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NonredundantMotifs:29

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Representative Motif


Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon
May 2013, Collection Name: Non-redundant known motifs
Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.
207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name  :non-redundant29
  • db  :HOCOMOCO
  • Id  :GCR_do
  • name  :
  • score  :0.22254308897291314
  • External refs:
EntrezGene:2908
UniProt:2908

  • Internal refs:
EntrezGene:2908


Motif matrix
P0ACGT
11129.59174000961904.23655669878041807.362866734603281.0045628124061
22413.167017203538343.7245219975881341641.054165372529724.250021681728235
3521.353817507865280.965536468948333467.337193027151452.53917925139312
42816.4674474271515284.1860912204384822.1656017693597199.37658583842457
53847.697567504525550.09635718951012111.13454891187209113.26725264946202
6240.92934115732852963.2070020338206832.499389587574185.55999347664753
73338.7139791267177113.99177355345608367.26423995353167302.22573362166344
8791.5442504458142485.085152901022641594.93085033647551250.6354725720855
91520.140159950709779.228552986429801.15169782459541021.6753154936646
101224.34233751507081299.99422445789581230.1570743392404367.702089943193
111299.273462866743580.1304511700988366.13878095471771876.6530312638354
12461.22541592044746246.01377132244333070.113571803517344.8429672089572
13588.5894133233296345.9526174770324957.88907929316262229.764616161862
14813.46486766721431213.1926900810154906.93445932308761188.6037091840824
15408.032731003317452749.1017855220593559.1303908958896405.9308188341049
161057.1562253642041403.753823720879507.77082505609971153.5148521142146
171371.7429648377574427.691851046825431375.5279260593618947.2329843114555
181130.4703615085225566.31774902298591699.4526160490173725.9549996748707

Sub Motif Members