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UBERON:0000475

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Name:organism subdivision
Namespace:FANTOM
Definition:"Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism." [CARO:0000032, CARO:MAH, Wikipedia:Body_part]
Xrefs:
links:

AAO:0010053
AEO:0000032
BILA:0000032
CARO:0000032
EFO:0000808
EHDAA2:0003032
FBbt:00007009
FMA:7153
galen:BodyPart
HAO:0000032
MA:0002433
MAT:0000293
MESH:A.01
MIAA:0000293
ncithesaurus:Body_Part
OpenCyc:Mx4rvViAHJwpEbGdrcN5Y29ycA
TAO:0001308
TGMA:0001840
XAO:0003013

ZFA:0001308
Synonyms: "body part" RELATED []
"body region" RELATED [FMA:7153]
"cardinal body part" RELATED [FMA:7153]
Comments:Editor note: revise after CARO2. todo - check the inclusion of FMA 'cardinal body part here', and check child terms for consistency
Alt_id: UBERON:CARO_0000032-FBbt_00007009-FMA_67504-MIAA_0000293-XAO_0003013-ZFA_0001308
Subset: uberon_slim
upper_level

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0010000(multicellular anatomical structure)
part_of:UBERON:0000468(multi-cellular organism)



Children

is a:UBERON:0000026 (appendage),UBERON:0000153 (anterior region of body),UBERON:0000154 (posterior region of body),UBERON:0000310 (breast),UBERON:0000341 (throat),UBERON:0000974 (neck),UBERON:0001137 (dorsum),UBERON:0001444 (subdivision of head),UBERON:0001467 (shoulder),UBERON:0002355 (pelvis),UBERON:0005881 (limb outgrowth),UBERON:0007029 (surface),UBERON:0007811 (craniocervical region),UBERON:0009113 (thymic region),UBERON:0009569 (subdivision of trunk),UBERON:0010707 (appendage girdle complex),UBERON:0010758 (subdivision of organism along appendicular axis),UBERON:0011676 (subdivision of organism along main body axis),UBERON:0013701 (main body axis),UBERON:0013702 (body proper),UBERON:5002544 (digit plus metapodial segment)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000475 (organism subdivision), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results