ZENBU-Reports is a scientific interactive data portal page builder. It use graphical interfaces to allow non-programmers to build scientific data analysis visualization pages using their own uploaded data.
ZENBU-reports is a mature system which has been used to build interactive websites for the following publications
- FANTOM_miRNA_atlas
- de Rie, Derek et al. “An integrated expression atlas of miRNAs and their promoters in human and mouse.” Nature biotechnology vol. 35,9 (2017): 872-878. doi:10.1038/nbt.3947
- Alam, Tanvir et al. “Comparative transcriptomics of primary cells in vertebrates.” Genome research vol. 30,7 (2020): 951-961. doi:10.1101/gr.255679.119
- FANTOM6
- Ramilowski, Jordan A et al. “Functional annotation of human long noncoding RNAs via molecular phenotyping.” Genome research vol. 30,7 (2020): 1060-1072. doi:10.1101/gr.254219.119
- FANTOM6_iPSC
- Yip et al. "Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types." Cell Rep. (2022): 41(13):111893.
doi: 10.1016/j.celrep.2022.111893
- FANTOM6 : Annotation of nuclear lncRNAs based on chromatin interactions
- Atlas of cardiac promoters and enhancers
- Deviatiiarov,R.M., et al. "An atlas of transcribed human cardiac promoters and enhancers reveals an important role of regulatory elements in heart failure." Nat. Cardiovasc. Res. (2023),
doi: 10.1038/s44161-022-00182-x
- Identification_of_therapeutic_targets_in_poor_outcome_AML_patients
- Hashimoto,M., et el. "Combined inhibition of XIAP and BCL2 drives maximal therapeutic efficacy in genetically diverse aggressive acute myeloid leukemia." Nat. Cancer (2021), 2, 340–356.
PMID: 35121960 doi: 10.1038/s43018-021-00177-w
- Profiling of transcribed cis-regulatory elements in single cells
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