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Revision as of 08:37, 15 June 2012

Name:mesenchyme condensation cell
Namespace:cell
Definition:"A mesenchymal cell in embryonic development found in a contracting mass and that gives rise to osteoprogenitors." [GOC:tfm, PMID:5025404]


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000134(mesenchymal cell)



Children


develops from:CL:0000375 (osteoprogenitor cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000335 (mesenchyme condensation cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
6.65e-72FFCP PHASE1:Hg19::chr12:53729525..53729541,-#_8909ac6472f83a1a063f0dc743b0c619p5@SP7
6.65e-72FFCP PHASE1:Hg19::chr8:38470503..38470508,+#_8909ac6472f83a1a063f0dc743b0c619+, p@chr8:38470503..38470508
6.65e-72FFCP PHASE2:Hg19::chr12:53729525..53729541,-#_8909ac6472f83a1a063f0dc743b0c619p5@SP7
6.65e-72FFCP PHASE2:Hg19::chr8:38470503..38470508,+#_8909ac6472f83a1a063f0dc743b0c619p@chr8:38470503..38470508, +
2.16e-54FFCP PHASE1:Hg19::chr6:45295874..45295877,+#_2a5e664793fabc5fc3f550274576e60ap47@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr1:199050926..199050944,-#_2a5e664793fabc5fc3f550274576e60ap@chr1:199050926..199050944, -
2.16e-54FFCP PHASE2:Hg19::chr12:53729546..53729565,-#_2a5e664793fabc5fc3f550274576e60ap4@SP7
2.16e-54FFCP PHASE2:Hg19::chr6:36733583..36733590,-#_2a5e664793fabc5fc3f550274576e60ap@chr6:36733583..36733590, -
2.16e-54FFCP PHASE1:Hg19::chr1:62392630..62392651,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:62392630..62392651, +
2.16e-54FFCP PHASE2:Hg19::chr9:116398779..116398800,+#_2a5e664793fabc5fc3f550274576e60ap@chr9:116398779..116398800, +
2.16e-54FFCP PHASE1:Hg19::chr11:124481316..124481334,+#_2a5e664793fabc5fc3f550274576e60ap1@PANX3
2.16e-54FFCP PHASE2:Hg19::chr6:45296391..45296400,+#_2a5e664793fabc5fc3f550274576e60ap52@RUNX2
2.16e-54FFCP PHASE1:Hg19::chr6:45296266..45296277,+#_2a5e664793fabc5fc3f550274576e60ap34@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr11:124481361..124481366,+#_2a5e664793fabc5fc3f550274576e60ap2@PANX3
2.16e-54FFCP PHASE1:Hg19::chr6:155427848..155427862,+#_2a5e664793fabc5fc3f550274576e60ap@chr6:155427848..155427862, +
2.16e-54FFCP PHASE2:Hg19::chr1:62392630..62392651,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:62392630..62392651, +
2.16e-54FFCP PHASE2:Hg19::chr11:124479851..124479862,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124479851..124479862, -
2.16e-54FFCP PHASE1:Hg19::chr6:36733583..36733590,-#_2a5e664793fabc5fc3f550274576e60ap@chr6:36733583..36733590, -
2.16e-54FFCP PHASE1:Hg19::chr12:53729546..53729565,-#_2a5e664793fabc5fc3f550274576e60ap4@SP7
2.16e-54FFCP PHASE1:Hg19::chr11:124481361..124481366,+#_2a5e664793fabc5fc3f550274576e60ap2@PANX3
2.16e-54FFCP PHASE1:Hg19::chr6:45296391..45296400,+#_2a5e664793fabc5fc3f550274576e60ap52@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr11:124482705..124482719,+#_2a5e664793fabc5fc3f550274576e60ap@chr11:124482705..124482719, +
2.16e-54FFCP PHASE2:Hg19::chr9:72436290..72436302,-#_2a5e664793fabc5fc3f550274576e60a-, p@chr9:72436290..72436302
2.16e-54FFCP PHASE2:Hg19::chr4:88731810..88731821,+#_2a5e664793fabc5fc3f550274576e60ap@chr4:88731810..88731821, +
2.16e-54FFCP PHASE1:Hg19::chr11:124479851..124479862,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124479851..124479862, -
2.16e-54FFCP PHASE2:Hg19::chr6:155427848..155427862,+#_2a5e664793fabc5fc3f550274576e60ap@chr6:155427848..155427862, +
2.16e-54FFCP PHASE1:Hg19::chr9:72436290..72436302,-#_2a5e664793fabc5fc3f550274576e60ap@chr9:72436290..72436302, -
2.16e-54FFCP PHASE2:Hg19::chr11:124480065..124480072,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124480065..124480072, -
2.16e-54FFCP PHASE1:Hg19::chr1:77864109..77864116,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:77864109..77864116, +
2.16e-54FFCP PHASE2:Hg19::chr1:77864109..77864116,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:77864109..77864116, +
2.16e-54FFCP PHASE1:Hg19::chr11:124482705..124482719,+#_2a5e664793fabc5fc3f550274576e60ap@chr11:124482705..124482719, +
2.16e-54FFCP PHASE2:Hg19::chr2:37593656..37593667,+#_2a5e664793fabc5fc3f550274576e60ap@chr2:37593656..37593667, +
2.16e-54FFCP PHASE2:Hg19::chr6:36733547..36733556,-#_2a5e664793fabc5fc3f550274576e60ap@chr6:36733547..36733556, -
2.16e-54FFCP PHASE1:Hg19::chr12:91395963..91395968,-#_2a5e664793fabc5fc3f550274576e60ap@chr12:91395963..91395968, -
2.16e-54FFCP PHASE1:Hg19::chr11:124480065..124480072,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124480065..124480072, -
2.16e-54FFCP PHASE2:Hg19::chr11:124480073..124480086,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124480073..124480086, -
2.16e-54FFCP PHASE2:Hg19::chr6:45295874..45295877,+#_2a5e664793fabc5fc3f550274576e60ap47@RUNX2
2.16e-54FFCP PHASE1:Hg19::chr6:36733547..36733556,-#_2a5e664793fabc5fc3f550274576e60a-, p@chr6:36733547..36733556
2.16e-54FFCP PHASE1:Hg19::chr1:62392583..62392613,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:62392583..62392613, +
2.16e-54FFCP PHASE2:Hg19::chr12:91395963..91395968,-#_2a5e664793fabc5fc3f550274576e60ap@chr12:91395963..91395968, -
2.16e-54FFCP PHASE1:Hg19::chr9:116398779..116398800,+#_2a5e664793fabc5fc3f550274576e60ap@chr9:116398779..116398800, +
2.16e-54FFCP PHASE1:Hg19::chr4:88731810..88731821,+#_2a5e664793fabc5fc3f550274576e60ap@chr4:88731810..88731821, +
2.16e-54FFCP PHASE1:Hg19::chr11:124480073..124480086,-#_2a5e664793fabc5fc3f550274576e60ap@chr11:124480073..124480086, -
2.16e-54FFCP PHASE2:Hg19::chr6:45296266..45296277,+#_2a5e664793fabc5fc3f550274576e60ap34@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr11:124481316..124481334,+#_2a5e664793fabc5fc3f550274576e60ap1@PANX3
2.16e-54FFCP PHASE1:Hg19::chr2:37593656..37593667,+#_2a5e664793fabc5fc3f550274576e60ap@chr2:37593656..37593667, +
2.16e-54FFCP PHASE2:Hg19::chr1:62392583..62392613,+#_2a5e664793fabc5fc3f550274576e60ap@chr1:62392583..62392613, +
2.16e-54FFCP PHASE1:Hg19::chr1:199050926..199050944,-#_2a5e664793fabc5fc3f550274576e60ap@chr1:199050926..199050944, -
1.03e-43FFCP PHASE1:Hg19::chr7:96654015..96654018,-#_b21e3e52d7b51dbc4cd27f0962bb3c23p3@DLX5
1.03e-43FFCP PHASE2:Hg19::chr7:96654015..96654018,-#_b21e3e52d7b51dbc4cd27f0962bb3c23p3@DLX5
4.07e-41FFCP PHASE1:Hg19::chr16:53707116..53707125,-#_42a8690b2aa5e91a5957c785b2f766adp@chr16:53707116..53707125, -
4.07e-41FFCP PHASE1:Hg19::chr6:143447228..143447237,+#_42a8690b2aa5e91a5957c785b2f766adp16@AIG1
4.07e-41FFCP PHASE2:Hg19::chr6:36733594..36733607,-#_42a8690b2aa5e91a5957c785b2f766adp@chr6:36733594..36733607, -
4.07e-41FFCP PHASE1:Hg19::chr6:36733594..36733607,-#_42a8690b2aa5e91a5957c785b2f766adp@chr6:36733594..36733607, -
4.07e-41FFCP PHASE2:Hg19::chr6:143447228..143447237,+#_42a8690b2aa5e91a5957c785b2f766adp16@AIG1
4.07e-41FFCP PHASE2:Hg19::chr16:53707116..53707125,-#_42a8690b2aa5e91a5957c785b2f766adp@chr16:53707116..53707125, -
4.07e-41FFCP PHASE2:Hg19::chr12:53721918..53721923,-#_42a8690b2aa5e91a5957c785b2f766adp@chr12:53721918..53721923, -
4.07e-41FFCP PHASE1:Hg19::chr12:53721918..53721923,-#_42a8690b2aa5e91a5957c785b2f766adp@chr12:53721918..53721923, -
4.67e-41FFCP PHASE1:Hg19::chr17:1932231..1932269,+#_8b166b914a231140259d0e5491475769p@chr17:1932231..1932269, +
4.67e-41FFCP PHASE1:Hg19::chr4:88732513..88732528,+#_8b166b914a231140259d0e5491475769p@chr4:88732513..88732528, +
4.67e-41FFCP PHASE2:Hg19::chr17:1932231..1932269,+#_8b166b914a231140259d0e5491475769p@chr17:1932231..1932269, +
4.67e-41FFCP PHASE2:Hg19::chr4:88732513..88732528,+#_8b166b914a231140259d0e5491475769p@chr4:88732513..88732528, +
5.35e-41FFCP PHASE2:Hg19::chr2:53859899..53859908,-#_c379e487e061c4470afa68051a333cb7p@chr2:53859899..53859908, -
5.35e-41FFCP PHASE1:Hg19::chr2:53859899..53859908,-#_c379e487e061c4470afa68051a333cb7p@chr2:53859899..53859908, -
6.8e-37FFCP PHASE1:Hg19::chr8:134020867..134020882,-#_4a330bbe883d851fed699fc1fd379898p@chr8:134020867..134020882, -
6.8e-37FFCP PHASE2:Hg19::chr4:88723803..88723839,+#_4a330bbe883d851fed699fc1fd379898p@chr4:88723803..88723839, +
6.8e-37FFCP PHASE1:Hg19::chr19:28248054..28248062,+#_4a330bbe883d851fed699fc1fd379898p@chr19:28248054..28248062, +
6.8e-37FFCP PHASE2:Hg19::chr3:55016721..55016732,-#_4a330bbe883d851fed699fc1fd379898p@chr3:55016721..55016732, -
6.8e-37FFCP PHASE2:Hg19::chr11:93129900..93129911,+#_4a330bbe883d851fed699fc1fd379898p@chr11:93129900..93129911, +
6.8e-37FFCP PHASE1:Hg19::chr17:79968630..79968635,+#_4a330bbe883d851fed699fc1fd379898p@chr17:79968630..79968635, +
6.8e-37FFCP PHASE2:Hg19::chr19:28236792..28236797,+#_4a330bbe883d851fed699fc1fd379898p@chr19:28236792..28236797, +
6.8e-37FFCP PHASE1:Hg19::chr19:28198009..28198037,-#_4a330bbe883d851fed699fc1fd379898p@chr19:28198009..28198037, -
6.8e-37FFCP PHASE1:Hg19::chrX:57930371..57930380,-#_4a330bbe883d851fed699fc1fd379898p@chrX:57930371..57930380, -
6.8e-37FFCP PHASE1:Hg19::chr17:79966585..79966594,+#_4a330bbe883d851fed699fc1fd379898+, p@chr17:79966585..79966594
6.8e-37FFCP PHASE1:Hg19::chr8:97570368..97570378,+#_4a330bbe883d851fed699fc1fd379898p@chr8:97570368..97570378, +
6.8e-37FFCP PHASE2:Hg19::chr19:28163893..28163904,+#_4a330bbe883d851fed699fc1fd379898p@chr19:28163893..28163904, +
6.8e-37FFCP PHASE2:Hg19::chr17:79965744..79965750,+#_4a330bbe883d851fed699fc1fd379898p11@ASPSCR1
6.8e-37FFCP PHASE2:Hg19::chr1:21894015..21894027,+#_4a330bbe883d851fed699fc1fd379898p@chr1:21894015..21894027, +
6.8e-37FFCP PHASE1:Hg19::chr4:88731854..88731869,+#_4a330bbe883d851fed699fc1fd379898p@chr4:88731854..88731869, +
6.8e-37FFCP PHASE2:Hg19::chr8:134021602..134021610,+#_4a330bbe883d851fed699fc1fd379898p@chr8:134021602..134021610, +
6.8e-37FFCP PHASE2:Hg19::chr17:79968522..79968530,+#_4a330bbe883d851fed699fc1fd379898p@chr17:79968522..79968530, +
6.8e-37FFCP PHASE1:Hg19::chr8:134029937..134029944,+#_4a330bbe883d851fed699fc1fd379898p22@TG
6.8e-37FFCP PHASE2:Hg19::chr1:52116793..52116805,+#_4a330bbe883d851fed699fc1fd379898p@chr1:52116793..52116805, +
6.8e-37FFCP PHASE2:Hg19::chr2:128896491..128896497,+#_4a330bbe883d851fed699fc1fd379898p@chr2:128896491..128896497, +
6.8e-37FFCP PHASE1:Hg19::chr20:17519297..17519304,-#_4a330bbe883d851fed699fc1fd379898p@chr20:17519297..17519304, -
6.8e-37FFCP PHASE1:Hg19::chr19:28202519..28202528,-#_4a330bbe883d851fed699fc1fd379898p@chr19:28202519..28202528, -
6.8e-37FFCP PHASE1:Hg19::chr15:30360803..30360815,-#_4a330bbe883d851fed699fc1fd379898p@chr15:30360803..30360815, -
6.8e-37FFCP PHASE1:Hg19::chrX:58168137..58168144,-#_4a330bbe883d851fed699fc1fd379898p@chrX:58168137..58168144, -
6.8e-37FFCP PHASE2:Hg19::chrX:58169111..58169120,-#_4a330bbe883d851fed699fc1fd379898p@chrX:58169111..58169120, -
6.8e-37FFCP PHASE1:Hg19::chr17:79968448..79968454,+#_4a330bbe883d851fed699fc1fd379898p@chr17:79968448..79968454, +
6.8e-37FFCP PHASE2:Hg19::chr19:28198179..28198195,+#_4a330bbe883d851fed699fc1fd379898p@chr19:28198179..28198195, +
6.8e-37FFCP PHASE2:Hg19::chr17:79966486..79966493,+#_4a330bbe883d851fed699fc1fd379898p@chr17:79966486..79966493, +
6.8e-37FFCP PHASE1:Hg19::chr19:28145289..28145296,-#_4a330bbe883d851fed699fc1fd379898p@chr19:28145289..28145296, -
6.8e-37FFCP PHASE1:Hg19::chr9:29940198..29940204,+#_4a330bbe883d851fed699fc1fd379898p@chr9:29940198..29940204, +
6.8e-37FFCP PHASE1:Hg19::chr1:105493789..105493826,-#_4a330bbe883d851fed699fc1fd379898p@chr1:105493789..105493826, -
6.8e-37FFCP PHASE1:Hg19::chr11:30911556..30911574,+#_4a330bbe883d851fed699fc1fd379898p@chr11:30911556..30911574, +
6.8e-37FFCP PHASE2:Hg19::chr6:81435467..81435479,+#_4a330bbe883d851fed699fc1fd379898p@chr6:81435467..81435479, +
6.8e-37FFCP PHASE1:Hg19::chr3:55016721..55016732,-#_4a330bbe883d851fed699fc1fd379898p@chr3:55016721..55016732, -
6.8e-37FFCP PHASE2:Hg19::chr6:160023967..160023971,+#_4a330bbe883d851fed699fc1fd379898p@chr6:160023967..160023971, +
6.8e-37FFCP PHASE2:Hg19::chr17:79967254..79967267,+#_4a330bbe883d851fed699fc1fd379898p@chr17:79967254..79967267, +