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{{UBERON
{{UBERON
|id=UBERON:0009123
|alt_id=
|name=otic cup
|namespace=
|def=
|xref=
|is_a=UBERON:0005423
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0003069
|develops_from=UBERON:0003069
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009123
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|name=otic cup
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 18:04, 12 September 2014

Name:otic cup
Namespace:FANTOM

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0003069(otic placode)



Children

develops from:UBERON:0003051 (ear vesicle)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009123 (otic cup), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_b1910012f17566919440def95cc5be02p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_b1910012f17566919440def95cc5be02p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_b1910012f17566919440def95cc5be02p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_b1910012f17566919440def95cc5be02p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_b1910012f17566919440def95cc5be02p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_b1910012f17566919440def95cc5be02p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_b1910012f17566919440def95cc5be02p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_b1910012f17566919440def95cc5be02p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_b1910012f17566919440def95cc5be02p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_b1910012f17566919440def95cc5be02p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_b1910012f17566919440def95cc5be02p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_b1910012f17566919440def95cc5be02p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_b1910012f17566919440def95cc5be02p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_b1910012f17566919440def95cc5be02p2@Gpr152
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_b1910012f17566919440def95cc5be02p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_b1910012f17566919440def95cc5be02p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_b1910012f17566919440def95cc5be02p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_b1910012f17566919440def95cc5be02p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_b1910012f17566919440def95cc5be02p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_b1910012f17566919440def95cc5be02p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_b1910012f17566919440def95cc5be02p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_b1910012f17566919440def95cc5be02p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_b1910012f17566919440def95cc5be02p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_b1910012f17566919440def95cc5be02p7@Tecta
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_b1910012f17566919440def95cc5be02p6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_b1910012f17566919440def95cc5be02p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_b1910012f17566919440def95cc5be02p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_b1910012f17566919440def95cc5be02p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_b1910012f17566919440def95cc5be02p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_b1910012f17566919440def95cc5be02p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_b1910012f17566919440def95cc5be02p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_b1910012f17566919440def95cc5be02p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_b1910012f17566919440def95cc5be02p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_b1910012f17566919440def95cc5be02p6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_b1910012f17566919440def95cc5be02p2@Strc
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_b1910012f17566919440def95cc5be02p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_b1910012f17566919440def95cc5be02p2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_b1910012f17566919440def95cc5be02p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_b1910012f17566919440def95cc5be02p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_b1910012f17566919440def95cc5be02p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_b1910012f17566919440def95cc5be02p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_b1910012f17566919440def95cc5be02p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_b1910012f17566919440def95cc5be02p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_b1910012f17566919440def95cc5be02p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_b1910012f17566919440def95cc5be02p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_b1910012f17566919440def95cc5be02p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_b1910012f17566919440def95cc5be02p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_b1910012f17566919440def95cc5be02p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_b1910012f17566919440def95cc5be02p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_b1910012f17566919440def95cc5be02p2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_b1910012f17566919440def95cc5be02p2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_b1910012f17566919440def95cc5be02p2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_b1910012f17566919440def95cc5be02p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_b1910012f17566919440def95cc5be02p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_b1910012f17566919440def95cc5be02p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_b1910012f17566919440def95cc5be02p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_b1910012f17566919440def95cc5be02p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_b1910012f17566919440def95cc5be02p4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_b1910012f17566919440def95cc5be02p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_b1910012f17566919440def95cc5be02p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_b1910012f17566919440def95cc5be02p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_b1910012f17566919440def95cc5be02p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_b1910012f17566919440def95cc5be02p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_b1910012f17566919440def95cc5be02p12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_b1910012f17566919440def95cc5be02p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_b1910012f17566919440def95cc5be02p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_b1910012f17566919440def95cc5be02p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_b1910012f17566919440def95cc5be02p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_b1910012f17566919440def95cc5be02p7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_b1910012f17566919440def95cc5be02p2@Otof
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_b1910012f17566919440def95cc5be02p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_b1910012f17566919440def95cc5be02p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_b1910012f17566919440def95cc5be02p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_b1910012f17566919440def95cc5be02p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_b1910012f17566919440def95cc5be02p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_b1910012f17566919440def95cc5be02p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_b1910012f17566919440def95cc5be02p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_b1910012f17566919440def95cc5be02p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_b1910012f17566919440def95cc5be02p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_b1910012f17566919440def95cc5be02p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_b1910012f17566919440def95cc5be02p1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_b1910012f17566919440def95cc5be02p2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_b1910012f17566919440def95cc5be02p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_b1910012f17566919440def95cc5be02p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_b1910012f17566919440def95cc5be02p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_b1910012f17566919440def95cc5be02p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_b1910012f17566919440def95cc5be02p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_b1910012f17566919440def95cc5be02p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_b1910012f17566919440def95cc5be02p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_b1910012f17566919440def95cc5be02p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_b1910012f17566919440def95cc5be02p5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_b1910012f17566919440def95cc5be02p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_b1910012f17566919440def95cc5be02p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_b1910012f17566919440def95cc5be02p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_b1910012f17566919440def95cc5be02p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_b1910012f17566919440def95cc5be02p3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_b1910012f17566919440def95cc5be02p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_b1910012f17566919440def95cc5be02p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_b1910012f17566919440def95cc5be02p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_b1910012f17566919440def95cc5be02p@chr16:93971357..93971363, -

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