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Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant178
- db :HOCOMOCO
- Id :PAX8_f1
- name :
- score :0.14282671296680755
- External refs:
- EntrezGene:7849
UniProt:7849
- EntrezGene:7849
Motif matrix
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P0 | A | C | G | T | 1 | 4.2923940149626025 | 7.8273067331671 | 14.672693266832917 | 10.127805486284279 | 2 | 3.0299251870324215 | 8.24812967581048 | 3.534912718204489 | 22.107231920199496 | 3 | 9.089775561097277 | 14.0274314214464 | 11.783042394014977 | 2.0199501246882803 | 4 | 30.748129675810496 | 2.5810473815461337 | 2.0199501246882803 | 1.5710723192019957 | 5 | 5.049875311720709 | 16.608478802992508 | 0.0 | 15.261845386533679 | 6 | 2.524937655860351 | 5.89152119700747 | 1.5710723192019957 | 26.93266832917707 | 7 | 3.1421446384039915 | 16.15960099750623 | 16.608478802992508 | 1.009975062344142 | 8 | 17.169576059850375 | 2.1321695760598494 | 14.476309226932676 | 3.1421446384039915 | 9 | 15.822942643391507 | 12.119700748129667 | 4.937655860349122 | 4.039900249376568 | 10 | 1.009975062344142 | 8.304239401496273 | 25.081047381546163 | 2.524937655860351 | 11 | 5.274314214463847 | 19.526184538653382 | 0.0 | 12.119700748129667 | 12 | 14.364089775561087 | 4.039900249376568 | 18.516209476309246 | 0.0 | 13 | 0.0 | 3.591022443890276 | 16.832917705735646 | 16.49625935162096 | 14 | 12.708852867830426 | 2.0480049875311734 | 16.07543640897758 | 6.087905236907748 |
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Sub Motif Members