Personal tools

UBERON:0002227: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002227
|alt_id=UBERON:FMA_75715-MA_0001193
|name=spiral organ of cochlea
|namespace=
|def="The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti]
|xref=AAO:0011018;;BTO:0001691;;EFO:0001364;;EMAPA:19061;;EMAPA:19151;;EV:0100364;;FMA:75715;;GAID:772;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png;;MA:0001193;;ncithesaurus:Organ_of_Corti;;ncithesaurus:Spiral_Organ_of_Corti;;NIF_GrossAnatomy:birnlex_2526;;XAO:0003145
|is_a=UBERON:0000064;;UBERON:0004120;;UBERON:0004121
|synonym="basilar papilla" RELATED [BTO:0001691];;"cochlear spiral organ" EXACT [];;"Corti's organ" RELATED [BTO:0001691];;"organ of corti" RELATED [];;"organum spirale" RELATED [BTO:0001691];;"spiral organ" EXACT [];;"spiral organ of corti" EXACT []
|comment=Todo - check XAO, taxon constraints
|comment=Todo - check XAO, taxon constraints
|alt_id=UBERON:FMA_75715-MA_0001193
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002227
|is_a=UBERON:0000020 ;;UBERON:0004121 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|name=spiral organ of cochlea
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001855
|part_of=UBERON:0001855
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A sensory structure in the lagenar portion of an amphibian's membranous labyrinth between the oval and round windows.[AAO]" xsd:string
|subset=uberon_slim
|synonym="basilar papilla" RELATED [BTO:0001691];;"cochlear spiral organ" EXACT [];;"Corti's organ" RELATED [BTO:0001691];;"organ of corti" RELATED [];;"organum spirale" RELATED [BTO:0001691];;"organum spirale" RELATED LATIN [Wikipedia:Organ_of_Corti];;"spiral organ" EXACT [];;"spiral organ of corti" EXACT []
|union_of=
|xref=AAO:0011018;;BTO:0001691;;EFO:0001364;;EMAPA:19061;;EMAPA:19151;;EV:0100364;;FMA:75715;;GAID:772;;http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png;;MA:0001193;;ncithesaurus:Organ_of_Corti;;ncithesaurus:Spiral_Organ_of_Corti;;NIF_GrossAnatomy:birnlex_2526;;XAO:0003145
}}
}}

Latest revision as of 17:28, 12 September 2014

Name:spiral organ of cochlea
Namespace:FANTOM
Definition:"The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti]
Xrefs:
links:

AAO:0011018
BTO:0001691
EFO:0001364
EMAPA:19061
EMAPA:19151
EV:0100364
FMA:75715
GAID:772
[1]
[ 200px-Cochlea-crosssection.png 200px-Cochlea-crosssection.png]
MA:0001193
ncithesaurus:Organ_of_Corti
ncithesaurus:Spiral_Organ_of_Corti
NIF_GrossAnatomy:birnlex_2526

XAO:0003145
Synonyms: "basilar papilla" RELATED [BTO:0001691]
"cochlear spiral organ" EXACT []
"Corti's organ" RELATED [BTO:0001691]
"organ of corti" RELATED []
"organum spirale" RELATED [BTO:0001691]
"organum spirale" RELATED LATIN [Wikipedia:Organ_of_Corti]
"spiral organ" EXACT []
"spiral organ of corti" EXACT []
Comments:Todo - check XAO, taxon constraints
Alt_id: UBERON:FMA_75715-MA_0001193
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000020(sense organ),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0001855(cochlear duct of membranous labyrinth)



Children

part of:CL:0000202 (auditory hair cell),CL:0000589 (cochlear inner hair cell),CL:0002490 (organ of Corti supporting cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002227 (spiral organ of cochlea), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_94b85a8110f1309d0c218c5f692a21e0p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_94b85a8110f1309d0c218c5f692a21e0p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_94b85a8110f1309d0c218c5f692a21e0p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_94b85a8110f1309d0c218c5f692a21e0p2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_94b85a8110f1309d0c218c5f692a21e0p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_94b85a8110f1309d0c218c5f692a21e0p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_94b85a8110f1309d0c218c5f692a21e0p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_94b85a8110f1309d0c218c5f692a21e0p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_94b85a8110f1309d0c218c5f692a21e0p1@Tomt
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_94b85a8110f1309d0c218c5f692a21e0p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_94b85a8110f1309d0c218c5f692a21e0p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_94b85a8110f1309d0c218c5f692a21e0p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_94b85a8110f1309d0c218c5f692a21e0p3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_94b85a8110f1309d0c218c5f692a21e0p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_94b85a8110f1309d0c218c5f692a21e0p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_94b85a8110f1309d0c218c5f692a21e0p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_94b85a8110f1309d0c218c5f692a21e0p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_94b85a8110f1309d0c218c5f692a21e0p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_94b85a8110f1309d0c218c5f692a21e0p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_94b85a8110f1309d0c218c5f692a21e0p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_94b85a8110f1309d0c218c5f692a21e0p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_94b85a8110f1309d0c218c5f692a21e0p1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_94b85a8110f1309d0c218c5f692a21e0p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_94b85a8110f1309d0c218c5f692a21e0p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_94b85a8110f1309d0c218c5f692a21e0p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_94b85a8110f1309d0c218c5f692a21e0p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_94b85a8110f1309d0c218c5f692a21e0p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_94b85a8110f1309d0c218c5f692a21e0p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_94b85a8110f1309d0c218c5f692a21e0p2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_94b85a8110f1309d0c218c5f692a21e0p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_94b85a8110f1309d0c218c5f692a21e0p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_94b85a8110f1309d0c218c5f692a21e0p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_94b85a8110f1309d0c218c5f692a21e0p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_94b85a8110f1309d0c218c5f692a21e0p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_94b85a8110f1309d0c218c5f692a21e0p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_94b85a8110f1309d0c218c5f692a21e0p2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_94b85a8110f1309d0c218c5f692a21e0p5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_94b85a8110f1309d0c218c5f692a21e0p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_94b85a8110f1309d0c218c5f692a21e0p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_94b85a8110f1309d0c218c5f692a21e0p11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_94b85a8110f1309d0c218c5f692a21e0p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_94b85a8110f1309d0c218c5f692a21e0p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_94b85a8110f1309d0c218c5f692a21e0p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_94b85a8110f1309d0c218c5f692a21e0p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_94b85a8110f1309d0c218c5f692a21e0p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_94b85a8110f1309d0c218c5f692a21e0p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_94b85a8110f1309d0c218c5f692a21e0p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_94b85a8110f1309d0c218c5f692a21e0p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_94b85a8110f1309d0c218c5f692a21e0p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_94b85a8110f1309d0c218c5f692a21e0p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_94b85a8110f1309d0c218c5f692a21e0p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_94b85a8110f1309d0c218c5f692a21e0p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_94b85a8110f1309d0c218c5f692a21e0p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_94b85a8110f1309d0c218c5f692a21e0p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_94b85a8110f1309d0c218c5f692a21e0p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_94b85a8110f1309d0c218c5f692a21e0p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_94b85a8110f1309d0c218c5f692a21e0p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_94b85a8110f1309d0c218c5f692a21e0p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_94b85a8110f1309d0c218c5f692a21e0p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_94b85a8110f1309d0c218c5f692a21e0p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_94b85a8110f1309d0c218c5f692a21e0p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_94b85a8110f1309d0c218c5f692a21e0p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_94b85a8110f1309d0c218c5f692a21e0p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_94b85a8110f1309d0c218c5f692a21e0p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_94b85a8110f1309d0c218c5f692a21e0p2@Strc
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_94b85a8110f1309d0c218c5f692a21e0p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_94b85a8110f1309d0c218c5f692a21e0p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_94b85a8110f1309d0c218c5f692a21e0p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_94b85a8110f1309d0c218c5f692a21e0p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_94b85a8110f1309d0c218c5f692a21e0p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_94b85a8110f1309d0c218c5f692a21e0p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_94b85a8110f1309d0c218c5f692a21e0p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_94b85a8110f1309d0c218c5f692a21e0p9@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_94b85a8110f1309d0c218c5f692a21e0p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_94b85a8110f1309d0c218c5f692a21e0p1@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_94b85a8110f1309d0c218c5f692a21e0p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_94b85a8110f1309d0c218c5f692a21e0p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_94b85a8110f1309d0c218c5f692a21e0p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_94b85a8110f1309d0c218c5f692a21e0p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_94b85a8110f1309d0c218c5f692a21e0p3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_94b85a8110f1309d0c218c5f692a21e0p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_94b85a8110f1309d0c218c5f692a21e0p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_94b85a8110f1309d0c218c5f692a21e0p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_94b85a8110f1309d0c218c5f692a21e0p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_94b85a8110f1309d0c218c5f692a21e0p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_94b85a8110f1309d0c218c5f692a21e0p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_94b85a8110f1309d0c218c5f692a21e0p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_94b85a8110f1309d0c218c5f692a21e0p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_94b85a8110f1309d0c218c5f692a21e0p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_94b85a8110f1309d0c218c5f692a21e0p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_94b85a8110f1309d0c218c5f692a21e0p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_94b85a8110f1309d0c218c5f692a21e0p6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_94b85a8110f1309d0c218c5f692a21e0p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_94b85a8110f1309d0c218c5f692a21e0p2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_94b85a8110f1309d0c218c5f692a21e0p2@Otof
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_94b85a8110f1309d0c218c5f692a21e0p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_94b85a8110f1309d0c218c5f692a21e0p@chr13:37195838..37195870, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "A sensory structure in the lagenar portion of an amphibian's membranous labyrinth between the oval and round windows.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002227&oldid=3277405"