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{{UBERON
{{UBERON
|id=UBERON:0004875
|alt_id=
|name=nephrogenic cord
|namespace=
|def="a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord]
|xref=FMA:72168;;ncithesaurus:Nephrogenic_Cord;;SCTID:361405003
|is_a=UBERON:0005423
|synonym=
|comment=part_of or develops_from urogenital ridge?
|comment=part_of or develops_from urogenital ridge?
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0004876
|develops_from=UBERON:0004876
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004875
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|name=nephrogenic cord
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922
|part_of=UBERON:0000922
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="chorda nephrogenica" RELATED LATIN [Wikipedia:Nephrogenic_cord]
|union_of=
|xref=FMA:72168;;ncithesaurus:Nephrogenic_Cord;;SCTID:361405003
}}
}}

Latest revision as of 17:49, 12 September 2014

Name:nephrogenic cord
Namespace:FANTOM
Definition:"a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord]
Xrefs:
links:

FMA:72168
ncithesaurus:Nephrogenic_Cord

SCTID:361405003
Synonyms: "chorda nephrogenica" RELATED LATIN [Wikipedia:Nephrogenic_cord]
Comments:part_of or develops_from urogenital ridge?

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0004876(urogenital ridge)
part_of:UBERON:0000922(embryo)



Children

part of:UBERON:0005754 (rostral part of nephrogenic cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004875 (nephrogenic cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.83e-65FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_3e74b05bcd4ae70139df9224d331bf42p@chr14:63585028..63585037, -
2.83e-65FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_3e74b05bcd4ae70139df9224d331bf42p4@Defb42
2.83e-65FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_3e74b05bcd4ae70139df9224d331bf42p4@Spink12
2.83e-65FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_3e74b05bcd4ae70139df9224d331bf42p4@Defb42
2.83e-65FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_3e74b05bcd4ae70139df9224d331bf42p@chr10:127470655..127470664, +
2.83e-65FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_3e74b05bcd4ae70139df9224d331bf42p@chr14:63585028..63585037, -
2.83e-65FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_3e74b05bcd4ae70139df9224d331bf42p4@Spink12
2.83e-65FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_3e74b05bcd4ae70139df9224d331bf42p@chr10:127470655..127470664, +
3.99e-50FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_c356b2c847a515521a6fe753444b3a76p@chr2:152388713..152388729, +
3.99e-50FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_c356b2c847a515521a6fe753444b3a76p@chr2:152388713..152388729, +
5.6e-50FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_a52ba957e8ad4186f4d8110f79d26ad7p@chr2:120409486..120409492, +
5.6e-50FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_a52ba957e8ad4186f4d8110f79d26ad7p@chr2:120409486..120409492, +
1.6e-49FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_386211f7cdcce24144f83dd84ef487d5p2@D730048I06Rik, p2@Gm17727
1.6e-49FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_386211f7cdcce24144f83dd84ef487d5p4@Cyb561
1.6e-49FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_386211f7cdcce24144f83dd84ef487d5p2@D730048I06Rik, p2@Gm17727
1.6e-49FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_386211f7cdcce24144f83dd84ef487d5p@chr14:63585048..63585062, -
1.6e-49FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_386211f7cdcce24144f83dd84ef487d5p4@Cyb561
1.6e-49FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_386211f7cdcce24144f83dd84ef487d5p@chr11:76361451..76361499, +
1.6e-49FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_386211f7cdcce24144f83dd84ef487d5p@chr14:63585020..63585025, -
1.6e-49FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_386211f7cdcce24144f83dd84ef487d5p@chr11:76361451..76361499, +
1.6e-49FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_386211f7cdcce24144f83dd84ef487d5p@chr14:63585020..63585025, -
1.6e-49FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_386211f7cdcce24144f83dd84ef487d5p@chr14:63585048..63585062, -
2.33e-49FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr9:26611246..26611253, -
2.33e-49FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr9:26732045..26732085, +
2.33e-49FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr9:26611246..26611253, -
2.33e-49FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr14:63627556..63627564, -
2.33e-49FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr9:26732045..26732085, +
2.33e-49FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_d9799cdb5d1792b54fa1fa8cc7d7483ap@chr14:63627556..63627564, -
2.33e-49FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_d9799cdb5d1792b54fa1fa8cc7d7483ap2@Eddm3b
2.33e-49FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_d9799cdb5d1792b54fa1fa8cc7d7483ap2@Eddm3b
3.4e-49FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_7e60dff3c96e89262e358066b0d5d3cap@chr2:69981027..69981032, +
3.4e-49FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_7e60dff3c96e89262e358066b0d5d3cap@chr2:69981027..69981032, +
9.75e-45FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_121e7bbcf9d5f9174346c0dd1cd0f66ep10@PAX2
9.75e-45FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_121e7bbcf9d5f9174346c0dd1cd0f66ep@chr1:172416185..172416189, -
9.75e-45FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_121e7bbcf9d5f9174346c0dd1cd0f66ep@chr1:172416185..172416189, -
9.75e-45FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_121e7bbcf9d5f9174346c0dd1cd0f66ep10@PAX2
9.75e-45FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_121e7bbcf9d5f9174346c0dd1cd0f66ep@chr14:68644730..68644737, +
9.75e-45FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_121e7bbcf9d5f9174346c0dd1cd0f66ep@chr14:68644730..68644737, +
4.54e-44FFCP PHASE2:Mm9::chr16:25752183..25752203,+#_2c808356ccd804cd36d69a04f78b05bep@chr16:25752183..25752203, +
4.54e-44FFCP PHASE2:Mm9::chr14:52542711..52542716,-#_2c808356ccd804cd36d69a04f78b05bep2@Rnase13
4.54e-44FFCP PHASE2:Mm9::chr1:87922962..87922982,+#_2c808356ccd804cd36d69a04f78b05bep@chr1:87922962..87922982, +
4.54e-44FFCP PHASE1:Mm9::chr8:126604677..126604701,-#_2c808356ccd804cd36d69a04f78b05bep@chr8:126604677..126604701, -
4.54e-44FFCP PHASE2:Mm9::chr14:69116075..69116107,-#_2c808356ccd804cd36d69a04f78b05bep@chr14:69116075..69116107, -
4.54e-44FFCP PHASE2:Mm9::chr2:152290340..152290344,-#_2c808356ccd804cd36d69a04f78b05bep2@Defb23
4.54e-44FFCP PHASE2:Mm9::chr14:103837894..103837900,+#_2c808356ccd804cd36d69a04f78b05bep@chr14:103837894..103837900, +
4.54e-44FFCP PHASE1:Mm9::chr14:51734060..51734066,+#_2c808356ccd804cd36d69a04f78b05bep5@Eddm3b
4.54e-44FFCP PHASE1:Mm9::chr13:21379125..21379144,-#_2c808356ccd804cd36d69a04f78b05bep@chr13:21379125..21379144, -
4.54e-44FFCP PHASE2:Mm9::chr18:44264128..44264135,+#_2c808356ccd804cd36d69a04f78b05bep5@Spink12
4.54e-44FFCP PHASE2:Mm9::chr11:101958887..101958896,-#_2c808356ccd804cd36d69a04f78b05bep@chr11:101958887..101958896, -
4.54e-44FFCP PHASE1:Mm9::chr4:33600466..33600491,-#_2c808356ccd804cd36d69a04f78b05bep@chr4:33600466..33600491, -
4.54e-44FFCP PHASE2:Mm9::chr5:31377177..31377184,+#_2c808356ccd804cd36d69a04f78b05bep@chr5:31377177..31377184, +
4.54e-44FFCP PHASE1:Mm9::chr5:75559819..75559830,+#_2c808356ccd804cd36d69a04f78b05bep@chr5:75559819..75559830, +
4.54e-44FFCP PHASE2:Mm9::chr4:106730107..106730125,-#_2c808356ccd804cd36d69a04f78b05bep@chr4:106730107..106730125, -
4.54e-44FFCP PHASE1:Mm9::chr2:164464249..164464258,-#_2c808356ccd804cd36d69a04f78b05bep@chr2:164464249..164464258, -
4.54e-44FFCP PHASE1:Mm9::chr1:90155966..90155989,+#_2c808356ccd804cd36d69a04f78b05bep@chr1:90155966..90155989, +
4.54e-44FFCP PHASE1:Mm9::chr1:155698166..155698174,-#_2c808356ccd804cd36d69a04f78b05bep@chr1:155698166..155698174, -
4.54e-44FFCP PHASE2:Mm9::chr16:43230846..43230884,+#_2c808356ccd804cd36d69a04f78b05bep@chr16:43230846..43230884, +
4.54e-44FFCP PHASE2:Mm9::chr14:51734060..51734066,+#_2c808356ccd804cd36d69a04f78b05bep5@Eddm3b
4.54e-44FFCP PHASE1:Mm9::chr2:158083973..158083982,+#_2c808356ccd804cd36d69a04f78b05bep3@Bpi
4.54e-44FFCP PHASE1:Mm9::chr17:35249011..35249020,-#_2c808356ccd804cd36d69a04f78b05bep@chr17:35249011..35249020, -
4.54e-44FFCP PHASE1:Mm9::chr12:16664775..16664784,+#_2c808356ccd804cd36d69a04f78b05bep@chr12:16664775..16664784, +
4.54e-44FFCP PHASE2:Mm9::chrX:12571679..12571688,-#_2c808356ccd804cd36d69a04f78b05bep@chrX:12571679..12571688, -
4.54e-44FFCP PHASE1:Mm9::chr2:167480413..167480463,-#_2c808356ccd804cd36d69a04f78b05bep@chr2:167480413..167480463, -
4.54e-44FFCP PHASE1:Mm9::chr1:168436322..168436326,-#_2c808356ccd804cd36d69a04f78b05bep@chr1:168436322..168436326, -
4.54e-44FFCP PHASE2:Mm9::chr11:59845349..59845371,-#_2c808356ccd804cd36d69a04f78b05bep@chr11:59845349..59845371, -
4.54e-44FFCP PHASE2:Mm9::chr17:73221034..73221051,+#_2c808356ccd804cd36d69a04f78b05bep@chr17:73221034..73221051, +
4.54e-44FFCP PHASE1:Mm9::chr4:137325863..137325870,-#_2c808356ccd804cd36d69a04f78b05bep15@Alpl
4.54e-44FFCP PHASE1:Mm9::chr14:51676936..51676963,-#_2c808356ccd804cd36d69a04f78b05bep6@Rnase12
4.54e-44FFCP PHASE1:Mm9::chr13:21378871..21378901,-#_2c808356ccd804cd36d69a04f78b05bep@chr13:21378871..21378901, -
4.54e-44FFCP PHASE1:Mm9::chr9:35657557..35657582,-#_2c808356ccd804cd36d69a04f78b05bep2@Gm3428
4.54e-44FFCP PHASE1:Mm9::chr3:107731917..107731926,-#_2c808356ccd804cd36d69a04f78b05bep@chr3:107731917..107731926, -
4.54e-44FFCP PHASE1:Mm9::chrX:156829476..156829504,+#_2c808356ccd804cd36d69a04f78b05bep@chrX:156829476..156829504, +
4.54e-44FFCP PHASE2:Mm9::chr9:35651788..35651804,-#_2c808356ccd804cd36d69a04f78b05bep1@9230110F15Rik
4.54e-44FFCP PHASE2:Mm9::chr9:26730625..26730636,-#_2c808356ccd804cd36d69a04f78b05bep3@Gm1110
4.54e-44FFCP PHASE1:Mm9::chr5:35930706..35930717,+#_2c808356ccd804cd36d69a04f78b05bep@chr5:35930706..35930717, +
4.54e-44FFCP PHASE1:Mm9::chr1:89597725..89597743,+#_2c808356ccd804cd36d69a04f78b05bep@chr1:89597725..89597743, +
4.54e-44FFCP PHASE2:Mm9::chr14:51677141..51677148,-#_2c808356ccd804cd36d69a04f78b05bep7@Rnase12
4.54e-44FFCP PHASE1:Mm9::chr11:59845376..59845393,-#_2c808356ccd804cd36d69a04f78b05bep@chr11:59845376..59845393, -
4.54e-44FFCP PHASE2:Mm9::chr8:22061771..22061777,-#_2c808356ccd804cd36d69a04f78b05bep3@Gm6040, p3@LOC100503992
4.54e-44FFCP PHASE2:Mm9::chr1:90368977..90368987,+#_2c808356ccd804cd36d69a04f78b05bep@chr1:90368977..90368987, +
4.54e-44FFCP PHASE2:Mm9::chr14:63611214..63611229,+#_2c808356ccd804cd36d69a04f78b05bep@chr14:63611214..63611229, +
4.54e-44FFCP PHASE2:Mm9::chr2:164464249..164464258,-#_2c808356ccd804cd36d69a04f78b05bep@chr2:164464249..164464258, -
4.54e-44FFCP PHASE2:Mm9::chr1:43367743..43367754,-#_2c808356ccd804cd36d69a04f78b05bep@chr1:43367743..43367754, -
4.54e-44FFCP PHASE1:Mm9::chr6:118298429..118298448,+#_2c808356ccd804cd36d69a04f78b05bep@chr6:118298429..118298448, +
4.54e-44FFCP PHASE1:Mm9::chr16:23308115..23308126,+#_2c808356ccd804cd36d69a04f78b05bep@chr16:23308115..23308126, +
4.54e-44FFCP PHASE1:Mm9::chr14:67453354..67453365,-#_2c808356ccd804cd36d69a04f78b05bep@chr14:67453354..67453365, -
4.54e-44FFCP PHASE1:Mm9::chr11:101959282..101959299,-#_2c808356ccd804cd36d69a04f78b05bep@chr11:101959282..101959299, -
4.54e-44FFCP PHASE2:Mm9::chr8:25706083..25706089,-#_2c808356ccd804cd36d69a04f78b05bep4@Ido1
4.54e-44FFCP PHASE2:Mm9::chr7:6204391..6204398,+#_2c808356ccd804cd36d69a04f78b05bep2@Gm6792
4.54e-44FFCP PHASE1:Mm9::chr7:151927980..151927988,+#_2c808356ccd804cd36d69a04f78b05bep@chr7:151927980..151927988, +
4.54e-44FFCP PHASE1:Mm9::chr5:120078716..120078763,-#_2c808356ccd804cd36d69a04f78b05bep@chr5:120078716..120078763, -
4.54e-44FFCP PHASE2:Mm9::chr2:158083973..158083982,+#_2c808356ccd804cd36d69a04f78b05bep3@Bpi
4.54e-44FFCP PHASE1:Mm9::chr3:103650730..103650741,+#_2c808356ccd804cd36d69a04f78b05bep@chr3:103650730..103650741, +
4.54e-44FFCP PHASE1:Mm9::chr1:43367743..43367754,-#_2c808356ccd804cd36d69a04f78b05bep@chr1:43367743..43367754, -
4.54e-44FFCP PHASE2:Mm9::chr15:75304916..75304925,+#_2c808356ccd804cd36d69a04f78b05bep@chr15:75304916..75304925, +
4.54e-44FFCP PHASE2:Mm9::chr9:56469136..56469145,-#_2c808356ccd804cd36d69a04f78b05bep@chr9:56469136..56469145, -
4.54e-44FFCP PHASE1:Mm9::chr5:31379972..31379981,+#_2c808356ccd804cd36d69a04f78b05bep@chr5:31379972..31379981, +
4.54e-44FFCP PHASE1:Mm9::chr2:25677632..25677636,-#_2c808356ccd804cd36d69a04f78b05bep@chr2:25677632..25677636, -
4.54e-44FFCP PHASE2:Mm9::chr8:19142604..19142612,+#_2c808356ccd804cd36d69a04f78b05bep@chr8:19142604..19142612, +
4.54e-44FFCP PHASE2:Mm9::chr5:75559819..75559830,+#_2c808356ccd804cd36d69a04f78b05bep@chr5:75559819..75559830, +

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