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Coexpression cluster:C219

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Full id: C219_nasal_Basophils_amniotic_Melanocyte_CD14_Osteoblast_duodenum



Phase1 CAGE Peaks

  Short description
Hg19::chr10:14060742..14060746,+ p@chr10:14060742..14060746
+
Hg19::chr10:68462506..68462526,- p@chr10:68462506..68462526
-
Hg19::chr10:71350259..71350265,- p@chr10:71350259..71350265
-
Hg19::chr10:97760040..97760043,- p1@ENST00000415692
Hg19::chr11:122906539..122906546,+ p1@RPL34P23
Hg19::chr11:14462294..14462296,+ p1@ENST00000534211
Hg19::chr11:43549565..43549568,+ p@chr11:43549565..43549568
+
Hg19::chr11:45892060..45892062,+ p6@CRY2
Hg19::chr11:74840786..74840787,+ p@chr11:74840786..74840787
+
Hg19::chr11:90493445..90493448,+ p@chr11:90493445..90493448
+
Hg19::chr12:40462453..40462466,- p1@RPL30P13
Hg19::chr12:51500538..51500541,+ p1@ENST00000469738
Hg19::chr12:7773133..7773138,+ p@chr12:7773133..7773138
+
Hg19::chr13:25940302..25940311,- p1@TCEB2P1
Hg19::chr13:66961456..66961458,+ p@chr13:66961456..66961458
+
Hg19::chr15:58985490..58985492,- p1@HSP90AB4P
Hg19::chr15:59700364..59700379,- p1@ENST00000557949
Hg19::chr16:30975509..30975526,+ p@chr16:30975509..30975526
+
Hg19::chr16:89228757..89228763,+ p1@AL133082
Hg19::chr17:16521327..16521342,- p1@ENST00000414124
Hg19::chr17:22021558..22021578,+ p@chr17:22021558..22021578
+
Hg19::chr17:43080709..43080712,+ p@chr17:43080709..43080712
+
Hg19::chr17:79268994..79268997,+ p@chr17:79268994..79268997
+
Hg19::chr18:5233213..5233222,- p@chr18:5233213..5233222
-
Hg19::chr18:57491179..57491188,+ p@chr18:57491179..57491188
+
Hg19::chr19:2809075..2809078,- -
p@chr19:2809075..2809078
Hg19::chr19:47061813..47061817,+ p1@ENST00000503632
Hg19::chr19:6413611..6413633,- p@chr19:6413611..6413633
-
Hg19::chr1:117318252..117318257,- p1@FTH1P22
Hg19::chr1:200297905..200297909,+ p1@ENST00000425737
Hg19::chr22:36294464..36294467,- p3@ENST00000436210
Hg19::chr2:12864309..12864314,- p@chr2:12864309..12864314
-
Hg19::chr2:130697797..130697815,- p1@ENST00000450665
Hg19::chr2:143848547..143848560,- p@chr2:143848547..143848560
-
Hg19::chr2:212163945..212163947,- p1@ENST00000413068
Hg19::chr2:24166687..24166695,+ p1@ENST00000445371
Hg19::chr2:38222461..38222479,+ p@chr2:38222461..38222479
+
Hg19::chr2:42760612..42760623,- p1@ENST00000399891
Hg19::chr3:109362891..109362900,- p@chr3:109362891..109362900
-
Hg19::chr3:113569614..113569616,- p1@ENST00000485426
Hg19::chr3:74150399..74150403,+ p1@ENST00000468766
Hg19::chr4:130879658..130879660,- p@chr4:130879658..130879660
-
Hg19::chr4:188720797..188720798,+ p@chr4:188720797..188720798
+
Hg19::chr4:22697096..22697099,+ +
p@chr4:22697096..22697099
Hg19::chr4:96566509..96566520,- p1@ENST00000475925
Hg19::chr4:99661773..99661783,+ p1@BTF3P13
Hg19::chr5:12004086..12004090,+ p@chr5:12004086..12004090
+
Hg19::chr5:138643069..138643082,+ p13@MATR3
Hg19::chr5:152872011..152872015,- p@chr5:152872011..152872015
-
Hg19::chr5:52199700..52199703,+ p1@ENST00000490961
Hg19::chr6:116580350..116580354,- p1@ENST00000435100
Hg19::chr6:170814648..170814653,- p@chr6:170814648..170814653
-
Hg19::chr6:35523619..35523622,+ p1@ENST00000403958
Hg19::chr6:76011104..76011109,+ p@chr6:76011104..76011109
+
Hg19::chr7:143785978..143785980,+ p@chr7:143785978..143785980
+
Hg19::chr7:152445973..152445978,+ p2@ATP5F1P3
Hg19::chr7:6647805..6647808,+ p@chr7:6647805..6647808
+
Hg19::chr8:22686593..22686594,+ p@chr8:22686593..22686594
+
Hg19::chr8:48505224..48505242,- p1@ENST00000517810
Hg19::chr9:106783310..106783311,+ p@chr9:106783310..106783311
+
Hg19::chr9:12278478..12278483,+ p@chr9:12278478..12278483
+
Hg19::chr9:30943567..30943573,+ p@chr9:30943567..30943573
+
Hg19::chr9:6835690..6835692,+ p@chr9:6835690..6835692
+
Hg19::chrX:102053161..102053167,+ p1@ENST00000413797
Hg19::chrX:119495912..119495921,+ p2@ATP1B4
Hg19::chrX:13492196..13492204,- p@chrX:13492196..13492204
-
Hg19::chrX:37621131..37621132,+ p@chrX:37621131..37621132
+


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression clusterSummary: Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter.
Analyst: Erik Arner

link to source dataset
data


No GOStat results

Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset

cell_data



Cell Type
Ontology termp-valuen
neurecto-epithelial cell1.66e-0720
melanocyte5.26e-0710
melanoblast5.26e-0710


Overrepresented TFBS (DNA) motifs on this co-expression clusterSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.11.47725e-12
MA0004.10.155513
MA0006.10.0797987
MA0007.10.00975146
MA0009.10.534275
MA0014.12.74149e-10
MA0017.10.386902
MA0019.11.01431
MA0024.10.123418
MA0025.10.267499
MA0027.11.61382
MA0028.10.0113591
MA0029.10.415607
MA0030.10.798055
MA0031.10.658009
MA0038.10.291932
MA0040.10.83702
MA0041.10.58397
MA0042.10.751637
MA0043.10.18124
MA0046.10.518588
MA0048.10.00319126
MA0050.11.83555
MA0051.11.21674
MA0052.11.97362
MA0055.10.0548349
MA0056.10
MA0057.10.0145102
MA0058.10.0682701
MA0059.10.15246
MA0060.10.000716918
MA0061.10.0742413
MA0063.10
MA0066.10.0297766
MA0067.10.405321
MA0068.10.0151184
MA0069.10.172349
MA0070.10.961302
MA0071.10.446977
MA0072.10.490821
MA0073.11.79549e-07
MA0074.10.52597
MA0076.10.00462536
MA0077.12.13635
MA0078.10.452013
MA0081.10.0674778
MA0083.10.185555
MA0084.10.561381
MA0087.10.487382
MA0088.10.00694532
MA0089.10
MA0090.10.0917029
MA0091.10.537042
MA0092.10.0419783
MA0093.10.0826884
MA0095.10
MA0098.10
MA0100.10.03292
MA0101.10.171571
MA0103.10.817045
MA0105.10.00387962
MA0106.10.155837
MA0107.10.0706004
MA0108.21.0848
MA0109.10
MA0111.10.611344
MA0113.10.170299
MA0114.10.126777
MA0115.10.345872
MA0116.10.074232
MA0117.10.589596
MA0119.10.248494
MA0122.10.628674
MA0124.10.845227
MA0125.10.255162
MA0130.10
MA0131.10.223732
MA0132.10
MA0133.10
MA0135.12.43898
MA0136.10.0313015
MA0139.10.0122987
MA0140.10.0212354
MA0141.10.150106
MA0142.10.282596
MA0143.10.385987
MA0144.10.288548
MA0145.18.17137e-05
MA0146.19.57363e-05
MA0147.10.034749
MA0148.10.603117
MA0149.10.0195172
MA0062.20.00141632
MA0035.20.230956
MA0039.28.2439e-09
MA0138.20.0565129
MA0002.20.16552
MA0137.20.20042
MA0104.20.0115204
MA0047.20.337846
MA0112.20.00407553
MA0065.20.106595
MA0150.10.544055
MA0151.10
MA0152.10.455865
MA0153.10.243737
MA0154.10.00348058
MA0155.10.000438957
MA0156.10.0437233
MA0157.10.537774
MA0158.10
MA0159.10.0351055
MA0160.10.394569
MA0161.10
MA0162.11.66362e-05
MA0163.13.82674e-06
MA0164.10.181671
MA0080.20.0330891
MA0018.20.157032
MA0099.20.0976745
MA0079.20
MA0102.20.5938
MA0258.10.00584348
MA0259.10.0396527
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysisSummary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained.
Analyst: Erik Arner

link to source dataset

data


No analysis results for this cluster

Relative expression of the co-expression clusterSummary:Co-expression clusters are compared against FANTOM5 samples to obtain relative expression.
Analyst:NA

link to data source
data