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Revision as of 08:37, 15 June 2012

Name:tracheal epithelial cell
Namespace:cell
Definition:"An epithelial cell found in the trachea." [GOC:tfm]
Xrefs:
links:

FBbt:00005038

FMA:74793
Synonyms: "tracheocyte" EXACT []
Alt_id: CL:1000474


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0002202(epithelial cell of tracheobronchial tree)
develops_from:CL:0000377(tracheoblast)
part_of:UBERON:0003126(trachea)



Children


derives from:FF:0000189 (human tracheal epithelial cell sample),FF:0000645 (tracheal ciliated cell differentiation sample),FF:0000652 (tracheal ciliated cell line sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11292-117A5 (Tracheal Epithelial Cells, donor1)
  • 11369-118A1 (Tracheal Epithelial Cells, donor2)
  • 11441-118I1 (Tracheal Epithelial Cells, donor3)
  • 13367-143G1 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13368-143G2 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13369-143G3 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13370-143G4 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13371-143G5 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13372-143G6 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13373-143G7 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)

... further results Mouse (Mus musculus)

  • 11292-117A5 (Tracheal Epithelial Cells, donor1)
  • 11369-118A1 (Tracheal Epithelial Cells, donor2)
  • 11441-118I1 (Tracheal Epithelial Cells, donor3)
  • 13367-143G1 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13368-143G2 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13369-143G3 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13370-143G4 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13371-143G5 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13372-143G6 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
  • 13373-143G7 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000307 (tracheal epithelial cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.58e-86FFCP PHASE2:Mm9::chr1:151954385..151954387,+#_8441be581e807ad04d08641d9b84b504p@chr1:151954385..151954387, +
1.58e-86FFCP PHASE1:Mm9::chr13:115722413..115722430,+#_8441be581e807ad04d08641d9b84b504p@chr13:115722413..115722430, +
1.58e-86FFCP PHASE1:Mm9::chr6:147205603..147205610,+#_8441be581e807ad04d08641d9b84b504p@chr6:147205603..147205610, +
1.58e-86FFCP PHASE1:Mm9::chr5:135422125..135422141,-#_8441be581e807ad04d08641d9b84b504p@chr5:135422125..135422141, -
1.58e-86FFCP PHASE1:Mm9::chr9:110941246..110941254,+#_8441be581e807ad04d08641d9b84b504p@chr9:110941246..110941254, +
1.58e-86FFCP PHASE2:Mm9::chr2:164393992..164394012,-#_8441be581e807ad04d08641d9b84b504-, p@chr2:164393992..164394012
1.58e-86FFCP PHASE2:Mm9::chr13:115722413..115722430,+#_8441be581e807ad04d08641d9b84b504p@chr13:115722413..115722430, +
1.58e-86FFCP PHASE1:Mm9::chr1:108303887..108303893,+#_8441be581e807ad04d08641d9b84b504p@chr1:108303887..108303893, +
1.58e-86FFCP PHASE2:Mm9::chr2:60538178..60538182,-#_8441be581e807ad04d08641d9b84b504p@chr2:60538178..60538182, -
1.58e-86FFCP PHASE2:Mm9::chr4:88563185..88563192,-#_8441be581e807ad04d08641d9b84b504p@chr4:88563185..88563192, -
1.58e-86FFCP PHASE1:Mm9::chr5:135420996..135421000,+#_8441be581e807ad04d08641d9b84b504p@chr5:135420996..135421000, +
1.58e-86FFCP PHASE2:Mm9::chr17:25885558..25885567,+#_8441be581e807ad04d08641d9b84b504p@chr17:25885558..25885567, +
1.58e-86FFCP PHASE2:Mm9::chr11:4165247..4165267,+#_8441be581e807ad04d08641d9b84b504p@chr11:4165247..4165267, +
1.58e-86FFCP PHASE1:Mm9::chr12:17549752..17549763,+#_8441be581e807ad04d08641d9b84b504p@chr12:17549752..17549763, +
1.58e-86FFCP PHASE1:Mm9::chr4:88696177..88696184,+#_8441be581e807ad04d08641d9b84b504p2@Gm12603
1.58e-86FFCP PHASE1:Mm9::chr6:147205677..147205683,+#_8441be581e807ad04d08641d9b84b504p@chr6:147205677..147205683, +
1.58e-86FFCP PHASE2:Mm9::chr1:108303887..108303893,+#_8441be581e807ad04d08641d9b84b504p@chr1:108303887..108303893, +
1.58e-86FFCP PHASE2:Mm9::chr11:86461733..86461747,-#_8441be581e807ad04d08641d9b84b504p@chr11:86461733..86461747, -
1.58e-86FFCP PHASE1:Mm9::chr11:4165247..4165267,+#_8441be581e807ad04d08641d9b84b504p@chr11:4165247..4165267, +
1.58e-86FFCP PHASE2:Mm9::chr6:147338308..147338339,-#_8441be581e807ad04d08641d9b84b504p@chr6:147338308..147338339, -
1.58e-86FFCP PHASE2:Mm9::chr5:135420996..135421000,+#_8441be581e807ad04d08641d9b84b504p@chr5:135420996..135421000, +
1.58e-86FFCP PHASE1:Mm9::chr11:86461733..86461747,-#_8441be581e807ad04d08641d9b84b504p@chr11:86461733..86461747, -
1.58e-86FFCP PHASE1:Mm9::chr2:164389604..164389615,+#_8441be581e807ad04d08641d9b84b504p@chr2:164389604..164389615, +
1.58e-86FFCP PHASE2:Mm9::chr3:89487103..89487111,-#_8441be581e807ad04d08641d9b84b504p@chr3:89487103..89487111, -
1.58e-86FFCP PHASE2:Mm9::chr9:110941233..110941240,+#_8441be581e807ad04d08641d9b84b504p@chr9:110941233..110941240, +
1.58e-86FFCP PHASE2:Mm9::chr15:101258041..101258052,+#_8441be581e807ad04d08641d9b84b504+, p@chr15:101258041..101258052
1.58e-86FFCP PHASE1:Mm9::chr2:60538178..60538182,-#_8441be581e807ad04d08641d9b84b504p@chr2:60538178..60538182, -
1.58e-86FFCP PHASE2:Mm9::chr13:72401408..72401416,-#_8441be581e807ad04d08641d9b84b504p@chr13:72401408..72401416, -
1.58e-86FFCP PHASE1:Mm9::chr15:101258041..101258052,+#_8441be581e807ad04d08641d9b84b504p@chr15:101258041..101258052, +
1.58e-86FFCP PHASE1:Mm9::chr1:151954385..151954387,+#_8441be581e807ad04d08641d9b84b504p@chr1:151954385..151954387, +
1.58e-86FFCP PHASE2:Mm9::chr11:100006864..100006873,+#_8441be581e807ad04d08641d9b84b504p@chr11:100006864..100006873, +
1.58e-86FFCP PHASE2:Mm9::chr6:147205603..147205610,+#_8441be581e807ad04d08641d9b84b504p@chr6:147205603..147205610, +
1.58e-86FFCP PHASE1:Mm9::chr2:164393992..164394012,-#_8441be581e807ad04d08641d9b84b504p@chr2:164393992..164394012, -
1.58e-86FFCP PHASE1:Mm9::chr4:88563185..88563192,-#_8441be581e807ad04d08641d9b84b504p@chr4:88563185..88563192, -
1.58e-86FFCP PHASE1:Mm9::chr6:147338308..147338339,-#_8441be581e807ad04d08641d9b84b504p@chr6:147338308..147338339, -
1.58e-86FFCP PHASE1:Mm9::chr9:110941233..110941240,+#_8441be581e807ad04d08641d9b84b504p@chr9:110941233..110941240, +
1.58e-86FFCP PHASE1:Mm9::chr13:115644652..115644657,-#_8441be581e807ad04d08641d9b84b504p@chr13:115644652..115644657, -
1.58e-86FFCP PHASE1:Mm9::chr17:25885558..25885567,+#_8441be581e807ad04d08641d9b84b504p@chr17:25885558..25885567, +
1.58e-86FFCP PHASE1:Mm9::chr5:91198876..91198885,+#_8441be581e807ad04d08641d9b84b504p@chr5:91198876..91198885, +
1.58e-86FFCP PHASE2:Mm9::chr2:164389604..164389615,+#_8441be581e807ad04d08641d9b84b504p@chr2:164389604..164389615, +
1.58e-86FFCP PHASE2:Mm9::chr9:110941246..110941254,+#_8441be581e807ad04d08641d9b84b504p@chr9:110941246..110941254, +
1.58e-86FFCP PHASE2:Mm9::chr11:96608719..96608730,-#_8441be581e807ad04d08641d9b84b504p1@ENSMUST00000170876, p1@uc011ydj.1
1.58e-86FFCP PHASE2:Mm9::chr5:91198876..91198885,+#_8441be581e807ad04d08641d9b84b504p@chr5:91198876..91198885, +
1.58e-86FFCP PHASE2:Mm9::chr6:147205677..147205683,+#_8441be581e807ad04d08641d9b84b504p@chr6:147205677..147205683, +
1.58e-86FFCP PHASE2:Mm9::chr12:17549752..17549763,+#_8441be581e807ad04d08641d9b84b504p@chr12:17549752..17549763, +
1.58e-86FFCP PHASE2:Mm9::chr13:115644652..115644657,-#_8441be581e807ad04d08641d9b84b504p@chr13:115644652..115644657, -
1.58e-86FFCP PHASE1:Mm9::chr11:96608719..96608730,-#_8441be581e807ad04d08641d9b84b504p1@ENSMUST00000170876, p1@uc011ydj.1
1.58e-86FFCP PHASE2:Mm9::chr4:88696144..88696152,+#_8441be581e807ad04d08641d9b84b504p3@Gm12603
1.58e-86FFCP PHASE1:Mm9::chr3:89487103..89487111,-#_8441be581e807ad04d08641d9b84b504-, p@chr3:89487103..89487111
1.58e-86FFCP PHASE1:Mm9::chr5:91199084..91199088,-#_8441be581e807ad04d08641d9b84b504-, p@chr5:91199084..91199088
1.58e-86FFCP PHASE1:Mm9::chr16:32641594..32641601,+#_8441be581e807ad04d08641d9b84b504p@chr16:32641594..32641601, +
1.58e-86FFCP PHASE2:Mm9::chr5:135422125..135422141,-#_8441be581e807ad04d08641d9b84b504-, p@chr5:135422125..135422141
1.58e-86FFCP PHASE1:Mm9::chr11:100006864..100006873,+#_8441be581e807ad04d08641d9b84b504p@chr11:100006864..100006873, +
1.58e-86FFCP PHASE1:Mm9::chr13:72401408..72401416,-#_8441be581e807ad04d08641d9b84b504p@chr13:72401408..72401416, -
1.58e-86FFCP PHASE2:Mm9::chr5:91199084..91199088,-#_8441be581e807ad04d08641d9b84b504p@chr5:91199084..91199088, -
1.58e-86FFCP PHASE1:Mm9::chr4:88696144..88696152,+#_8441be581e807ad04d08641d9b84b504p3@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr4:88696177..88696184,+#_8441be581e807ad04d08641d9b84b504p2@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr16:32641594..32641601,+#_8441be581e807ad04d08641d9b84b504p@chr16:32641594..32641601, +
1.28e-84FFCP PHASE2:Hg19::chr7:135018332..135018336,+#_07c83fb5cad9ff9bf4d92cc179b4c7a8p@chr7:135018332..135018336, +
1.28e-84FFCP PHASE1:Hg19::chr7:135018332..135018336,+#_07c83fb5cad9ff9bf4d92cc179b4c7a8+, p@chr7:135018332..135018336
1.66e-74FFCP PHASE1:Hg19::chr5:52627415..52627422,-#_ffbc1a65120073c67e84cd4e54aab24dp@chr5:52627415..52627422, -
1.66e-74FFCP PHASE2:Hg19::chr5:52627415..52627422,-#_ffbc1a65120073c67e84cd4e54aab24dp@chr5:52627415..52627422, -
9.82e-67FFCP PHASE1:Hg19::chr4:74977698..74977700,+#_72aef0f663248a2534cc38fb07263042p@chr4:74977698..74977700, +
9.82e-67FFCP PHASE2:Hg19::chr4:74977698..74977700,+#_72aef0f663248a2534cc38fb07263042p@chr4:74977698..74977700, +
1.23e-66FFCP PHASE1:Hg19::chr4:26089776..26089781,+#_b463511c7695ffeb53c65a4628d7a77ep@chr4:26089776..26089781, +
1.23e-66FFCP PHASE2:Hg19::chr4:26089776..26089781,+#_b463511c7695ffeb53c65a4628d7a77ep@chr4:26089776..26089781, +
1.71e-66FFCP PHASE2:Hg19::chr5:138751193..138751196,-#_b641ed410d619f015c99302dc2364aa2p@chr5:138751193..138751196, -
1.71e-66FFCP PHASE1:Hg19::chr5:138751193..138751196,-#_b641ed410d619f015c99302dc2364aa2p@chr5:138751193..138751196, -
3.35e-66FFCP PHASE1:Hg19::chr11:46934513..46934519,+#_aaa41d7390a63ae584164233aa03fa23p@chr11:46934513..46934519, +
3.35e-66FFCP PHASE2:Hg19::chr11:46934513..46934519,+#_aaa41d7390a63ae584164233aa03fa23p@chr11:46934513..46934519, +
1.33e-65FFCP PHASE1:Mm9::chr11:4164303..4164316,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr11:4164303..4164316, +
1.33e-65FFCP PHASE2:Mm9::chr11:29642912..29642916,-#_6245cee9d0dfc58d8460dcb56ac8e401p@chr11:29642912..29642916, -
1.33e-65FFCP PHASE1:Mm9::chr2:144564146..144564166,+#_6245cee9d0dfc58d8460dcb56ac8e401p3@Dtd1
1.33e-65FFCP PHASE2:Mm9::chr3:90392458..90392472,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr3:90392458..90392472, +
1.33e-65FFCP PHASE2:Mm9::chrX:20383628..20383635,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chrX:20383628..20383635, +
1.33e-65FFCP PHASE2:Mm9::chr19:47939269..47939279,-#_6245cee9d0dfc58d8460dcb56ac8e401-, p@chr19:47939269..47939279
1.33e-65FFCP PHASE2:Mm9::chr11:100002128..100002131,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr11:100002128..100002131, +
1.33e-65FFCP PHASE1:Mm9::chr19:47939269..47939279,-#_6245cee9d0dfc58d8460dcb56ac8e401p@chr19:47939269..47939279, -
1.33e-65FFCP PHASE1:Mm9::chr14:31386795..31386797,-#_6245cee9d0dfc58d8460dcb56ac8e401p@chr14:31386795..31386797, -
1.33e-65FFCP PHASE1:Mm9::chr11:100002128..100002131,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr11:100002128..100002131, +
1.33e-65FFCP PHASE2:Mm9::chr19:47932377..47932386,-#_6245cee9d0dfc58d8460dcb56ac8e401-, p@chr19:47932377..47932386
1.33e-65FFCP PHASE2:Mm9::chr3:121437538..121437546,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr3:121437538..121437546, +
1.33e-65FFCP PHASE2:Mm9::chr14:31386795..31386797,-#_6245cee9d0dfc58d8460dcb56ac8e401p@chr14:31386795..31386797, -
1.33e-65FFCP PHASE1:Mm9::chr3:121437538..121437546,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr3:121437538..121437546, +
1.33e-65FFCP PHASE1:Mm9::chr19:47932377..47932386,-#_6245cee9d0dfc58d8460dcb56ac8e401p@chr19:47932377..47932386, -
1.33e-65FFCP PHASE1:Mm9::chr14:34905716..34905718,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr14:34905716..34905718, +
1.33e-65FFCP PHASE2:Mm9::chr6:147212620..147212625,+#_6245cee9d0dfc58d8460dcb56ac8e401+, p@chr6:147212620..147212625
1.33e-65FFCP PHASE1:Mm9::chrX:20383628..20383635,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chrX:20383628..20383635, +
1.33e-65FFCP PHASE2:Mm9::chr3:121437587..121437593,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr3:121437587..121437593, +
1.33e-65FFCP PHASE1:Mm9::chr3:121437587..121437593,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr3:121437587..121437593, +
1.33e-65FFCP PHASE1:Mm9::chr3:90392458..90392472,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr3:90392458..90392472, +
1.33e-65FFCP PHASE1:Mm9::chr11:29642912..29642916,-#_6245cee9d0dfc58d8460dcb56ac8e401p@chr11:29642912..29642916, -
1.33e-65FFCP PHASE1:Mm9::chr6:147212620..147212625,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr6:147212620..147212625, +
1.33e-65FFCP PHASE2:Mm9::chr14:34905716..34905718,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr14:34905716..34905718, +
1.33e-65FFCP PHASE2:Mm9::chr2:144564146..144564166,+#_6245cee9d0dfc58d8460dcb56ac8e401p3@Dtd1
1.33e-65FFCP PHASE2:Mm9::chr11:4164303..4164316,+#_6245cee9d0dfc58d8460dcb56ac8e401p@chr11:4164303..4164316, +
6.04e-65FFCP PHASE1:Mm9::chr1:90456476..90456498,+#_4ba4a3a0fcbec2140672d91f7dc19d82p@chr1:90456476..90456498, +
6.04e-65FFCP PHASE2:Mm9::chr17:25888467..25888513,-#_4ba4a3a0fcbec2140672d91f7dc19d82p@chr17:25888467..25888513, -
6.04e-65FFCP PHASE2:Mm9::chr1:90456476..90456498,+#_4ba4a3a0fcbec2140672d91f7dc19d82p@chr1:90456476..90456498, +
6.04e-65FFCP PHASE2:Mm9::chr15:38385124..38385138,+#_4ba4a3a0fcbec2140672d91f7dc19d82p@chr15:38385124..38385138, +