Personal tools

MacroAPE 1083:9-TTTCSCT

From FANTOM5_SSTAR

Jump to: navigation, search

Full Name: 9-TTTCSCT,CNhs13465,BestGuess:PRDM1_f1_HM09(0.744373968197745),T:2971.0(42.71%),B:14173.2(33.73%),P:1e-54

Motif matrix
POACGT
12.9712.9712.9712962.087
256.449344.6362.9712566.944
3139.637944.7782.9711883.614
42.9712213.395490.215264.419
5415.941434.993995.285124.782
620.7972935.34811.8842.971
72.971843.764338.6941785.571

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

IRF1#MA0050.120.002054660.9780190.9899887TTTCCCTGGTTTCACTTTC-
IRF2#MA0051.170.00241011.147210.9899887TTTCCCTGTTTTGCTTTCACTTTCC-
id1#MA0120.100.004664152.220140.9899887TTTCCCTTTTTCCTTTTCG+
SPIB#MA0081.100.005548132.640910.9899887TTTCCCTTTCCTCT-
CUP2#MA0287.130.006806373.239830.9899887TTTCCCTCATTTCTGCTG-
Klf4#MA0039.120.007910213.765260.9899887TTTCCCTCCTTCCTTTA-
dl_1#MA0022.160.008568774.078730.9899886TTTCCCTGGGGTTTTTCCC+
YRM1#MA0438.110.009698814.616630.9899887TTTCCCTATTTCCGT-
NFKB1#MA0105.150.01027364.890240.9899886TTTCCCTGGGGATTCCCC+
STB3#MA0390.1100.01206525.743020.9899887TTTCCCTGTCCAAAATTTTTCACTCTGG+
YPR196W#MA0437.110.01212095.769560.9899887TTTCCCTATTTCTCCG+
MZF1_5-13#MA0057.100.01247885.939930.9899887TTTCCCTTTCCCCCTAC-
STAT1#MA0137.130.0142016.7596717TTTCCCTCAGTTTCATTTTCC-
E2F1#MA0024.100.01559077.4211717TTTCCCTTTTGGCGC+
SWI4#MA0401.100.01639527.804117TTTCCCTTTTCGCGT-
RDR1#MA0360.110.02097479.9839617TTTCCCTGTTCCGCA-