FFCP PHASE1:Mm9::chr13:101386892..101386936,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=218518|HGNC=|MCL_coexpression_id=12|UniProt=Q3UZP0,E9Q1T5,A1BQX3,A1BQX5|association_with_transcript=0bp_to_ENSMUST00000022137,ENSMUST00000163163,NM_001038602,NM_178410,uc007rra.2,uc007rrb.2,uc011zdz.1_5end|description=CAGE_peak_1_at_Marveld2_5end|id=chr13:101386892..101386936,-|ontology_enrichment_celltype=CL:0000066!9.53e-08!25;CL:0002563!6.17e-07!9;CL:0002251!6.17e-07!9|ontology_enrichment_celltype_v019_2=CL:0000066,3.43e-09,25;CL:0002563,1.74e-07,9;CL:0002251,1.74e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!3.25e-23!130;UBERON:0000925!3.25e-23!130;UBERON:0006595!3.25e-23!130;UBERON:0001007!9.63e-23!128;UBERON:0001555!9.63e-23!128;UBERON:0007026!9.63e-23!128;UBERON:0000160!1.05e-22!43;UBERON:0005409!3.40e-22!59;UBERON:0004921!2.00e-21!126;UBERON:0004185!2.00e-21!126;UBERON:0000344!1.34e-10!15;UBERON:0000466!1.75e-09!79;UBERON:0001242!2.48e-09!13;UBERON:0000060!2.48e-09!13;UBERON:0001262!2.48e-09!13;UBERON:0004786!2.48e-09!13;UBERON:0004923!6.79e-08!24;UBERON:0002108!7.72e-08!16;UBERON:0005177!1.65e-07!85;UBERON:0000485!2.30e-07!11;UBERON:0000077!3.18e-07!97;UBERON:0003350!6.17e-07!9;UBERON:0004808!6.17e-07!9;UBERON:0001277!6.17e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000160,8.18e-20,31;UBERON:0005409,8.03e-18,47;UBERON:0004119,4.98e-17,118;UBERON:0000925,4.98e-17,118;UBERON:0006595,4.98e-17,118;UBERON:0001007,1.35e-16,116;UBERON:0001555,1.35e-16,116;UBERON:0007026,1.35e-16,116;UBERON:0004921,2.14e-15,114;UBERON:0000344,1.61e-11,15;UBERON:0001242,4.01e-10,13;UBERON:0001262,4.01e-10,13;UBERON:0004786,4.01e-10,13;UBERON:0005177,5.67e-10,79;UBERON:0000485,5.86e-08,11;UBERON:0004923,1.13e-07,24;UBERON:0003350,1.74e-07,9;UBERON:0004808,1.74e-07,9;UBERON:0001277,1.74e-07,9;UBERON:0002100,2.80e-07,90|phase1_expression=4.32401887182944,24.0793031271159,26.8449551239826,19.660173734944,22.5403078475856,14.6054966563344,13.315920513945,0.129123323441576,0.84473233291,0,1.02730780935303,0.0797721589953364,2.05440875917447,0.0874204024189974,0,2.02475267389826,0.699561878128147,6.62470547252299,6.30726394586398,5.51706547337439,2.89147186513637,0,0,14.5593104742,14.2233754261645,20.0981187440257,15.5074318617267,15.7293999860699,17.29213117053,11.8454160987167,14.6342137032501,2.54012269383853,0,0,9.24325183204079,8.14549762256613,10.4126371693808,0,0,0.523523743973798,0.588231488031014,1.36609096991689,1.45653105909346,0,0,0,0,0,0,0,0.139986421625363,0,5.03347818173209,2.17608642603403,2.01656279485478,0,0,0,0.606949382578793,0.528990979272033,0.633831403506179,0,0,0,0,0,0,0,0,0,0,0.571301968807607,0,0.122490799214954,0,0.919218786610021,0,0.510749352340751,0.153606533256243,0.527545150920775,1.28082701043374,0.52091337055676,0.279182999001381,0.56276261003168,0.15279824777681,0.294628585473668,0,0,0.075726193333184,0.0755715601067855,3.47837386442013,0.860423876981386,8.15965600449301,3.77792234146472,2.59910566979068,1.79210754838934,2.52799956237153,0,0,0,5.91542363062058,0,0,0,7.57718643539249,10.1343946190039,8.59391556525132,3.53970027129086,1.29468941823586,0.148442139064825,0.346970653532272,0.304465478312141,1.15307748628029,0,0.117588707135705,0,9.88779870937496,0.144599356919912,0.884610551949874,0.323533699894818,0.220841518460394,0.484875253135222,9.31958806090611,3.80615036115011,6.28340120440365,10.9846533739694,0.479260498023681,0.599902730993408,0.635351135365324,0.449371918214468,0,0.251308704225729,0.347648640384553,0.255715457330331,0.20778804455956,0.162241263067758,2.54598409625791,1.99051152976149,6.31806896084187,4.8401626853889,0.390361328888111,0.459804208866946,1.0803727788321,0.90422890701429,0.816437989815934,0.2562274405697,0.655912071918102,2.32833033665114,0.431135985865684,0.756424320671277,0.703804496655795,0.876782929710299,0.556094498451196,1.74126083261083,1.64625709126355,0,0,0.772043721344145,1.13665399758237,0.414251545071004,0.234526059981096,0.540186184383045,0.946978942340841,0,0.308534225774757,0.465067889500816,0,0.700592054203017,0.822799249567402,0.985004784474571,0.162137619091711,0,0.439100230582101,0.134206418760372,0,0.102904612379284,9.91256348951394,10.3135720998782,1.70630600428187,4.41249676534833,7.86091514064769,8.87407508342707,9.11749979763968,12.1744400712038,12.8122846617018,11.0348299665087,10.0534083520108,12.5342577385925,11.1129529657898,12.5834717211591,14.6973873914792,11.1519113022446,3.60369011810855,2.97046132785295,1.1270773567308,3.25842124552503,4.46090720485539,5.61086559122549,5.1853960441891,3.83786384746966,5.33795674660674,3.70191491765402,7.11486305009157,1.16791574001266,0.786235980452812,2.69834534861824,2.23146133527353,3.37648023653384,3.56476192493988,3.74004978686054,5.5125977103512,7.13859674289012,4.31304619582064,4.09355042435354,7.80094182786401,4.04126204715379,5.38192240565737,4.82443521363367,7.02062122633098,1.32643988239339,1.79261474086228,3.39490171550376,2.11221223459652,3.01511263395268,1.90434912708811,5.85400943573396,2.04925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| ||
|EntrezGene=218518 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt=Q3UZP0,E9Q1T5,A1BQX3,A1BQX5 | |||
|association_with_transcript=0bp_to_ENSMUST00000022137,ENSMUST00000163163,NM_001038602,NM_178410,uc007rra.2,uc007rrb.2,uc011zdz.1_5end | |||
|description=CAGE_peak_1_at_Marveld2_5end | |||
|id=chr13:101386892..101386936,- | |||
|ontology_enrichment_celltype=CL:0000066!9.53e-08!25;CL:0002563!6.17e-07!9;CL:0002251!6.17e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.43e-09,25;CL:0002563,1.74e-07,9;CL:0002251,1.74e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!3.25e-23!130;UBERON:0000925!3.25e-23!130;UBERON:0006595!3.25e-23!130;UBERON:0001007!9.63e-23!128;UBERON:0001555!9.63e-23!128;UBERON:0007026!9.63e-23!128;UBERON:0000160!1.05e-22!43;UBERON:0005409!3.40e-22!59;UBERON:0004921!2.00e-21!126;UBERON:0004185!2.00e-21!126;UBERON:0000344!1.34e-10!15;UBERON:0000466!1.75e-09!79;UBERON:0001242!2.48e-09!13;UBERON:0000060!2.48e-09!13;UBERON:0001262!2.48e-09!13;UBERON:0004786!2.48e-09!13;UBERON:0004923!6.79e-08!24;UBERON:0002108!7.72e-08!16;UBERON:0005177!1.65e-07!85;UBERON:0000485!2.30e-07!11;UBERON:0000077!3.18e-07!97;UBERON:0003350!6.17e-07!9;UBERON:0004808!6.17e-07!9;UBERON:0001277!6.17e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,8.18e-20,31;UBERON:0005409,8.03e-18,47;UBERON:0004119,4.98e-17,118;UBERON:0000925,4.98e-17,118;UBERON:0006595,4.98e-17,118;UBERON:0001007,1.35e-16,116;UBERON:0001555,1.35e-16,116;UBERON:0007026,1.35e-16,116;UBERON:0004921,2.14e-15,114;UBERON:0000344,1.61e-11,15;UBERON:0001242,4.01e-10,13;UBERON:0001262,4.01e-10,13;UBERON:0004786,4.01e-10,13;UBERON:0005177,5.67e-10,79;UBERON:0000485,5.86e-08,11;UBERON:0004923,1.13e-07,24;UBERON:0003350,1.74e-07,9;UBERON:0004808,1.74e-07,9;UBERON:0001277,1.74e-07,9;UBERON:0002100,2.80e-07,90 | |||
|phase1_expression=4.32401887182944,24.0793031271159,26.8449551239826,19.660173734944,22.5403078475856,14.6054966563344,13.315920513945,0.129123323441576,0.84473233291,0,1.02730780935303,0.0797721589953364,2.05440875917447,0.0874204024189974,0,2.02475267389826,0.699561878128147,6.62470547252299,6.30726394586398,5.51706547337439,2.89147186513637,0,0,14.5593104742,14.2233754261645,20.0981187440257,15.5074318617267,15.7293999860699,17.29213117053,11.8454160987167,14.6342137032501,2.54012269383853,0,0,9.24325183204079,8.14549762256613,10.4126371693808,0,0,0.523523743973798,0.588231488031014,1.36609096991689,1.45653105909346,0,0,0,0,0,0,0,0.139986421625363,0,5.03347818173209,2.17608642603403,2.01656279485478,0,0,0,0.606949382578793,0.528990979272033,0.633831403506179,0,0,0,0,0,0,0,0,0,0,0.571301968807607,0,0.122490799214954,0,0.919218786610021,0,0.510749352340751,0.153606533256243,0.527545150920775,1.28082701043374,0.52091337055676,0.279182999001381,0.56276261003168,0.15279824777681,0.294628585473668,0,0,0.075726193333184,0.0755715601067855,3.47837386442013,0.860423876981386,8.15965600449301,3.77792234146472,2.59910566979068,1.79210754838934,2.52799956237153,0,0,0,5.91542363062058,0,0,0,7.57718643539249,10.1343946190039,8.59391556525132,3.53970027129086,1.29468941823586,0.148442139064825,0.346970653532272,0.304465478312141,1.15307748628029,0,0.117588707135705,0,9.88779870937496,0.144599356919912,0.884610551949874,0.323533699894818,0.220841518460394,0.484875253135222,9.31958806090611,3.80615036115011,6.28340120440365,10.9846533739694,0.479260498023681,0.599902730993408,0.635351135365324,0.449371918214468,0,0.251308704225729,0.347648640384553,0.255715457330331,0.20778804455956,0.162241263067758,2.54598409625791,1.99051152976149,6.31806896084187,4.8401626853889,0.390361328888111,0.459804208866946,1.0803727788321,0.90422890701429,0.816437989815934,0.2562274405697,0.655912071918102,2.32833033665114,0.431135985865684,0.756424320671277,0.703804496655795,0.876782929710299,0.556094498451196,1.74126083261083,1.64625709126355,0,0,0.772043721344145,1.13665399758237,0.414251545071004,0.234526059981096,0.540186184383045,0.946978942340841,0,0.308534225774757,0.465067889500816,0,0.700592054203017,0.822799249567402,0.985004784474571,0.162137619091711,0,0.439100230582101,0.134206418760372,0,0.102904612379284,9.91256348951394,10.3135720998782,1.70630600428187,4.41249676534833,7.86091514064769,8.87407508342707,9.11749979763968,12.1744400712038,12.8122846617018,11.0348299665087,10.0534083520108,12.5342577385925,11.1129529657898,12.5834717211591,14.6973873914792,11.1519113022446,3.60369011810855,2.97046132785295,1.1270773567308,3.25842124552503,4.46090720485539,5.61086559122549,5.1853960441891,3.83786384746966,5.33795674660674,3.70191491765402,7.11486305009157,1.16791574001266,0.786235980452812,2.69834534861824,2.23146133527353,3.37648023653384,3.56476192493988,3.74004978686054,5.5125977103512,7.13859674289012,4.31304619582064,4.09355042435354,7.80094182786401,4.04126204715379,5.38192240565737,4.82443521363367,7.02062122633098,1.32643988239339,1.79261474086228,3.39490171550376,2.11221223459652,3.01511263395268,1.90434912708811,5.85400943573396,2.04925687338048,4.20782910332672,2.55127629851979,3.76885623846197,2.93564469172023,3.61622646453779,0,0,4.91764273019036,8.27810238914197,0.160550589987792,0.117211686592203,0,0.757412781613119,0,0,0,0,0,0,0,0,0,0.321321316421807,2.41298144854057,1.6025904330053,3.25773918707152,5.27904393512113,6.63725691699814,6.79785781233948,12.09294227859,6.97838795096823,9.44966057218473,8.9156192903739,8.01127708821486,10.5424781548477,5.70395805415554,5.37262488490887,2.10837217149998,3.09406629744561,2.38307724027652,2.16073312837572,4.52755393239641,2.7863814554107,4.61084607469911,3.56737635204141,1.97458824722545,1.8267896946876,3.28540391289194,2.96564899209348,3.52845436887939,1.81374878235628,1.77610869365496,3.07595917133595,4.05865969610664,2.79039529566604,8.74442509889552,0.370850604021019,2.05045056957423,0.82554747185289,0.185194527369712,0.376736914009382,0.956859594047176,1.14389086603261,3.73952545986482,2.6590775941495,5.94259887359022,6.68269432610579,1.73984796469624,4.87966721104437,5.94029374519907,5.01811910434725,3.27543845619266,3.9110660451598,4.79390043206948,3.40282724579238,13.2207272757629,8.69875038321696,0,0.448549638131936,0.827292452285488,1.75006069509643,0.904118764344118,0.337912250981556,1.76035857968631,2.604087696879,1.8874681996628,0.724752362478018,0.864090018773596,0.316011120628178,1.41907650703115,0.616265742988964,0.389762468933385,0.179026695667481,0.39736270956253,0.240390899039938,0.590758108698309,0.807731599585181,0.457240839929999,0.705783295957884,0.584747284438515,0.673482891482306,0.584384510907845,2.26730383615211,2.88581739386284,3.85769583420746,4.19711540910196,6.95482538515886,2.43987218086537,6.22715522508701,6.85978813053011,7.52358156053045,0,0,0.572895513439397,0,0,0,0,0.45032120322422,0,1.03552062350364,0.103787347584177,0.798049746802062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| |||
|short_description=p1@Marveld2 | |||
}} | |||
Revision as of 23:43, 12 September 2013
| Short description: | p1@Marveld2 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Marveld2_5end |
| Coexpression cluster: | MCL_coexpression_mm9:12 |
| Association with transcript: | 0bp_to_ENSMUST00000022137, ENSMUST00000163163, NM_001038602, NM_178410, uc007rra.2, uc007rrb.2, uc011zdz.1_5end |
| EntrezGene: | Marveld2 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 3.43e-09 | 25 |
| intestinal epithelial cell | 1.74e-07 | 9 |
| epithelial cell of alimentary canal | 1.74e-07 | 9 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 8.18e-20 | 31 |
| gastrointestinal system | 8.03e-18 | 47 |
| endoderm-derived structure | 4.98e-17 | 118 |
| endoderm | 4.98e-17 | 118 |
| presumptive endoderm | 4.98e-17 | 118 |
| digestive system | 1.35e-16 | 116 |
| digestive tract | 1.35e-16 | 116 |
| primitive gut | 1.35e-16 | 116 |
| subdivision of digestive tract | 2.14e-15 | 114 |
| mucosa | 1.61e-11 | 15 |
| intestinal mucosa | 4.01e-10 | 13 |
| wall of intestine | 4.01e-10 | 13 |
| gastrointestinal system mucosa | 4.01e-10 | 13 |
| trunk region element | 5.67e-10 | 79 |
| simple columnar epithelium | 5.86e-08 | 11 |
| organ component layer | 1.13e-07 | 24 |
| epithelium of mucosa | 1.74e-07 | 9 |
| gastrointestinal system epithelium | 1.74e-07 | 9 |
| intestinal epithelium | 1.74e-07 | 9 |
| trunk | 2.80e-07 | 90 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
