCP PHASE1:Mm9::chr9:66888939..66888949,+#_159d2dd068730768f1bddad58f180c13p@chr9:66888939..66888949, +
5.47e-56FFCP PHASE2:Mm9::chr9:66888939..66888949,+#_159d2dd068730768f1bddad58f180c13p@chr9:66888939..66888949, +
6.45e-56FFCP PHASE2:Mm9::chr17:46693370..46693378,+#_94e47ed8ec969f286b101e06ecd0d547p@chr17:46693370..46693378, +
6.45e-56FFCP PHASE1:Mm9::chr17:46693370..46693378,+#_94e47ed8ec969f286b101e06ecd0d547p@chr17:46693370..46693378, +
1.93e-53FFCP PHASE2:Mm9::chr7:52317191..52317193,+#_4b6ef9fcd4297c790abf6accca71eb3cp@chr7:52317191..52317193, +
1.93e-53FFCP PHASE1:Mm9::chr7:52317191..52317193,+#_4b6ef9fcd4297c790abf6accca71eb3cp@chr7:52317191..52317193, +
2.55e-53FFCP PHASE1:Mm9::chr5:135442713..135442733,+#_e534c60445ad1366e4af67d8ea4ce245p@chr5:135442713..135442733, +
2.55e-53FFCP PHASE2:Mm9::chr5:135442713..135442733,+#_e534c60445ad1366e4af67d8ea4ce245p@chr5:135442713..135442733, +
5.3e-53FFCP PHASE1:Mm9::chr2:38781010..38781017,+#_f71cf93e6c05cac7a934bd4fe163bafcp@chr2:38781010..38781017, +
5.3e-53FFCP PHASE2:Mm9::chr2:38781010..38781017,+#_f71cf93e6c05cac7a934bd4fe163bafcp@chr2:38781010..38781017, +
3.46e-52FFCP PHASE2:Mm9::chr10:80565428..80565433,+#_a30cb2bf18fbdc561cc83e158b6d8a4bp@chr10:80565428..80565433, +
3.46e-52FFCP PHASE1:Mm9::chr10:80565428..80565433,+#_a30cb2bf18fbdc561cc83e158b6d8a4bp@chr10:80565428..80565433, +
7.4e-52FFCP PHASE1:Mm9::chr11:35759012..35759018,+#_23b4b7aa7601904c52c3bf544680c4dep@chr11:35759012..35759018, +
7.4e-52FFCP PHASE2:Mm9::chr11:35759012..35759018,+#_23b4b7aa7601904c52c3bf544680c4dep@chr11:35759012..35759018, +
1.0e-51FFCP PHASE2:Mm9::chr18:66636209..66636215,-#_d572d5bdb9ba96989db871d2004df55dp@chr18:66636209..66636215, -
1.0e-51FFCP PHASE1:Mm9::chr18:66636209..66636215,-#_d572d5bdb9ba96989db871d2004df55dp@chr18:66636209..66636215, -
1.17e-51FFCP PHASE1:Mm9::chr16:78268076..78268083,-#_d5d9517686d3b7fdd53823a313635c4bp@chr16:78268076..78268083, -
1.17e-51FFCP PHASE2:Mm9::chr16:78268076..78268083,-#_d5d9517686d3b7fdd53823a313635c4bp@chr16:78268076..78268083, -
3.1e-50FFCP PHASE1:Hg19::chr16:19661615..19661621,+#_7e6581131c419b311d0470589086ca73p@chr16:19661615..19661621, +
3.1e-50FFCP PHASE2:Hg19::chr6:8446968..8446983,+#_7e6581131c419b311d0470589086ca73p@chr6:8446968..8446983, +
3.1e-50FFCP PHASE2:Hg19::chr2:205036975..205037009,-#_7e6581131c419b311d0470589086ca73p@chr2:205036975..205037009, -
3.1e-50FFCP PHASE1:Hg19::chr3:140054724..140054735,-#_7e6581131c419b311d0470589086ca73p@chr3:140054724..140054735, -
3.1e-50FFCP PHASE1:Hg19::chr5:97747048..97747059,+#_7e6581131c419b311d0470589086ca73p@chr5:97747048..97747059, +
3.1e-50FFCP PHASE2:Hg19::chr3:148164659..148164667,-#_7e6581131c419b311d0470589086ca73p@chr3:148164659..148164667, -
3.1e-50FFCP PHASE2:Hg19::chr3:185823573..185823578,-#_7e6581131c419b311d0470589086ca73p26@ETV5
3.1e-50FFCP PHASE1:Hg19::chr2:19707156..19707203,+#_7e6581131c419b311d0470589086ca73p@chr2:19707156..19707203, +
3.1e-50FFCP PHASE2:Hg19::chr7:137749883..137749887,+#_7e6581131c419b311d0470589086ca73p@chr7:137749883..137749887, +
3.1e-50FFCP PHASE2:Hg19::chr2:127711416..127711419,+#_7e6581131c419b311d0470589086ca73p@chr2:127711416..127711419, +
3.1e-50FFCP PHASE2:Hg19::chr13:46093198..46093203,+#_7e6581131c419b311d0470589086ca73p@chr13:46093198..46093203, +
3.1e-50FFCP PHASE2:Hg19::chr4:157174075..157174084,+#_7e6581131c419b311d0470589086ca73p@chr4:157174075..157174084, +
3.1e-50FFCP PHASE1:Hg19::chr16:55344418..55344442,+#_7e6581131c419b311d0470589086ca73p@chr16:55344418..55344442, +
3.1e-50FFCP PHASE1:Hg19::chr4:157174062..157174071,+#_7e6581131c419b311d0470589086ca73p@chr4:157174062..157174071, +
3.1e-50FFCP PHASE2:Hg19::chr8:128419359..128419367,-#_7e6581131c419b311d0470589086ca73p@chr8:128419359..128419367, -
3.1e-50FFCP PHASE2:Hg19::chr1:118658073..118658082,-#_7e6581131c419b311d0470589086ca73p@chr1:118658073..118658082, -
3.1e-50FFCP PHASE1:Hg19::chr8:128418828..128418839,-#_7e6581131c419b311d0470589086ca73p@chr8:128418828..128418839, -
3.1e-50FFCP PHASE1:Hg19::chr1:78621016..78621042,+#_7e6581131c419b311d0470589086ca73p@chr1:78621016..78621042, +
3.1e-50FFCP PHASE1:Hg19::chr6:372660..372670,-#_7e6581131c419b311d0470589086ca73p@chr6:372660..372670, -
3.1e-50FFCP PHASE1:Hg19::chr7:87232440..87232448,-#_7e6581131c419b311d0470589086ca73p@chr7:87232440..87232448, -
3.1e-50FFCP PHASE1:Hg19::chr1:19522690..19522704,-#_7e6581131c419b311d0470589086ca73p@chr1:19522690..19522704, -
3.1e-50FFCP PHASE2:Hg19::chr8:128259602..128259609,-#_7e6581131c419b311d0470589086ca73p@chr8:128259602..128259609, -
3.1e-50FFCP PHASE2:Hg19::chr3:24797750..24797759,-#_7e6581131c419b311d0470589086ca73p@chr3:24797750..24797759, -
3.1e-50FFCP PHASE2:Hg19::chr13:28541442..28541451,-#_7e6581131c419b311d0470589086ca73p@chr13:28541442..28541451, -

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