Personal tools

Template:UO: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 28: Line 28:
<html>
<html>
<head>
<head>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/ZeroClipboard.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.js"></script>
<style type="text/css" title="currentStyle">
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/5/sstar/rb_js/html5button/datatables.css";
                @import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
        @import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
</style>
</style>
<script type="text/javascript">
<script type="text/javascript">
Line 40: Line 38:
$(document).ready(function() {
$(document).ready(function() {
if( $('.ont_enrich_ffcp').length ){
if( $('.ont_enrich_ffcp').length ){
var oTable= $('.ont_enrich_ffcp').dataTable({
var oTable= $('.ont_enrich_ffcp').DataTable({
"sScrollY": "300px",
scrollY: "300px",
"bPaginate": false,
scrollCollapse: true,
"bScrollCollapse": true,
paging: false,
"iDisplayLength": -1,
pageLength: -1,
"aaSorting": [[0,'asc']],
order: [[0,'asc']],
"aoColumnDefs": [{"fnRender": function ( o, val ) {
        buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
var title = o.aData[1].split("#")[0];
columnDefs: [{ width: "100px", type: "html-num", targets: [0] }],
return "<a href=\"/resource_browser/index.php/"+title+"\">"+title+"</a>";
columns: [null,
}, "aTargets": [1]}, { "sWidth": "100px", "sType": "numeric", "aTargets": [0] }]
{render: function ( data, type, row, meta ) {
var title = data.split("#")[0];
return "<a href=\"/5/sstar/index.php/"+title+"\">"+title+"</a>";
}
},
null
]
});
});
var oTableTools = new TableTools( oTable, {"sSwfPath": "/resource_browser/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy",  "mColumns": "visible"}, {"sExtends": "csv", "mColumns": "visible"},{"sExtends": "pdf", "mColumns": "visible"} ]});
$('#export_tool').before( oTableTools.dom.container );
}
}
else
else
Line 103: Line 104:
{{#ifexpr: {{#ask:[[ffcp_ontology_enrichment_celltype_id::{{{id}}}]]|format=count}} > 0|
{{#ifexpr: {{#ask:[[ffcp_ontology_enrichment_celltype_id::{{{id}}}]]|format=count}} > 0|
{{#ask:[[ffcp_ontology_enrichment_celltype_id::{{{id}}}]]
{{#ask:[[ffcp_ontology_enrichment_celltype_id::{{{id}}}]]
|?ffcp_ontology_enrichment_celltype_p-value|format=template|template=Triplecolumn_to_tbrow|link=none|intro=<html><span id="export_tool"></span><table class="ont_enrich_ffcp"><thead><tr><th>P-value</th><th>FFCP</th><th>Short description</th></tr></thead><tbody></html>|outro=<html></tbody></table></html>|sort=ffcp_ontology_enrichment_celltype_p-value|order=asc|limit=100|searchlabel=}}
|?ffcp_ontology_enrichment_celltype_p-value|format=template|template=Triplecolumn_to_tbrow|link=none|intro=<html><span id="export_tool"></span><table class="ont_enrich_ffcp stripe cell-border order-column compact"><thead><tr><th>P-value</th><th>FFCP</th><th>Short description</th></tr></thead><tbody></html>|outro=<html></tbody></table></html>|sort=ffcp_ontology_enrichment_celltype_p-value|order=asc|limit=100|searchlabel=}}
|No analysis results for this cluster}}
|No analysis results for this cluster}}



Revision as of 18:21, 15 February 2018

Name:{{{name}}}
Namespace:{{{namespace}}}
Definition:{{{def}}}
Xrefs:
links:
{{{xref}}}:[1]
Synonyms: {{{synonym}}}
Comments:{{{comment}}}
Alt_id: {{{alt_id}}}
Subset: {{{subset}}}
Created by:{{{created_by}}}
Creation date:{{{obo_creation_date}}}
Has quality:{{{has_quality}}}


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents
NA

Children


NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with {{{id}}} ({{{name}}}), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results for this cluster








"{{{obo_creation_date}}}" contains an extrinsic dash or other characters that are invalid for a date interpretation.