UBERON:0005408: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=circumventricular organ | |name=circumventricular organ | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000955 | |part_of=UBERON:0000955 | ||
Latest revision as of 17:53, 12 September 2014
| Name: | circumventricular organ | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Brain region located around or in relation to the ventricular system that is highly vascularized and distinguished by the lack of a blood brain barrier." [NIF_GrossAnatomy:nlx_anat_20090312, Wikipedia:Circumventricular_organs] | ||
| Xrefs: |
| ||
| Synonyms: |
"circumventricular organ" EXACT [NIF_GrossAnatomy:nlx_anat_20090312] "CVO" EXACT [NIF_GrossAnatomy:nlx_anat_20090312] | ||
| Comments: | AO notes: MA subdivides into sensory and secretory |
Gray734.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002616(regional part of brain) |
|---|---|
| part_of: | UBERON:0000955(brain) |
Children
| is a: | UBERON:0010134 (secretory circumventricular organ) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10377-105G8 (pineal gland, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005408 (circumventricular organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18067951..18067954,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr11:18067951..18067954, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr16:51808960..51808964,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr16:51808960..51808964, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135474173..135474185,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr8:135474173..135474185, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135521466..135521470,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr8:135521466..135521470, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr4:20985967..20985972,-#_b3259e9f673ae942fe92d28dd8110bcc | p28@KCNIP4 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:57914395..57914398,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr1:57914395..57914398, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr15:55470964..55470974,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr15:55470964..55470974, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:17185958..17185998,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr2:17185958..17185998, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135504337..135504342,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr8:135504337..135504342, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr16:18066392..18066397,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr16:18066392..18066397, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:17085717..17085733,-#_b3259e9f673ae942fe92d28dd8110bcc | p2@PLCL2-AS1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:13820103..13820109,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr1:13820103..13820109, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr14:55282406..55282415,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr14:55282406..55282415, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:9782610..9782613,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr7:9782610..9782613, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:72297717..72297725,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr11:72297717..72297725, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chrX:33146637..33146644,-#_b3259e9f673ae942fe92d28dd8110bcc | p35@DMD |
| 3.29e-195 | FFCP PHASE2:Hg19::chr16:51174216..51174239,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr16:51174216..51174239, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:17141934..17141935,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr2:17141934..17141935, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:99860883..99860921,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr1:99860883..99860921, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135473472..135473477,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr8:135473472..135473477, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:9202487..9202498,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr7:9202487..9202498, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:87751931..87751947,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr8:87751931..87751947, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:9186866..9186885,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr7:9186866..9186885, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:100942645..100942655,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr3:100942645..100942655, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr20:44991864..44991887,-#_b3259e9f673ae942fe92d28dd8110bcc | p10@SLC35C2 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:54952412..54952416,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr3:54952412..54952416, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18041194..18041197,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr11:18041194..18041197, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:17040158..17040170,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr2:17040158..17040170, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr14:49512240..49512248,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr14:49512240..49512248, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr17:6328202..6328224,-#_b3259e9f673ae942fe92d28dd8110bcc | p1@BC014398 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:9178350..9178369,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr7:9178350..9178369, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr15:47662877..47662880,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr15:47662877..47662880, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:99860753..99860764,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr1:99860753..99860764, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135504314..135504320,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr8:135504314..135504320, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:36878535..36878540,+#_b3259e9f673ae942fe92d28dd8110bcc | p4@ENST00000439998 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:18040537..18040547,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr11:18040537..18040547, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr15:55470984..55471009,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr15:55470984..55471009, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr13:68306577..68306607,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr13:68306577..68306607, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:139938385..139938390,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr3:139938385..139938390, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr4:20985967..20985972,-#_b3259e9f673ae942fe92d28dd8110bcc | p28@KCNIP4 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:108604491..108604499,+#_b3259e9f673ae942fe92d28dd8110bcc | p8@SLC5A7 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:49621641..49621650,+#_b3259e9f673ae942fe92d28dd8110bcc | p22@TUBA1C |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18063669..18063678,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr11:18063669..18063678, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr13:52650530..52650533,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr13:52650530..52650533, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chrX:33146501..33146521,-#_b3259e9f673ae942fe92d28dd8110bcc | p32@DMD |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135473983..135473986,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr8:135473983..135473986, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr9:37692930..37692936,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr9:37692930..37692936, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135515989..135515991,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr8:135515989..135515991, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:4224059..4224062,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr2:4224059..4224062, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:87751918..87751928,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr8:87751918..87751928, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:116127086..116127103,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr8:116127086..116127103, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:120842768..120842790,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr7:120842768..120842790, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr13:52650530..52650533,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr13:52650530..52650533, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:129084265..129084288,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr7:129084265..129084288, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:99033409..99033415,+#_b3259e9f673ae942fe92d28dd8110bcc | p16@MATN2 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:17141934..17141935,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr2:17141934..17141935, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:57975398..57975401,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr1:57975398..57975401, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:9202487..9202498,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr7:9202487..9202498, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:6954834..6954841,+#_b3259e9f673ae942fe92d28dd8110bcc | p9@GNB3 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr16:51808960..51808964,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr16:51808960..51808964, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:6956383..6956390,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr12:6956383..6956390, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:107545606..107545631,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr3:107545606..107545631, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:54952412..54952416,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr3:54952412..54952416, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:18041244..18041266,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr11:18041244..18041266, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:139938385..139938390,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr3:139938385..139938390, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:240177602..240177607,+#_b3259e9f673ae942fe92d28dd8110bcc | p17@FMN2 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr9:88661694..88661709,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr9:88661694..88661709, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:75864329..75864335,+#_b3259e9f673ae942fe92d28dd8110bcc | p11@SRRM3 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:72297717..72297725,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr11:72297717..72297725, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:17040158..17040170,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr2:17040158..17040170, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:154540028..154540037,+#_b3259e9f673ae942fe92d28dd8110bcc | p4@CHRNB2 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr14:55282406..55282415,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr14:55282406..55282415, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:9178350..9178369,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr7:9178350..9178369, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr9:37668094..37668097,+#_b3259e9f673ae942fe92d28dd8110bcc | p6@FRMPD1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135515957..135515964,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr8:135515957..135515964, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:36878535..36878540,+#_b3259e9f673ae942fe92d28dd8110bcc | p4@ENST00000439998 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:45782019..45782028,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr1:45782019..45782028, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:9782665..9782674,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr7:9782665..9782674, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr16:18066392..18066397,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr16:18066392..18066397, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr5:119867229..119867240,+#_b3259e9f673ae942fe92d28dd8110bcc | p9@PRR16 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18067959..18067962,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr11:18067959..18067962, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:108604491..108604499,+#_b3259e9f673ae942fe92d28dd8110bcc | p8@SLC5A7 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:204667243..204667248,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr1:204667243..204667248, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr5:134871183..134871197,-#_b3259e9f673ae942fe92d28dd8110bcc | p3@NEUROG1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135499228..135499260,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr8:135499228..135499260, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr16:51174216..51174239,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr16:51174216..51174239, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135522475..135522486,-#_b3259e9f673ae942fe92d28dd8110bcc | p16@ZFAT |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:4224059..4224062,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr2:4224059..4224062, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:120842768..120842790,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr7:120842768..120842790, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:192894646..192894653,-#_b3259e9f673ae942fe92d28dd8110bcc | p2@ENST00000414895 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr13:56628524..56628547,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr13:56628524..56628547, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:107545606..107545631,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr3:107545606..107545631, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135473063..135473075,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr8:135473063..135473075, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:49621641..49621650,+#_b3259e9f673ae942fe92d28dd8110bcc | p22@TUBA1C |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:129084265..129084288,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr7:129084265..129084288, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:18067904..18067908,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr11:18067904..18067908, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:57914399..57914402,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr1:57914399..57914402, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr15:55470984..55471009,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr15:55470984..55471009, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr13:68306577..68306607,+#_b3259e9f673ae942fe92d28dd8110bcc | p@chr13:68306577..68306607, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135473876..135473885,-#_b3259e9f673ae942fe92d28dd8110bcc | p@chr8:135473876..135473885, - |
