Personal tools

NonredundantMotifs:36: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{Known_motif |entrez_gene_id=5914 |motif_cluster_2013_march_motif_members= /HOMER:NR1H2_BLRP(RAW)-LXRb-ChIP-Seq /HOCOMOCO:RARA_f1~THA_f1~NR1I2_f2~THA_f2~RARB_f1~NR1I3_f2~...")
 
m (Autoedit moved page NonredundantMotifs:Motif36 to NonredundantMotifs:36 without leaving a redirect: NSchange)
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;11.09350127307007;19.55671508738457;22.621106778155603;4.716253700384445!2;57.9875768389947;0.0;0.0;0.0!3;0.0;0.0;57.9875768389947;0.0!4;0.0;0.0;57.9875768389947;0.0!5;0.0;0.0;0.0;57.9875768389947!6;0.0;57.9875768389947;0.0;0.0!7;57.9875768389947;0.0;0.0;0.0
|entrez_gene_id=5914
|entrez_gene_id=5914
|motif_cluster_2013_march_motif_members= /HOMER:NR1H2_BLRP(RAW)-LXRb-ChIP-Seq /HOCOMOCO:RARA_f1~THA_f1~NR1I2_f2~THA_f2~RARB_f1~NR1I3_f2~RXRB_f1~THB_f1~THB_do
|motif_cluster_2013_march_motif_members= /HOCOMOCO:THB_do~THA_f2~NR1I2_f2~NR1I3_f2~THA_f1~THB_f1~RARA_f1~RARB_f1~RXRB_f1 /HOMER:NR1H2_BLRP(RAW)-LXRb-ChIP-Seq
|name=known36
|name=non-redundant36
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=RARA_f1
|representative_motif_id=RARA_f1
Line 11: Line 12:
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant36
  • db :HOCOMOCO
  • Id :RARA_f1
  • name  :
  • score :0.2788936316060929
  • External refs:
EntrezGene:5914
UniProt:5914

  • Internal refs:
EntrezGene:5914


Motif matrix
P0ACGT
111.0935012730700719.5567150873845722.6211067781556034.716253700384445
257.98757683899470.00.00.0
30.00.057.98757683899470.0
40.00.057.98757683899470.0
50.00.00.057.9875768389947
60.057.98757683899470.00.0
757.98757683899470.00.00.0

Sub Motif Members