Go to current FANTOM site


Citation: Please cite the following paper when you use the data here, in addition to the relevant papers.

  • Kawaji H, Severin J, Lizio M, Forrest AR, van Nimwegen E, Rehli M, Schroder K, Irvine K, Suzuki H, Carninci P, Hayashizaki Y, Daub CO. , "Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.", Nucleic Acids Res. 2010 Nov 12.
  • Kawaji H, Severin JM, Lizio M, Waterhouse AM, Katayama S, Irvine KM, Hume DA, Forrest ARR, Suzuki H, Carninci P, Hayashizaki Y, Daub CO., "The FANTOM Web Resource: from mammalian transcriptional landscape to its dynamic regulation", Genome Biology. 2009, 10:R40


  • Sep 17th, 2010: PPI and qRT-PCR for human and mouse have been added based on Cell 140(5):744-752
  • Aug 19th, 2010: GFF files of Array CGH has been added
  • April 19th, 2009: The first release of the data files.


CAGE tags, mapping, and promoters (clusters or aggregations of CAGE tags as units of promoter) for human and mouse.
Please find Meta-data for comprehensive information.
Raw and processed data files used in the FANTOM4 collaboration, which includes the CAGE data mentioned above. Plase find readme file at first.
Information about the experiments and data processing, including CAGE, microarray, ChIP-chip, etc. It is described in MAGE-TAB / ISA-TAB format. Its graphical representations generated by SDRF2GRAPH are also available.
 Genome Browser
GFF files used in the genome browser. Custom tracks on the UCSC Genome Browser are also available.
 Supplemental Materials

Supplemental materials of individual publications.

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