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CL:0000192

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Name:smooth muscle cell
Namespace:FANTOM
Definition:"A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast)." [MESH:A.11.620.520, MESH:D032389, PMID:9315361]
Xrefs:
links:

BTO:0004576

FMA:14072
Synonyms: "myocytes, smooth muscle" EXACT [MESH:D032389]
"non-striated muscle cell" EXACT []
"SMCs" EXACT [PMID:9315361]
"smooth muscle fiber" EXACT []
Alt_id: CL:0000191


Ontology association

Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.



link to ontology dataset


data

Parents

is_a:CL:0008000(non-striated muscle cell),CL:0008007(visceral muscle cell)
develops_from:CL:0000514(smooth muscle myoblast)



Children


is a:[[]] (vascular associated smooth muscle cell)[[]] (enteric smooth muscle cell)[[]] (smooth muscle cell of bladder)[[]] (bronchial smooth muscle cell)[[]] (smooth muscle cell of the esophagus)[[]] (smooth muscle cell of trachea)[[]] (uterine smooth muscle cell)[[]] (smooth muscle cell of prostate)
derives from:FF:0000167 (smooth muscle cell sample)

Ontology Tree: Loaded from BioPortal


FF samples

It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens) Mouse (Mus musculus)



Enrichment analysis: top 100 FFCP enriched with this ontology term
TOP 100 FANTOM5 Cage Peaks enriched with CL:0000192 (smooth muscle cell), sorted by p-values
Analyst: Hideya Kawaji



link to source dataset
human : data

mouse : data

P-valueFFCPShort description
1.58e-86FFCP_PHASE2:Mm9::chrX:160839744..160839754,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chrX:160839744..160839754, +
1.58e-86FFCP_PHASE1:Mm9::chrX:160839744..160839754,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chrX:160839744..160839754, +
1.58e-86FFCP_PHASE1:Mm9::chr2:112043522..112043530,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr2:112043522..112043530, -
1.58e-86FFCP_PHASE2:Mm9::chr17:87574327..87574332,+#_dd44eebcd849e13d17ead1f28e6e8ee0+, p@chr17:87574327..87574332
1.58e-86FFCP_PHASE1:Mm9::chr2:178190171..178190178,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr2:178190171..178190178, +
1.58e-86FFCP_PHASE2:Mm9::chr8:69228447..69228492,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr8:69228447..69228492, +
1.58e-86FFCP_PHASE2:Mm9::chr17:14827154..14827169,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr17:14827154..14827169, -
1.58e-86FFCP_PHASE2:Mm9::chr2:112043522..112043530,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr2:112043522..112043530, -
1.58e-86FFCP_PHASE1:Mm9::chr11:50416871..50416882,+#_dd44eebcd849e13d17ead1f28e6e8ee0p5@Adamts2
1.58e-86FFCP_PHASE2:Mm9::chr2:178190171..178190178,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr2:178190171..178190178, +
1.58e-86FFCP_PHASE2:Mm9::chr17:14802633..14802637,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr17:14802633..14802637, -
1.58e-86FFCP_PHASE1:Mm9::chr17:14827154..14827169,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr17:14827154..14827169, -
1.58e-86FFCP_PHASE2:Mm9::chr11:50416871..50416882,+#_dd44eebcd849e13d17ead1f28e6e8ee0p5@Adamts2
1.58e-86FFCP_PHASE1:Mm9::chr17:14802633..14802637,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr17:14802633..14802637, -
1.58e-86FFCP_PHASE1:Mm9::chr8:69228447..69228492,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr8:69228447..69228492, +
1.58e-86FFCP_PHASE1:Mm9::chr17:87574327..87574332,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr17:87574327..87574332, +
9.37e-70FFCP_PHASE1:Hg19::chr6:53359400..53359406,+#_4b03f63a090e767018f803386697dd11+, p@chr6:53359400..53359406
9.37e-70FFCP_PHASE2:Hg19::chr6:53359400..53359406,+#_4b03f63a090e767018f803386697dd11p@chr6:53359400..53359406, +
1.33e-65FFCP_PHASE1:Mm9::chr11:118164535..118164544,-#_0aaa2917831255f58d49f25f052c9873p@chr11:118164535..118164544, -
1.33e-65FFCP_PHASE2:Mm9::chrX:160840048..160840057,+#_0aaa2917831255f58d49f25f052c9873p@chrX:160840048..160840057, +
1.33e-65FFCP_PHASE1:Mm9::chr17:71340031..71340044,-#_0aaa2917831255f58d49f25f052c9873p5@Myl12b
1.33e-65FFCP_PHASE2:Mm9::chr6:128920492..128920498,-#_0aaa2917831255f58d49f25f052c9873p@chr6:128920492..128920498, -
1.33e-65FFCP_PHASE1:Mm9::chrX:160840025..160840037,+#_0aaa2917831255f58d49f25f052c9873p@chrX:160840025..160840037, +
1.33e-65FFCP_PHASE2:Mm9::chr11:118164535..118164544,-#_0aaa2917831255f58d49f25f052c9873p@chr11:118164535..118164544, -
1.33e-65FFCP_PHASE1:Mm9::chr6:128920492..128920498,-#_0aaa2917831255f58d49f25f052c9873p@chr6:128920492..128920498, -
1.33e-65FFCP_PHASE1:Mm9::chrX:160840048..160840057,+#_0aaa2917831255f58d49f25f052c9873p@chrX:160840048..160840057, +
1.33e-65FFCP_PHASE1:Mm9::chr8:69221163..69221172,+#_0aaa2917831255f58d49f25f052c9873p6@Npy1r
1.33e-65FFCP_PHASE2:Mm9::chr17:71340031..71340044,-#_0aaa2917831255f58d49f25f052c9873p5@Myl12b
1.33e-65FFCP_PHASE2:Mm9::chr8:69221163..69221172,+#_0aaa2917831255f58d49f25f052c9873p6@Npy1r
1.33e-65FFCP_PHASE2:Mm9::chrX:160840025..160840037,+#_0aaa2917831255f58d49f25f052c9873p@chrX:160840025..160840037, +
2.21e-65FFCP_PHASE1:Mm9::chr4:145000183..145000220,+#_50fb5f288f5ca571e58f788349f86beep1@ENSMUST00000150529
2.21e-65FFCP_PHASE2:Mm9::chr4:145000183..145000220,+#_50fb5f288f5ca571e58f788349f86beep1@ENSMUST00000150529
3.28e-58FFCP_PHASE2:Mm9::chr1:127573425..127573432,+#_24e57cb8e99c9c35a9a56b6be3749391p12@Gpr39
3.28e-58FFCP_PHASE2:Mm9::chr17:87544959..87544962,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr17:87544959..87544962, +
3.28e-58FFCP_PHASE2:Mm9::chr17:14817013..14817022,-#_24e57cb8e99c9c35a9a56b6be3749391p@chr17:14817013..14817022, -
3.28e-58FFCP_PHASE2:Mm9::chr10:96946110..96946113,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr10:96946110..96946113, +
3.28e-58FFCP_PHASE2:Mm9::chr14:24251697..24251707,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr14:24251697..24251707, +
3.28e-58FFCP_PHASE1:Mm9::chr8:69857155..69857159,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr8:69857155..69857159, +
3.28e-58FFCP_PHASE1:Mm9::chr17:14817013..14817022,-#_24e57cb8e99c9c35a9a56b6be3749391p@chr17:14817013..14817022, -
3.28e-58FFCP_PHASE2:Mm9::chr10:33816181..33816195,-#_24e57cb8e99c9c35a9a56b6be3749391p@chr10:33816181..33816195, -
3.28e-58FFCP_PHASE1:Mm9::chr10:33816181..33816195,-#_24e57cb8e99c9c35a9a56b6be3749391p@chr10:33816181..33816195, -
3.28e-58FFCP_PHASE1:Mm9::chr17:87544959..87544962,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr17:87544959..87544962, +
3.28e-58FFCP_PHASE1:Mm9::chr1:127573425..127573432,+#_24e57cb8e99c9c35a9a56b6be3749391p12@Gpr39
3.28e-58FFCP_PHASE1:Mm9::chrX:160811352..160811356,-#_24e57cb8e99c9c35a9a56b6be3749391-, p@chrX:160811352..160811356
3.28e-58FFCP_PHASE1:Mm9::chrX:160839012..160839023,+#_24e57cb8e99c9c35a9a56b6be3749391p@chrX:160839012..160839023, +
3.28e-58FFCP_PHASE2:Mm9::chrX:160811352..160811356,-#_24e57cb8e99c9c35a9a56b6be3749391p@chrX:160811352..160811356, -
3.28e-58FFCP_PHASE2:Mm9::chr8:69857155..69857159,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr8:69857155..69857159, +
3.28e-58FFCP_PHASE2:Mm9::chr17:78907550..78907557,+#_24e57cb8e99c9c35a9a56b6be3749391p8@Vit
3.28e-58FFCP_PHASE1:Mm9::chr17:78907550..78907557,+#_24e57cb8e99c9c35a9a56b6be3749391p8@Vit
3.28e-58FFCP_PHASE1:Mm9::chr14:24251697..24251707,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr14:24251697..24251707, +
3.28e-58FFCP_PHASE2:Mm9::chrX:160839012..160839023,+#_24e57cb8e99c9c35a9a56b6be3749391p@chrX:160839012..160839023, +
3.28e-58FFCP_PHASE1:Mm9::chr10:96946110..96946113,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr10:96946110..96946113, +
4.9e-53FFCP_PHASE1:Mm9::chr10:67821185..67821217,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr10:67821185..67821217, -
4.9e-53FFCP_PHASE2:Mm9::chr7:91081998..91082010,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr7:91081998..91082010, -
4.9e-53FFCP_PHASE2:Mm9::chr17:29227828..29227839,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr17:29227828..29227839, -
4.9e-53FFCP_PHASE1:Mm9::chr7:91081998..91082010,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr7:91081998..91082010, -
4.9e-53FFCP_PHASE1:Mm9::chr14:24251717..24251731,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr14:24251717..24251731, +
4.9e-53FFCP_PHASE1:Mm9::chr8:69221150..69221161,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp5@Npy1r
4.9e-53FFCP_PHASE1:Mm9::chr10:67598037..67598049,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr10:67598037..67598049, -
4.9e-53FFCP_PHASE1:Mm9::chr17:29227828..29227839,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr17:29227828..29227839, -
4.9e-53FFCP_PHASE2:Mm9::chr8:69221150..69221161,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp5@Npy1r
4.9e-53FFCP_PHASE1:Mm9::chr13:113253807..113253846,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp4@Il6st
4.9e-53FFCP_PHASE2:Mm9::chr10:67821185..67821217,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr10:67821185..67821217, -
4.9e-53FFCP_PHASE2:Mm9::chr14:24251717..24251731,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr14:24251717..24251731, +
4.9e-53FFCP_PHASE2:Mm9::chr10:67598037..67598049,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr10:67598037..67598049, -
4.9e-53FFCP_PHASE1:Mm9::chr2:113589030..113589077,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr2:113589030..113589077, -
4.9e-53FFCP_PHASE2:Mm9::chr13:113253807..113253846,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp4@Il6st
4.9e-53FFCP_PHASE2:Mm9::chr2:113589030..113589077,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr2:113589030..113589077, -
6.91e-53FFCP_PHASE2:Hg19::chr11:102661517..102661541,-#_0d9a8634fea897b0035bf9915fe27578p@chr11:102661517..102661541, -
6.91e-53FFCP_PHASE1:Hg19::chr11:102661517..102661541,-#_0d9a8634fea897b0035bf9915fe27578p@chr11:102661517..102661541, -
7.35e-53FFCP_PHASE2:Mm9::chr4:58219542..58219545,-#_013dc3abf568aaac1cc9b9e622355b67p11@Svep1
7.35e-53FFCP_PHASE1:Mm9::chr4:58219542..58219545,-#_013dc3abf568aaac1cc9b9e622355b67p11@Svep1
1.1e-52FFCP_PHASE1:Mm9::chrX:160838787..160838800,+#_662f25b7a9e29e6a939bc25e610d52c1p@chrX:160838787..160838800, +
1.1e-52FFCP_PHASE2:Mm9::chrX:160838787..160838800,+#_662f25b7a9e29e6a939bc25e610d52c1p@chrX:160838787..160838800, +
1.65e-52FFCP_PHASE2:Mm9::chr1:137662814..137662817,+#_bbc18b1a34f62ef81543b7b3e23112a6p5@Phlda3
1.65e-52FFCP_PHASE1:Mm9::chr1:137662814..137662817,+#_bbc18b1a34f62ef81543b7b3e23112a6p5@Phlda3
2.52e-52FFCP_PHASE2:Hg19::chr4:74703497..74703511,+#_6302d5152884ff54082f7165ea5a5ca5p@chr4:74703497..74703511, +
2.52e-52FFCP_PHASE1:Hg19::chr4:74703497..74703511,+#_6302d5152884ff54082f7165ea5a5ca5p@chr4:74703497..74703511, +
5.51e-52FFCP_PHASE2:Mm9::chr2:65009852..65009866,-#_79016b64a55830bc0163dacc3b5b8855p@chr2:65009852..65009866, -
5.51e-52FFCP_PHASE1:Mm9::chr2:65009852..65009866,-#_79016b64a55830bc0163dacc3b5b8855p@chr2:65009852..65009866, -
5.68e-52FFCP_PHASE2:Hg19::chr4:7846444..7846449,-#_3d781c85e3d3b760f6338e6e7bc6b76fp@chr4:7846444..7846449, -
5.68e-52FFCP_PHASE1:Hg19::chr4:7846444..7846449,-#_3d781c85e3d3b760f6338e6e7bc6b76fp@chr4:7846444..7846449, -
2.41e-47FFCP_PHASE1:Hg19::chr2:134548872..134548879,-#_6b8525e31225e32011389c2221f14697p@chr2:134548872..134548879, -
2.41e-47FFCP_PHASE2:Hg19::chr2:134548872..134548879,-#_6b8525e31225e32011389c2221f14697p@chr2:134548872..134548879, -
2.91e-46FFCP_PHASE1:Hg19::chr4:74703963..74703975,+#_d815ef8583cd71c076d39b0c40d078d6p@chr4:74703963..74703975, +
2.91e-46FFCP_PHASE2:Hg19::chr4:74703963..74703975,+#_d815ef8583cd71c076d39b0c40d078d6p@chr4:74703963..74703975, +
1.18e-44FFCP_PHASE1:Mm9::chr2:178190136..178190151,+#_bf069025b80258c733dbb19a2a4e7006p@chr2:178190136..178190151, +
1.18e-44FFCP_PHASE2:Mm9::chr2:178190136..178190151,+#_bf069025b80258c733dbb19a2a4e7006p@chr2:178190136..178190151, +
1.18e-44FFCP_PHASE1:Mm9::chr1:127573864..127573879,+#_bf069025b80258c733dbb19a2a4e7006p10@Gpr39
1.18e-44FFCP_PHASE1:Mm9::chr13:119579287..119579292,+#_bf069025b80258c733dbb19a2a4e7006p@chr13:119579287..119579292, +
1.18e-44FFCP_PHASE2:Mm9::chr17:14813242..14813246,-#_bf069025b80258c733dbb19a2a4e7006p@chr17:14813242..14813246, -
1.18e-44FFCP_PHASE2:Mm9::chr1:127573864..127573879,+#_bf069025b80258c733dbb19a2a4e7006p10@Gpr39
1.18e-44FFCP_PHASE1:Mm9::chr11:86417559..86417568,+#_bf069025b80258c733dbb19a2a4e7006p@chr11:86417559..86417568, +
1.18e-44FFCP_PHASE2:Mm9::chr11:86417559..86417568,+#_bf069025b80258c733dbb19a2a4e7006p@chr11:86417559..86417568, +
1.18e-44FFCP_PHASE2:Mm9::chr13:119579287..119579292,+#_bf069025b80258c733dbb19a2a4e7006p@chr13:119579287..119579292, +
1.18e-44FFCP_PHASE1:Mm9::chrX:160838683..160838694,+#_bf069025b80258c733dbb19a2a4e7006p@chrX:160838683..160838694, +
1.18e-44FFCP_PHASE1:Mm9::chr17:14813242..14813246,-#_bf069025b80258c733dbb19a2a4e7006p@chr17:14813242..14813246, -
1.18e-44FFCP_PHASE2:Mm9::chrX:160838683..160838694,+#_bf069025b80258c733dbb19a2a4e7006p@chrX:160838683..160838694, +
1.66e-44FFCP_PHASE1:Mm9::chr13:119503185..119503195,+#_5a7182626c782173895b1888236af834p9@Fgf10
1.66e-44FFCP_PHASE2:Mm9::chr13:119503185..119503195,+#_5a7182626c782173895b1888236af834p9@Fgf10