Personal tools

Coexpression cluster:C893: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 8: Line 8:
|tf_chipseq_enrich=CEBPB#1051;7:6.19978148675264:1.39459740509258e-05:0.000336530402935453!E2F6#1876;8:4.45969398373101:1.843503537119e-05:0.000419006889908969!FOXA1#3169;4:4.92507544417131:0.00575815054200309:0.0259291805482801!GABPB1#2553;5:3.92649102010121:0.00433797609228731:0.0205849373030303!GTF2F1#2962;7:9.90862512636706:5.7263614460198e-07:2.63925623592614e-05!NR3C1#2908;5:8.31834629509613:0.000133141846723398:0.00174886194566029!POLR2A#5430;9:2.14745317655807:0.00102941289260802:0.00728541391143792!ZBTB7A#51341;9:7.3519093078759:1.59170049418346e-08:1.16411490134473e-06
|tf_chipseq_enrich=CEBPB#1051;7:6.19978148675264:1.39459740509258e-05:0.000336530402935453!E2F6#1876;8:4.45969398373101:1.843503537119e-05:0.000419006889908969!FOXA1#3169;4:4.92507544417131:0.00575815054200309:0.0259291805482801!GABPB1#2553;5:3.92649102010121:0.00433797609228731:0.0205849373030303!GTF2F1#2962;7:9.90862512636706:5.7263614460198e-07:2.63925623592614e-05!NR3C1#2908;5:8.31834629509613:0.000133141846723398:0.00174886194566029!POLR2A#5430;9:2.14745317655807:0.00102941289260802:0.00728541391143792!ZBTB7A#51341;9:7.3519093078759:1.59170049418346e-08:1.16411490134473e-06
|tfbs_overrepresentation=0.379905,0.165882,0.329475,0.136425,0.487545,0.638769,0.123553,0.79935,0.0949833,0.0751516,0.362662,0.535177,0.466136,0.332321,0.383007,0.174443,0.36612,0.266621,0.150322,0.290404,0.465867,0.347332,0.226321,0.258532,0.119603,0.165628,0.505823,0.248219,0.372221,0.254769,0.497451,0.304602,0.0531246,0.503662,0.186593,0.232613,0.141858,0.123445,0.319343,0.187061,0.262412,0.0720324,0.36403,0.4567,0.320656,0.104832,0.109769,0.451673,0.298075,0.0582578,0.394657,0.153891,0.196072,0.253845,0.485667,0.110878,0.288967,0.512016,0.217047,0.284457,0.0857174,0.384611,0.291703,0.210978,0.154936,0.143948,0.728252,0.169439,0.236629,0.422102,0.760425,0.189603,0.244032,0.317093,0.0222609,0.0504791,0.262446,0.125439,0.107638,0.0216001,0.260326,0.537952,0.122158,0.306485,0.644092,0.581213,0.18087,0.505147,0.00252733,0.176677,0.235838,0.141509,0.259722,0.135495,0.234915,0.306911,0.490977,0.393712,0.25323,0.617548,0.162733,0.620845,0.368092,0.107129,0.523781,0.117829,0.187804,0.710009,0.373254,0.609904,0.453858,0.0985633,0.384904,0.0521236,0.273963,0.0978783,0.0597833,0.160517,0.36177,0.23102,0.421387,0.515724,0.364218,0.235903,0.27674,0.00305338,0.248136,0.0437269,0.232332,0.352634,0.168295,0.208122,0.162015,0.0668125,0.331897,0.290508,0.182244,0.156991,0.0958807,0.0118189,0.0667834,0.336046,0.495496,0.398784,0.00695066,0.19387,0.268136,0.231997,0.112335,0.320461,0.0308073,0.372067,0.450068,0.0776445,0.122732,0.312819,0.207929,0.540588,0.147215,0.0978015,0.539398,0.259477,0.310698,0.381069,0.616518,0.305161,0.115353,0.335504,0.116243,0.674469,0.448004,0.358884,0.845983,0.153773,0.22114,0.246625,0.364685,0.452289,0.445497,0.103138,0.404846,0.324259,0.0799857,0.308193,0.205269,0.315846,0.454723,0.115749,0.228576,0.435542,0.288225,0.129254,0.325324,0.183848,0.301358,0.134676,0.216866,0.170174,0.189529,0.294254,0.244693,0.17047,0.0896732,0.171015,0.356037,0.593807,0.616679,0.389876,0.499999,0.445315,0.131385,0.281536,0.321205,0.301899,0.675159,0.426262,0.416147,0.273288,0.17733,0.278242,0.368216,0.752859,0.398917,0.409466,0.205617,0.333772,0.361394,0.23638,0.170616,0.16914,0.112866,0.4278,0.120343,0.212398,0.261042,0.254337,0.135096,0.599827,0.414677,0.515899,0.453603,0.0102694,0.267103,0.229137,0.309856,0.356902,0.225141,0.298939,0.753277,0.311599,0.405286,0.458984,0.460135,0.266199,0.266349,0.406605,0.288456,0.491561,0.194561,0.268292,0.1745,0.438689,0.414414,0.337164,0.100007,0.22402,0.224264,0.251548,0.314053,0.209873,0.624183,0.178112,0.586128,0.529949,0.237927,0.10985,0.341892,0.928484,0.722452,0.0190931,0.583663,0.106666,0.595101,6.65013e-08,0.706481,0.572048,0.597321,0.830246,0.409439,0.670395,0.868462,0.700182,0.779492,0.698654,0.668072,0.00931951,0.614105,0.645336,0.790175,0.78106,0.267213,0.756327,0.46313,0.741272,0.452085,0.808876,0.295002,0.70044,0.522392,0.235076,0.758108,0.845311,0.0149326,0.895062,0.889934,0.750883,0.800462,0.0515667,0.584123,0.621799,0.65962,0.860829,0.681223,0.531812,0.350058,0.0627828,0.632518,0.678224,0.924669,0.644668,0.83189,0.924125,0.801657,0.64636,0.856734,0.823966,0.75453,0.924645,0.940187,0.453399,0.0796735,0.151135,0.0100468,0.619475,0.554881,0.459973,0.720683,0.899843,0.612555,0.34158,0.877279,0.885104,0.890841,0.575816,0.629198,0.853123,0.414137,0.187965,0.203643,0.458246,0.934378,0.62596,0.0501964,0.215959,0.428159,0.906941,0.90982,0.831839,0.522931,0.0276604,0.150963,0.129311,0.207912,0.541692,0.00157665,0.00621081,0.876606,0.649146,0.716808,0.133313,0.27311,0.695325,0.264835,0.623702,0.0297989,0.50032,0.540073,0.70766,0.483435,0.399451,0.014586,0.488454,0.861547,0.805519,0.886944,3.87884e-11,0.706059,0.374554,0.376154,0.767978,0.757252,0.26375,0.842473,0.58188,0.391668,0.133308,0.357482,0.593519,0.35231,0.267558,0.90656,0.647652,0.63385,0.717356,0.666547,0.665423,0.146093,0.877297,0.891392,0.633904,0.59893,0.737186,0.536776,0.790368,0.801916,0.742357,0.846759,0.604988,0.499854,0.386875,0.957683,0.821714,0.609745,0.711558,0.0972562,0.628964,0.367837,0.112432,0.88975,0.406484,0.558571,0.0533863,0.54746,0.467603,0.244286,0.168254,0.892826,0.947396,0.721936,0.902278,0.725223,0.855354,0.788897,0.592665,0.082403,0.680237,0.195042,0.157921,0.473551,0.216218,0.162951,0.373485,0.531611,0.494987,0.827083,0.00910423,0.47205,0.29961,0.084897,0.125012,0.66188,0.333468,0.352452,0.287616,0.616277,0.176796,0.763267,0.0527744,0.662758,0.626433,0.77346,0.133067,0.427392,0.305866,0.282022,0.246314,0.238193,0.406937,0.288143,0.125904,0.0116264,0.32684,0.339579,0.507652,0.475759,0.720751,0.14256,0.228642,0.187038,0.453028,0.298062,0.524321,0.703005,0.479486,0.346481,0.000481966,0.137686,0.145214,0.79043,0.336393,0.440086,0.457632,0.426628,0.240557,0.259353,0.0333885,0.529873,0.287981,0.619307,0.0143703,0.435843,0.366423,0.50994,0.0875223,0.345012,0.127712,0.149004,0.504834,0.392756,0.220778,0.264715,0.407611,0.326688,0.248037,0.158248,0.630812,0.887822,0.358005,0.0431634,0.184427,0.510223,0.526429,0.22169,0.210572,0.411099,0.474863,0.155833,0.21615,0.159259,0.120131,0.100087,0.112146,0.585964,0.428847,0.48998,0.139629,0.114332,0.404057,0.0959729,0.723796,0.524638,0.113797,0.16848,0.0830553,0.324265,0.292348,0.29508,0.23087,0.0833765,0.0351464,0.374024,0.112075,0.24008,0.156166,0.372926,0.584327,0.520077,0.468653,0.343965,0.191898,0.555981,0.000640829,0.211428,0.433345,0.226072,0.454063,0.705997,0.380873,0.0776234,0.422547,0.365324,0.24384,0.670902,0.6377,0.135303,0.25849,0.82953,0.348029,0.214787,0.293114,0.338231,0.344789,0.0262785,0.832512,0.147592,0.269541,0.142724,0.174255,0.209861,0.255464,0.372942,0.098628,0.206442,0.62221,0.982366,0.959041,0.520448,0.641038,0.316704,0.473416,0.444521,0.000189495,0.16296,0.136086,0.190539,0.17172,0.439136,0.290921,0.199067,0.532484,0.643771,0.102996,0.331469,0.438676,0.197646,6.36966e-07,0.500293,0.522141,0.29093,0.188743,0.292051,0.141017,0.260867,0.498927,0.210037,0.130804,0.295543,0.196359,0.536623,0.393364,0.108866,0.347427,0.129025,0.15318,0.305064,0.253746,0.433211,0.282957,0.528444,0.161886,0.551069,0.211069,0.637324,0.391002,0.478226,0.522285,0.274897,0.0327656,0.434353,0.713726,0.38933,0.176485,0.471182,0.38278,0.0628349,0.398405,0.200538,0.251141,0.170045,0.373446,0.38724,0.264621,0.396714,0.428823,0.475718,0.357753,0.540158,0.580594,0.639201,0.316272,0.231141,0.701186,0.302478,0.301311,0.461915,0.438026,0.258402,0.60144,0.576519,0.365126,0.270455,0.590817,0.279874,0.302298,0.0747253,0.423883,0.248067,0.928787,0.421922,0.4659,0.224837,0.458553,0.399346,0.674122,0.171188,0.167013,0.573593,0.445376,0.522209,0.545373,0.0746134,0.945087,0.104396,4.41091e-05,0.343975,0.124796,0.349674,0.803011,0.749083,0.832749,0.791861,0.546036,0.682948,0.823969,0.750025,0.496287,0.832531,0.14203,0.780739,0.739634,0.07376,0.762905,0.482989,0.598083,0.50585,0.190706,0.773427,0.596376,0.0197457,0.827364,0.382674,0.0121644,0.000658536,0.538296,0.0717494,0.944192,0.769079,0.633899,0.162894,0.910048,0.202282,0.64068,0.416136,0.286444,0.638875,0.472603,0.580643,0.70761,0.849808,0.591843,0.529619,0.56686,0.827149,0.774104,0.00274772,0.26489,0.410672,0.40492,0.0143318,0.608868,0.211452,0.754179,0.489127,0.0479589,0.485869,0.779309,0.818991,0.494538,0.488946,0.49864,0.65774,0.589099,0.810844,0.724355,0.425327,0.39901,0.366863,0.796642,0.261599,0.677788,0.146248,0.415361,0.5445,0.319052,0.633308,0.0406582,0.677777,0.451482,0.630297,0.47592,0.0275676,0.79296,0.886979,0.688628,0.959331,0.711745,0.0025918,0.769965,0.891199,0.359663,0.900971,0.529155,0.801458,0.801122,0.844896,0.000260525,0.0171205,0.497193,0.835818,0.361435,0.965192,0.421792,0.483823,0.229876,0.680622,0.859919,0.438891,0.703152,0.754164,0.891895,0.210744,0.744541,0.668103,0.774,0.741759,0.554076,0.494664,0.616391,0.75678,0.83052,0.726725,0.61947,0.192138,0.665579,0.562983,0.751633,0.666697,0.662424,0.871887,0.769132,0.0649621,0.57975,0.76543,0.548033,0.8785,0.525869,0.881675,0.482171,0.471539,0.845795,0.146606,0.667668,0.842298,0.632112,0.452975,0.853582,0.783534,0.616205,0.747678,0.619062,0.76693,0.580284,0.385616,0.71215,0.483774,0.93985,0.769732,0.702958,0.89506,0.656834,0.951119,0.498323,0.441318,0.21597,0.621861,0.498105,0.0977699,0.467889,0.59289,0.465133,0.200614,0.602747,0.412715,0.470602,0.413744,0.524403,0.503232,0.24661,0.259678,0.420165,0.5818,0.759777,0.587365,0.502321,0.831057,0.447445,0.475616,0.527097,0.53086,0.714696,0.672452,0.521806,0.485334,0.462243,0.326222,0.486977,0.0946253,0.254626,0.327893,0.448409,0.537875,0.624757,0.235347,0.344033,0.503902,0.574041,0.529704,0.188703,0.504091,0.605432,0.302353,0.37651,0.54245,0.411826,0.541606,0.425621,0.111096,0.18548,0.148563,0.130525,0.608967,0.49107,0.725948,0.396522,0.318983,0.267772,0.291371,0.168254,0.51798,0.40407,0.52603,0.478764,0.328268,0.594172,0.668525,0.449854,0.40705,0.590314,0.387463,0.520157,0.327588,0.457295,0.459324,0.201671,0.5923,0.597634,0.495225,0.51408,0.502377,0.368078,0.474502,0.576606,0.309128,0.533737,0.571519,0.434445,0.488829,0.363467,0.482434,0.561852,0.399782,0.343945,0.224236,0.530537,0.432612,0.44213,0.263525,0.492092,0.672069,0.628217,0.522084,0.226979,0.491955,0.287253,0.012244,0.152802,0.38832,0.216263,0.117262,0.0123019,0.685459,0.597602,0.50945,0.46408,0.549887,0.467691,0.22458,0.266409,0.180355,0.322962,0.179632,0.282128,0.186072,0.211757,0.338622,0.29306,0.126579,0.187708,0.245457,0.106235,0.352719,0.496388,0.650742,0.637062,0.721601,0.367773,0.599943,0.588096,0.488202,0.538989,0.654598,0.584019,0.443905,0.632399,0.601983,0.345488,0.408688,0.499886,0.486539,0.637365,0.554869,0.692656,0.308763,0.521884,0.532407,0.307503,0.478305,0.470512,0.629431,0.631734,0.578048,0.41706,0.533176,0.255282,0.696023,0.53587,0.502814,0.260932,0.236266,0.6812,0.431685,0.404852,0.613018,0.198522,0.611947,0.273479,0.530083,0.44039,0.401506,0.517565,0.582826,0.499348,0.739615
|tfbs_overrepresentation=0.379905,0.165882,0.329475,0.136425,0.487545,0.638769,0.123553,0.79935,0.0949833,0.0751516,0.362662,0.535177,0.466136,0.332321,0.383007,0.174443,0.36612,0.266621,0.150322,0.290404,0.465867,0.347332,0.226321,0.258532,0.119603,0.165628,0.505823,0.248219,0.372221,0.254769,0.497451,0.304602,0.0531246,0.503662,0.186593,0.232613,0.141858,0.123445,0.319343,0.187061,0.262412,0.0720324,0.36403,0.4567,0.320656,0.104832,0.109769,0.451673,0.298075,0.0582578,0.394657,0.153891,0.196072,0.253845,0.485667,0.110878,0.288967,0.512016,0.217047,0.284457,0.0857174,0.384611,0.291703,0.210978,0.154936,0.143948,0.728252,0.169439,0.236629,0.422102,0.760425,0.189603,0.244032,0.317093,0.0222609,0.0504791,0.262446,0.125439,0.107638,0.0216001,0.260326,0.537952,0.122158,0.306485,0.644092,0.581213,0.18087,0.505147,0.00252733,0.176677,0.235838,0.141509,0.259722,0.135495,0.234915,0.306911,0.490977,0.393712,0.25323,0.617548,0.162733,0.620845,0.368092,0.107129,0.523781,0.117829,0.187804,0.710009,0.373254,0.609904,0.453858,0.0985633,0.384904,0.0521236,0.273963,0.0978783,0.0597833,0.160517,0.36177,0.23102,0.421387,0.515724,0.364218,0.235903,0.27674,0.00305338,0.248136,0.0437269,0.232332,0.352634,0.168295,0.208122,0.162015,0.0668125,0.331897,0.290508,0.182244,0.156991,0.0958807,0.0118189,0.0667834,0.336046,0.495496,0.398784,0.00695066,0.19387,0.268136,0.231997,0.112335,0.320461,0.0308073,0.372067,0.450068,0.0776445,0.122732,0.312819,0.207929,0.540588,0.147215,0.0978015,0.539398,0.259477,0.310698,0.381069,0.616518,0.305161,0.115353,0.335504,0.116243,0.674469,0.448004,0.358884,0.845983,0.153773,0.22114,0.246625,0.364685,0.452289,0.445497,0.103138,0.404846,0.324259,0.0799857,0.308193,0.205269,0.315846,0.454723,0.115749,0.228576,0.435542,0.288225,0.129254,0.325324,0.183848,0.301358,0.134676,0.216866,0.170174,0.189529,0.294254,0.244693,0.17047,0.0896732,0.171015,0.356037,0.593807,0.616679,0.389876,0.499999,0.445315,0.131385,0.281536,0.321205,0.301899,0.675159,0.426262,0.416147,0.273288,0.17733,0.278242,0.368216,0.752859,0.398917,0.409466,0.205617,0.333772,0.361394,0.23638,0.170616,0.16914,0.112866,0.4278,0.120343,0.212398,0.261042,0.254337,0.135096,0.599827,0.414677,0.515899,0.453603,0.0102694,0.267103,0.229137,0.309856,0.356902,0.225141,0.298939,0.753277,0.311599,0.405286,0.458984,0.460135,0.266199,0.266349,0.406605,0.288456,0.491561,0.194561,0.268292,0.1745,0.438689,0.414414,0.337164,0.100007,0.22402,0.224264,0.251548,0.314053,0.209873,0.624183,0.178112,0.586128,0.529949,0.237927,0.10985,0.341892,0.928484,0.722452,0.0190931,0.583663,0.106666,0.595101,6.65013e-08,0.706481,0.572048,0.597321,0.830246,0.409439,0.670395,0.868462,0.700182,0.779492,0.698654,0.668072,0.00931951,0.614105,0.645336,0.790175,0.78106,0.267213,0.756327,0.46313,0.741272,0.452085,0.808876,0.295002,0.70044,0.522392,0.235076,0.758108,0.845311,0.0149326,0.895062,0.889934,0.750883,0.800462,0.0515667,0.584123,0.621799,0.65962,0.860829,0.681223,0.531812,0.350058,0.0627828,0.632518,0.678224,0.924669,0.644668,0.83189,0.924125,0.801657,0.64636,0.856734,0.823966,0.75453,0.924645,0.940187,0.453399,0.0796735,0.151135,0.0100468,0.619475,0.554881,0.459973,0.720683,0.899843,0.612555,0.34158,0.877279,0.885104,0.890841,0.575816,0.629198,0.853123,0.414137,0.187965,0.203643,0.458246,0.934378,0.62596,0.0501964,0.215959,0.428159,0.906941,0.90982,0.831839,0.522931,0.0276604,0.150963,0.129311,0.207912,0.541692,0.00157665,0.00621081,0.876606,0.649146,0.716808,0.133313,0.27311,0.695325,0.264835,0.623702,0.0297989,0.50032,0.540073,0.70766,0.483435,0.399451,0.014586,0.488454,0.861547,0.805519,0.886944,3.87884e-11,0.706059,0.374554,0.376154,0.767978,0.757252,0.26375,0.842473,0.58188,0.391668,0.133308,0.357482,0.593519,0.35231,0.267558,0.90656,0.647652,0.63385,0.717356,0.666547,0.665423,0.146093,0.877297,0.891392,0.633904,0.59893,0.737186,0.536776,0.790368,0.801916,0.742357,0.846759,0.604988,0.499854,0.386875,0.957683,0.821714,0.609745,0.711558,0.0972562,0.628964,0.367837,0.112432,0.88975,0.406484,0.558571,0.0533863,0.54746,0.467603,0.244286,0.168254,0.892826,0.947396,0.721936,0.902278,0.725223,0.855354,0.788897,0.592665,0.082403,0.680237,0.195042,0.157921,0.473551,0.216218,0.162951,0.373485,0.531611,0.494987,0.827083,0.00910423,0.47205,0.29961,0.084897,0.125012,0.66188,0.333468,0.352452,0.287616,0.616277,0.176796,0.763267,0.0527744,0.662758,0.626433,0.77346,0.133067,0.427392,0.305866,0.282022,0.246314,0.238193,0.406937,0.288143,0.125904,0.0116264,0.32684,0.339579,0.507652,0.475759,0.720751,0.14256,0.228642,0.187038,0.453028,0.298062,0.524321,0.703005,0.479486,0.346481,0.000481966,0.137686,0.145214,0.79043,0.336393,0.440086,0.457632,0.426628,0.240557,0.259353,0.0333885,0.529873,0.287981,0.619307,0.0143703,0.435843,0.366423,0.50994,0.0875223,0.345012,0.127712,0.149004,0.504834,0.392756,0.220778,0.264715,0.407611,0.326688,0.248037,0.158248,0.630812,0.887822,0.358005,0.0431634,0.184427,0.510223,0.526429,0.22169,0.210572,0.411099,0.474863,0.155833,0.21615,0.159259,0.120131,0.100087,0.112146,0.585964,0.428847,0.48998,0.139629,0.114332,0.404057,0.0959729,0.723796,0.524638,0.113797,0.16848,0.0830553,0.324265,0.292348,0.29508,0.23087,0.0833765,0.0351464,0.374024,0.112075,0.24008,0.156166,0.372926,0.584327,0.520077,0.468653,0.343965,0.191898,0.555981,0.000640829,0.211428,0.433345,0.226072,0.454063,0.705997,0.380873,0.0776234,0.422547,0.365324,0.24384,0.670902,0.6377,0.135303,0.25849,0.82953,0.348029,0.214787,0.293114,0.338231,0.344789,0.0262785,0.832512,0.147592,0.269541,0.142724,0.174255,0.209861,0.255464,0.372942,0.098628,0.206442,0.62221,0.982366,0.959041,0.520448,0.641038,0.316704,0.473416,0.444521,0.000189495,0.16296,0.136086,0.190539,0.17172,0.439136,0.290921,0.199067,0.532484,0.643771,0.102996,0.331469,0.438676,0.197646,6.36966e-07,0.500293,0.522141,0.29093,0.188743,0.292051,0.141017,0.260867,0.498927,0.210037,0.130804,0.295543,0.196359,0.536623,0.393364,0.108866,0.347427,0.129025,0.15318,0.305064,0.253746,0.433211,0.282957,0.528444,0.161886,0.551069,0.211069,0.637324,0.391002,0.478226,0.522285,0.274897,0.0327656,0.434353,0.713726,0.38933,0.176485,0.471182,0.38278,0.0628349,0.398405,0.200538,0.251141,0.170045,0.373446,0.38724,0.264621,0.396714,0.428823,0.475718,0.357753,0.540158,0.580594,0.639201,0.316272,0.231141,0.701186,0.302478,0.301311,0.461915,0.438026,0.258402,0.60144,0.576519,0.365126,0.270455,0.590817,0.279874,0.302298,0.0747253,0.423883,0.248067,0.928787,0.421922,0.4659,0.224837,0.458553,0.399346,0.674122,0.171188,0.167013,0.573593,0.445376,0.522209,0.545373,0.0746134,0.945087,0.104396,4.41091e-05,0.343975,0.124796,0.349674,0.803011,0.749083,0.832749,0.791861,0.546036,0.682948,0.823969,0.750025,0.496287,0.832531,0.14203,0.780739,0.739634,0.07376,0.762905,0.482989,0.598083,0.50585,0.190706,0.773427,0.596376,0.0197457,0.827364,0.382674,0.0121644,0.000658536,0.538296,0.0717494,0.944192,0.769079,0.633899,0.162894,0.910048,0.202282,0.64068,0.416136,0.286444,0.638875,0.472603,0.580643,0.70761,0.849808,0.591843,0.529619,0.56686,0.827149,0.774104,0.00274772,0.26489,0.410672,0.40492,0.0143318,0.608868,0.211452,0.754179,0.489127,0.0479589,0.485869,0.779309,0.818991,0.494538,0.488946,0.49864,0.65774,0.589099,0.810844,0.724355,0.425327,0.39901,0.366863,0.796642,0.261599,0.677788,0.146248,0.415361,0.5445,0.319052,0.633308,0.0406582,0.677777,0.451482,0.630297,0.47592,0.0275676,0.79296,0.886979,0.688628,0.959331,0.711745,0.0025918,0.769965,0.891199,0.359663,0.900971,0.529155,0.801458,0.801122,0.844896,0.000260525,0.0171205,0.497193,0.835818,0.361435,0.965192,0.421792,0.483823,0.229876,0.680622,0.859919,0.438891,0.703152,0.754164,0.891895,0.210744,0.744541,0.668103,0.774,0.741759,0.554076,0.494664,0.616391,0.75678,0.83052,0.726725,0.61947,0.192138,0.665579,0.562983,0.751633,0.666697,0.662424,0.871887,0.769132,0.0649621,0.57975,0.76543,0.548033,0.8785,0.525869,0.881675,0.482171,0.471539,0.845795,0.146606,0.667668,0.842298,0.632112,0.452975,0.853582,0.783534,0.616205,0.747678,0.619062,0.76693,0.580284,0.385616,0.71215,0.483774,0.93985,0.769732,0.702958,0.89506,0.656834,0.951119,0.498323,0.441318,0.21597,0.621861,0.498105,0.0977699,0.467889,0.59289,0.465133,0.200614,0.602747,0.412715,0.470602,0.413744,0.524403,0.503232,0.24661,0.259678,0.420165,0.5818,0.759777,0.587365,0.502321,0.831057,0.447445,0.475616,0.527097,0.53086,0.714696,0.672452,0.521806,0.485334,0.462243,0.326222,0.486977,0.0946253,0.254626,0.327893,0.448409,0.537875,0.624757,0.235347,0.344033,0.503902,0.574041,0.529704,0.188703,0.504091,0.605432,0.302353,0.37651,0.54245,0.411826,0.541606,0.425621,0.111096,0.18548,0.148563,0.130525,0.608967,0.49107,0.725948,0.396522,0.318983,0.267772,0.291371,0.168254,0.51798,0.40407,0.52603,0.478764,0.328268,0.594172,0.668525,0.449854,0.40705,0.590314,0.387463,0.520157,0.327588,0.457295,0.459324,0.201671,0.5923,0.597634,0.495225,0.51408,0.502377,0.368078,0.474502,0.576606,0.309128,0.533737,0.571519,0.434445,0.488829,0.363467,0.482434,0.561852,0.399782,0.343945,0.224236,0.530537,0.432612,0.44213,0.263525,0.492092,0.672069,0.628217,0.522084,0.226979,0.491955,0.287253,0.012244,0.152802,0.38832,0.216263,0.117262,0.0123019,0.685459,0.597602,0.50945,0.46408,0.549887,0.467691,0.22458,0.266409,0.180355,0.322962,0.179632,0.282128,0.186072,0.211757,0.338622,0.29306,0.126579,0.187708,0.245457,0.106235,0.352719,0.496388,0.650742,0.637062,0.721601,0.367773,0.599943,0.588096,0.488202,0.538989,0.654598,0.584019,0.443905,0.632399,0.601983,0.345488,0.408688,0.499886,0.486539,0.637365,0.554869,0.692656,0.308763,0.521884,0.532407,0.307503,0.478305,0.470512,0.629431,0.631734,0.578048,0.41706,0.533176,0.255282,0.696023,0.53587,0.502814,0.260932,0.236266,0.6812,0.431685,0.404852,0.613018,0.198522,0.611947,0.273479,0.530083,0.44039,0.401506,0.517565,0.582826,0.499348,0.739615
|tfbs_overrepresentation_for_novel_motifs=0.83884,6.24914,0.305225,0.440628,0.267236,0.439064,1.27477,0.164003,0.161941,0.840518,1.05643,0.553754,1.88676,0.500805,0.266007,0.287179,0.728104,0.218596,0.842338,0.473089,0.823689,0.141777,1.10261,0.262652,0.347482,1.41015,1.19851,1.09816,0.270022,2.24764,0.389837,0.764231,0.190489,0.406122,4.46061,0.995641,0.233607,0.440165,0.611187,1.42292,0.235191,0.374544,0.0412835,0.731232,0.781461,0.333541,1.277,1.82528,0.0372068,0.743836,0.589559,0.524278,1.39289,0.839846,0.99088,0.503626,0.273964,0.472204,1.12004,0.47124,0.804523,1.28186,0.488493,0.700946,0.532513,0.667267,1.07848,1.44489,0.754027,1.28328,2.55376,0.168734,0.253077,0.988898,3.22324,4.64746,2.29959,0.684401,0.750836,0.341765,0.141333,0.699894,0.532172,0.166331,0.937974,4.89087,0.214403,0.320664,0.614883,1.54397,1.17124,0.911274,0.78075,0.196636,0.267904,0.207949,0.136404,0.82268,0.619373,4.88219,0.214313,0.775192,0.817185,0.731699,0.656016,1.84568,0.716172,0.49749,0.347247,0.252953,0.315525,0.814459,0.300169,0.41935,1.12352,0.232218,2.30689,0.388709,0.664981,0.199081,0.980696,0.612519,0.436445,0.543065,1.23356,0.685145,0.50576,0.785662,1.02292,1.13275,0.911957,0.39253,1.03718,0.539846,1.18405,1.06336,0.384215,0.430179,1.14186,1.99816,1.59626,1.10478,0.507423,0.819206,0.657732,0.464114,0.641461,1.83907,0.37143,0.193834,1.3062,2.39813,0.912334,2.10954,0.514733,1.31376,0.599133,0.254737,0.347536,1.54842,1.10357,0.894035,0.750062,3.2681,0.673453,2.26448,0.183544,0.510589,0.100451
}}
}}

Revision as of 14:32, 26 November 2012


Full id: C893_osteoclastoma_Urothelial_tubular_nonsmall_Mesenchymal_Renal_hepatic



Phase1 CAGE Peaks

Hg19::chr12:47473475..47473484,-p9@AMIGO2
Hg19::chr12:47473520..47473544,-p3@AMIGO2
Hg19::chr12:47473557..47473568,-p8@AMIGO2
Hg19::chr12:47473642..47473653,-p7@AMIGO2
Hg19::chr12:47473707..47473757,-p1@AMIGO2
Hg19::chr12:47473898..47473903,-p11@AMIGO2
Hg19::chr12:47473904..47473917,-p6@AMIGO2
Hg19::chr12:47473920..47473939,-p5@AMIGO2
Hg19::chr12:47474192..47474251,-p4@AMIGO2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen
epithelial cell1.31e-12253
endo-epithelial cell1.38e-1142
endodermal cell6.61e-0858
embryonic cell1.09e-07250
kidney tubule cell4.43e-0710
nephron tubule epithelial cell4.43e-0710
Uber Anatomy
Ontology termp-valuen
trunk2.37e-13199
organism subdivision2.96e-13264
anatomical space9.26e-0995
subdivision of trunk1.72e-08112
immaterial anatomical entity4.50e-08117
female organism4.80e-0841
body cavity precursor8.96e-0854
multi-tissue structure1.19e-07342
epithelial bud1.65e-0737
endo-epithelium3.20e-0782
body cavity4.12e-0746
cell layer4.41e-07309
nephron tubule epithelium4.43e-0710
epithelial tube5.15e-07117
reproductive structure5.91e-0759
reproductive system5.91e-0759
epithelial fold8.62e-0747
renal system9.24e-0748
female reproductive organ9.85e-0737
female reproductive system9.85e-0737
Disease
Ontology termp-valuen
female reproductive organ cancer2.59e-1127
reproductive organ cancer9.75e-1129
ovarian cancer1.44e-0714


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
CEBPB#105176.199781486752641.39459740509258e-050.000336530402935453
E2F6#187684.459693983731011.843503537119e-050.000419006889908969
FOXA1#316944.925075444171310.005758150542003090.0259291805482801
GABPB1#255353.926491020101210.004337976092287310.0205849373030303
GTF2F1#296279.908625126367065.7263614460198e-072.63925623592614e-05
NR3C1#290858.318346295096130.0001331418467233980.00174886194566029
POLR2A#543092.147453176558070.001029412892608020.00728541391143792
ZBTB7A#5134197.35190930787591.59170049418346e-081.16411490134473e-06



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.